Ggra5304.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5304.t1
Unique NameGgra5304.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length119
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000082_piloncontigtig00000082_pilon:362982..363338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5304Ggra5304Gracilaria gracilis GNS1m malegenetig00000082_pilon 362982..363338 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5304.t1.start1Ggra5304.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000082_pilon 362982..362984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5304.t1.CDS1Ggra5304.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000082_pilon 362982..363338 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5304.t1.exon1Ggra5304.t1.exon1Gracilaria gracilis GNS1m maleexontig00000082_pilon 362982..363338 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5304.t1.stop1Ggra5304.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000082_pilon 363336..363338 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5304.t1Ggra5304.t1Gracilaria gracilis GNS1m malepolypeptidetig00000082_pilon 362982..363338 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5304.t1 ID=Ggra5304.t1|Name=Ggra5304.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=119bp
MIPPTASWSSLFGATLQFEKAEGKDFGGAEPRIFFDIFQYWLLLREATLS
SYGRIIDKECLEPTASAGREGPMMSTSFSLIEKEWKVVYHVLLVLETILG
DNMKTFDDVIALVILKKT*
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spliced messenger RNA

>Ggra5304.t1 ID=Ggra5304.t1|Name=Ggra5304.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=357bp|location=Sequence derived from alignment at tig00000082_pilon:362982..363338+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCCTCCTACCGCCTCATGGAGTAGTTTGTTTGGGGCAACGCTTCA
GTTTGAGAAAGCAGAAGGAAAAGATTTTGGAGGAGCGGAACCCAGAATCT
TTTTTGATATATTTCAATATTGGTTACTGCTACGGGAAGCAACATTGAGT
TCCTATGGTCGTATAATTGACAAGGAGTGTTTGGAGCCTACTGCCAGTGC
GGGTCGTGAGGGTCCAATGATGTCCACTTCATTCTCCTTGATTGAGAAAG
AGTGGAAAGTTGTATACCACGTTTTACTAGTTCTAGAAACTATACTAGGT
GACAATATGAAGACATTTGATGACGTGATAGCATTAGTCATTCTTAAGAA
AACGTAA
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protein sequence of Ggra5304.t1

>Ggra5304.t1 ID=Ggra5304.t1|Name=Ggra5304.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=119bp
MIPPTASWSSLFGATLQFEKAEGKDFGGAEPRIFFDIFQYWLLLREATLS
SYGRIIDKECLEPTASAGREGPMMSTSFSLIEKEWKVVYHVLLVLETILG
DNMKTFDDVIALVILKKT*
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mRNA from alignment at tig00000082_pilon:362982..363338+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5304.t1 ID=Ggra5304.t1|Name=Ggra5304.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=357bp|location=Sequence derived from alignment at tig00000082_pilon:362982..363338+ (Gracilaria gracilis GNS1m male)
ATGATTCCTCCTACCGCCTCATGGAGTAGTTTGTTTGGGGCAACGCTTCA
GTTTGAGAAAGCAGAAGGAAAAGATTTTGGAGGAGCGGAACCCAGAATCT
TTTTTGATATATTTCAATATTGGTTACTGCTACGGGAAGCAACATTGAGT
TCCTATGGTCGTATAATTGACAAGGAGTGTTTGGAGCCTACTGCCAGTGC
GGGTCGTGAGGGTCCAATGATGTCCACTTCATTCTCCTTGATTGAGAAAG
AGTGGAAAGTTGTATACCACGTTTTACTAGTTCTAGAAACTATACTAGGT
GACAATATGAAGACATTTGATGACGTGATAGCATTAGTCATTCTTAAGAA
AACGTAA
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Coding sequence (CDS) from alignment at tig00000082_pilon:362982..363338+

>Ggra5304.t1 ID=Ggra5304.t1|Name=Ggra5304.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=357bp|location=Sequence derived from alignment at tig00000082_pilon:362982..363338+ (Gracilaria gracilis GNS1m male)
ATGATTCCTCCTACCGCCTCATGGAGTAGTTTGTTTGGGGCAACGCTTCA
GTTTGAGAAAGCAGAAGGAAAAGATTTTGGAGGAGCGGAACCCAGAATCT
TTTTTGATATATTTCAATATTGGTTACTGCTACGGGAAGCAACATTGAGT
TCCTATGGTCGTATAATTGACAAGGAGTGTTTGGAGCCTACTGCCAGTGC
GGGTCGTGAGGGTCCAATGATGTCCACTTCATTCTCCTTGATTGAGAAAG
AGTGGAAAGTTGTATACCACGTTTTACTAGTTCTAGAAACTATACTAGGT
GACAATATGAAGACATTTGATGACGTGATAGCATTAGTCATTCTTAAGAA
AACGTAA
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