Ggra5287.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5287.t1
Unique NameGgra5287.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length792
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000082_piloncontigtig00000082_pilon:149649..152244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5287Ggra5287Gracilaria gracilis GNS1m malegenetig00000082_pilon 149649..152244 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5287.t1Ggra5287.t1Gracilaria gracilis GNS1m malepolypeptidetig00000082_pilon 149649..152244 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5287.t1.start1Ggra5287.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000082_pilon 149649..149651 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5287.t1.CDS1Ggra5287.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000082_pilon 149649..150820 +
Ggra5287.t1.CDS2Ggra5287.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000082_pilon 150902..151803 +
Ggra5287.t1.CDS3Ggra5287.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000082_pilon 151943..152244 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5287.t1.exon1Ggra5287.t1.exon1Gracilaria gracilis GNS1m maleexontig00000082_pilon 149649..150820 +
Ggra5287.t1.exon2Ggra5287.t1.exon2Gracilaria gracilis GNS1m maleexontig00000082_pilon 150902..151803 +
Ggra5287.t1.exon3Ggra5287.t1.exon3Gracilaria gracilis GNS1m maleexontig00000082_pilon 151943..152244 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5287.t1.intron1Ggra5287.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000082_pilon 150821..150901 +
Ggra5287.t1.intron2Ggra5287.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000082_pilon 151804..151942 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5287.t1.stop1Ggra5287.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000082_pilon 152242..152244 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5287.t1 ID=Ggra5287.t1|Name=Ggra5287.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=792bp
MVDLIDGVDLDYLSQLSAAVYDRILKARASPIRLASADIFIGPVVGREYS
KVILNSVELEIGCPANFQVSQPLLVLVAPDGNLAHKLLVLGGGHRLLISS
RILHLLAIPYQVVDFSNILGIKVLDVQQYEALVTHHIEASEPRPREYGIM
QQVALYARLKVWWTQLEAKRVHWSVRKTRPKAMTKAKLIALYNTLRAISG
IRSRYAIGFLEVSVRKTTRKDYICGADRLLQSGVVEDLCFLESQGRTRFS
ISTLNVVRSLSVSRIRSTVKDWVRKRKKGDYSILRFEHTKKRISTKNAEQ
PGPEIDKGEVRSALLNTGVEKRATSTTATTSLQTVRSPRPLLSVSKALSL
DHSTTPAEQASTEQALLRPEPSPSVSPPAHAEKGDGDPRPTPCFETFDKV
EKLLEKEESKSAKAKGAVLADVVSSRWEVVRRVKEELFHSTNPTAIDTIK
LLSQKTEEVRNRGTNETLVEAEGGFLQSKLVLDNKDVRAIFKESMATDQA
LVFTLSFLNNWTPDATSGIHVADPMHTAGWWEKRLTSKCEELKKLRRQVT
RSTGYQRTCHEMMWSSGISLLFLAGSNHLSLAVVYNLFSLLNYFKSYGWR
LKPGTVKKKVKASIIYLDSLGLDSPPIDLYDNMLFYLTACLPNVNINTDY
IRSVLIRKYCGVHVQRDLECGFYASLNASFVSKDLALFRNGANVEDVDDT
PGQRQAENQKDCNAETASNGENASSSGVTDDQTRTDFLRIAQEGERLVGD
VSDQHLIRQWEECVSKAAALVKEMKGRSPPQRAPSENVQHK*
back to top

spliced messenger RNA

>Ggra5287.t1 ID=Ggra5287.t1|Name=Ggra5287.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2376bp|location=Sequence derived from alignment at tig00000082_pilon:149649..152244+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGACCTCATAGACGGAGTAGACCTCGACTACCTCAGTCAGCTATC
TGCGGCTGTGTACGATCGTATTCTCAAAGCACGAGCTTCTCCCATTCGCC
TTGCCAGCGCCGATATTTTTATAGGCCCTGTCGTTGGCAGAGAGTACTCG
AAAGTCATTCTGAACAGTGTGGAATTGGAAATAGGATGTCCAGCGAACTT
TCAGGTATCGCAACCTCTTCTTGTTCTGGTAGCACCTGATGGAAACCTCG
CACACAAGCTTCTAGTTCTGGGAGGGGGCCACCGACTACTAATCAGTTCG
CGAATTCTGCACCTTTTGGCAATTCCATATCAAGTTGTGGACTTCTCAAA
TATATTAGGCATAAAAGTGCTCGACGTGCAGCAATATGAAGCTCTGGTTA
CGCACCATATCGAAGCATCGGAGCCTCGTCCAAGGGAGTATGGAATTATG
CAGCAGGTAGCTCTTTACGCAAGGCTTAAAGTGTGGTGGACCCAACTAGA
GGCAAAACGTGTGCATTGGAGCGTTCGTAAGACTAGGCCGAAGGCGATGA
CAAAAGCAAAGCTGATCGCTCTCTATAACACTTTGAGAGCAATCTCAGGG
ATTCGAAGTCGTTATGCTATTGGGTTTCTAGAAGTATCTGTGCGTAAGAC
CACACGAAAGGATTACATTTGTGGAGCCGATCGCCTCCTTCAATCGGGTG
TTGTGGAAGATCTTTGTTTCTTAGAGTCACAAGGTCGTACTCGATTTTCT
ATCTCTACTCTCAATGTAGTTCGTTCATTGTCAGTTTCAAGAATTAGAAG
TACTGTAAAGGACTGGGTGCGGAAGAGGAAGAAGGGAGATTACTCCATAC
TACGCTTCGAGCATACAAAGAAAAGGATATCAACAAAGAATGCAGAGCAA
CCAGGCCCAGAGATTGACAAGGGCGAAGTAAGGAGTGCATTGCTTAACAC
AGGAGTTGAAAAACGAGCCACGTCTACTACGGCCACAACCTCCCTCCAGA
CTGTGAGGTCACCAAGGCCTTTACTATCTGTAAGCAAAGCCTTATCATTA
GATCACTCAACTACGCCTGCAGAGCAGGCATCTACGGAACAGGCCTTACT
TCGACCAGAGCCATCACCGTCCGTCTCCCCCCCAGCTCACGCAGAGAAAG
GCGATGGGGATCCACGCCCAACACCTTGTTTCGAAACTTTTGATAAAGTG
GAAAAACTATTGGAAAAGGAAGAAAGCAAAAGCGCGAAAGCAAAGGGTGC
CGTTCTGGCGGATGTTGTATCATCGCGTTGGGAAGTTGTGCGTCGCGTAA
AGGAAGAACTTTTCCACAGCACCAATCCCACTGCGATAGACACCATAAAA
CTATTGTCTCAAAAGACGGAGGAGGTCAGAAACCGAGGTACGAACGAGAC
ATTGGTAGAGGCCGAAGGTGGATTCCTGCAGAGCAAATTGGTGCTGGACA
ATAAGGACGTTAGAGCAATTTTCAAGGAGAGCATGGCCACAGATCAAGCG
TTGGTGTTCACACTCTCATTTCTGAATAACTGGACTCCAGATGCAACCAG
TGGCATACATGTAGCCGACCCAATGCACACTGCGGGCTGGTGGGAGAAGC
GTCTTACCTCGAAGTGTGAGGAGCTGAAAAAGCTTCGTCGTCAGGTTACG
AGGTCAACTGGTTATCAGAGGACATGCCATGAAATGATGTGGAGCTCTGG
GATCTCGCTACTCTTCCTAGCAGGTAGTAATCATTTGAGTCTTGCAGTAG
TCTACAATCTATTTTCACTGCTGAACTACTTCAAAAGTTATGGATGGCGA
TTGAAGCCTGGAACAGTGAAGAAGAAGGTTAAAGCATCAATTATATATCT
TGACAGCCTCGGTCTGGACAGCCCGCCCATTGACTTGTACGACAACATGC
TCTTTTACCTTACCGCCTGCTTGCCAAATGTGAACATCAATACGGACTAC
ATTAGATCCGTTCTAATCCGAAAGTATTGCGGTGTTCATGTCCAGAGAGA
CCTCGAGTGTGGCTTTTACGCTAGCTTAAACGCATCATTTGTCTCGAAGG
ACCTCGCACTATTTCGCAACGGTGCGAACGTTGAAGATGTCGACGACACA
CCCGGACAACGACAGGCAGAGAATCAGAAGGACTGTAACGCCGAAACCGC
ATCAAACGGAGAGAACGCGTCTAGCTCTGGAGTTACTGACGACCAGACCC
GCACGGACTTTCTACGCATCGCTCAAGAAGGAGAAAGACTGGTCGGAGAC
GTCTCGGACCAACACTTGATAAGGCAGTGGGAAGAGTGTGTATCAAAGGC
AGCGGCTTTGGTGAAGGAAATGAAAGGACGTTCTCCGCCACAACGAGCCC
CAAGTGAAAATGTGCAACACAAATGA
back to top

protein sequence of Ggra5287.t1

>Ggra5287.t1 ID=Ggra5287.t1|Name=Ggra5287.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=792bp
MVDLIDGVDLDYLSQLSAAVYDRILKARASPIRLASADIFIGPVVGREYS
KVILNSVELEIGCPANFQVSQPLLVLVAPDGNLAHKLLVLGGGHRLLISS
RILHLLAIPYQVVDFSNILGIKVLDVQQYEALVTHHIEASEPRPREYGIM
QQVALYARLKVWWTQLEAKRVHWSVRKTRPKAMTKAKLIALYNTLRAISG
IRSRYAIGFLEVSVRKTTRKDYICGADRLLQSGVVEDLCFLESQGRTRFS
ISTLNVVRSLSVSRIRSTVKDWVRKRKKGDYSILRFEHTKKRISTKNAEQ
PGPEIDKGEVRSALLNTGVEKRATSTTATTSLQTVRSPRPLLSVSKALSL
DHSTTPAEQASTEQALLRPEPSPSVSPPAHAEKGDGDPRPTPCFETFDKV
EKLLEKEESKSAKAKGAVLADVVSSRWEVVRRVKEELFHSTNPTAIDTIK
LLSQKTEEVRNRGTNETLVEAEGGFLQSKLVLDNKDVRAIFKESMATDQA
LVFTLSFLNNWTPDATSGIHVADPMHTAGWWEKRLTSKCEELKKLRRQVT
RSTGYQRTCHEMMWSSGISLLFLAGSNHLSLAVVYNLFSLLNYFKSYGWR
LKPGTVKKKVKASIIYLDSLGLDSPPIDLYDNMLFYLTACLPNVNINTDY
IRSVLIRKYCGVHVQRDLECGFYASLNASFVSKDLALFRNGANVEDVDDT
PGQRQAENQKDCNAETASNGENASSSGVTDDQTRTDFLRIAQEGERLVGD
VSDQHLIRQWEECVSKAAALVKEMKGRSPPQRAPSENVQHK*
back to top

mRNA from alignment at tig00000082_pilon:149649..152244+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5287.t1 ID=Ggra5287.t1|Name=Ggra5287.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2596bp|location=Sequence derived from alignment at tig00000082_pilon:149649..152244+ (Gracilaria gracilis GNS1m male)
ATGGTGGACCTCATAGACGGAGTAGACCTCGACTACCTCAGTCAGCTATC TGCGGCTGTGTACGATCGTATTCTCAAAGCACGAGCTTCTCCCATTCGCC TTGCCAGCGCCGATATTTTTATAGGCCCTGTCGTTGGCAGAGAGTACTCG AAAGTCATTCTGAACAGTGTGGAATTGGAAATAGGATGTCCAGCGAACTT TCAGGTATCGCAACCTCTTCTTGTTCTGGTAGCACCTGATGGAAACCTCG CACACAAGCTTCTAGTTCTGGGAGGGGGCCACCGACTACTAATCAGTTCG CGAATTCTGCACCTTTTGGCAATTCCATATCAAGTTGTGGACTTCTCAAA TATATTAGGCATAAAAGTGCTCGACGTGCAGCAATATGAAGCTCTGGTTA CGCACCATATCGAAGCATCGGAGCCTCGTCCAAGGGAGTATGGAATTATG CAGCAGGTAGCTCTTTACGCAAGGCTTAAAGTGTGGTGGACCCAACTAGA GGCAAAACGTGTGCATTGGAGCGTTCGTAAGACTAGGCCGAAGGCGATGA CAAAAGCAAAGCTGATCGCTCTCTATAACACTTTGAGAGCAATCTCAGGG ATTCGAAGTCGTTATGCTATTGGGTTTCTAGAAGTATCTGTGCGTAAGAC CACACGAAAGGATTACATTTGTGGAGCCGATCGCCTCCTTCAATCGGGTG TTGTGGAAGATCTTTGTTTCTTAGAGTCACAAGGTCGTACTCGATTTTCT ATCTCTACTCTCAATGTAGTTCGTTCATTGTCAGTTTCAAGAATTAGAAG TACTGTAAAGGACTGGGTGCGGAAGAGGAAGAAGGGAGATTACTCCATAC TACGCTTCGAGCATACAAAGAAAAGGATATCAACAAAGAATGCAGAGCAA CCAGGCCCAGAGATTGACAAGGGCGAAGTAAGGAGTGCATTGCTTAACAC AGGAGTTGAAAAACGAGCCACGTCTACTACGGCCACAACCTCCCTCCAGA CTGTGAGGTCACCAAGGCCTTTACTATCTGTAAGCAAAGCCTTATCATTA GATCACTCAACTACGCCTGCAGAGCAGGCATCTACGGAACAGGCCTTACT TCGACCAGAGCCATCACCGTCCGTCTCCCCCCCAGCTCACGCAGAGAAAG GCGATGGGGATCCACGCCCAACGTTAGACGGGAAGGAACCACAGTTTAAG CGTCAACGTCGAATTCCCCCAGAATGAAAAATGTACTTCCCTGGAAACTG CAGACCTTGTTTCGAAACTTTTGATAAAGTGGAAAAACTATTGGAAAAGG AAGAAAGCAAAAGCGCGAAAGCAAAGGGTGCCGTTCTGGCGGATGTTGTA TCATCGCGTTGGGAAGTTGTGCGTCGCGTAAAGGAAGAACTTTTCCACAG CACCAATCCCACTGCGATAGACACCATAAAACTATTGTCTCAAAAGACGG AGGAGGTCAGAAACCGAGGTACGAACGAGACATTGGTAGAGGCCGAAGGT GGATTCCTGCAGAGCAAATTGGTGCTGGACAATAAGGACGTTAGAGCAAT TTTCAAGGAGAGCATGGCCACAGATCAAGCGTTGGTGTTCACACTCTCAT TTCTGAATAACTGGACTCCAGATGCAACCAGTGGCATACATGTAGCCGAC CCAATGCACACTGCGGGCTGGTGGGAGAAGCGTCTTACCTCGAAGTGTGA GGAGCTGAAAAAGCTTCGTCGTCAGGTTACGAGGTCAACTGGTTATCAGA GGACATGCCATGAAATGATGTGGAGCTCTGGGATCTCGCTACTCTTCCTA GCAGGTAGTAATCATTTGAGTCTTGCAGTAGTCTACAATCTATTTTCACT GCTGAACTACTTCAAAAGTTATGGATGGCGATTGAAGCCTGGAACAGTGA AGAAGAAGGTTAAAGCATCAATTATATATCTTGACAGCCTCGGTCTGGAC AGCCCGCCCATTGACTTGTACGACAACATGCTCTTTTACCTTACCGCCTG CTTGCCAAATGTGAACATCAATACGGACTACATTAGATCCGTTCTAATCC GAAAGTATTGCGGTGTTCATGTCCAGAGAGACCTCGAGTGTGGCTTTTAC GCTAGCTTAAACGCATCATTTGTCTCGAAGGACCTCGCACTATTTCGCAA CGGTGGTACAAAACAAATCATCCGTGATCTTAAGACATTCTACGCAACCT ATCCATTTTTCGAGTATCATCTGCTCCTGCAAAATCGTTTACGTGCACTA ACCGCAGCATATACTCGTGATCTCAAAGGTCATTCGATGTTCAGCGAACG TTGAAGATGTCGACGACACACCCGGACAACGACAGGCAGAGAATCAGAAG GACTGTAACGCCGAAACCGCATCAAACGGAGAGAACGCGTCTAGCTCTGG AGTTACTGACGACCAGACCCGCACGGACTTTCTACGCATCGCTCAAGAAG GAGAAAGACTGGTCGGAGACGTCTCGGACCAACACTTGATAAGGCAGTGG GAAGAGTGTGTATCAAAGGCAGCGGCTTTGGTGAAGGAAATGAAAGGACG TTCTCCGCCACAACGAGCCCCAAGTGAAAATGTGCAACACAAATGA
back to top

Coding sequence (CDS) from alignment at tig00000082_pilon:149649..152244+

>Ggra5287.t1 ID=Ggra5287.t1|Name=Ggra5287.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2376bp|location=Sequence derived from alignment at tig00000082_pilon:149649..152244+ (Gracilaria gracilis GNS1m male)
ATGGTGGACCTCATAGACGGAGTAGACCTCGACTACCTCAGTCAGCTATC
TGCGGCTGTGTACGATCGTATTCTCAAAGCACGAGCTTCTCCCATTCGCC
TTGCCAGCGCCGATATTTTTATAGGCCCTGTCGTTGGCAGAGAGTACTCG
AAAGTCATTCTGAACAGTGTGGAATTGGAAATAGGATGTCCAGCGAACTT
TCAGGTATCGCAACCTCTTCTTGTTCTGGTAGCACCTGATGGAAACCTCG
CACACAAGCTTCTAGTTCTGGGAGGGGGCCACCGACTACTAATCAGTTCG
CGAATTCTGCACCTTTTGGCAATTCCATATCAAGTTGTGGACTTCTCAAA
TATATTAGGCATAAAAGTGCTCGACGTGCAGCAATATGAAGCTCTGGTTA
CGCACCATATCGAAGCATCGGAGCCTCGTCCAAGGGAGTATGGAATTATG
CAGCAGGTAGCTCTTTACGCAAGGCTTAAAGTGTGGTGGACCCAACTAGA
GGCAAAACGTGTGCATTGGAGCGTTCGTAAGACTAGGCCGAAGGCGATGA
CAAAAGCAAAGCTGATCGCTCTCTATAACACTTTGAGAGCAATCTCAGGG
ATTCGAAGTCGTTATGCTATTGGGTTTCTAGAAGTATCTGTGCGTAAGAC
CACACGAAAGGATTACATTTGTGGAGCCGATCGCCTCCTTCAATCGGGTG
TTGTGGAAGATCTTTGTTTCTTAGAGTCACAAGGTCGTACTCGATTTTCT
ATCTCTACTCTCAATGTAGTTCGTTCATTGTCAGTTTCAAGAATTAGAAG
TACTGTAAAGGACTGGGTGCGGAAGAGGAAGAAGGGAGATTACTCCATAC
TACGCTTCGAGCATACAAAGAAAAGGATATCAACAAAGAATGCAGAGCAA
CCAGGCCCAGAGATTGACAAGGGCGAAGTAAGGAGTGCATTGCTTAACAC
AGGAGTTGAAAAACGAGCCACGTCTACTACGGCCACAACCTCCCTCCAGA
CTGTGAGGTCACCAAGGCCTTTACTATCTGTAAGCAAAGCCTTATCATTA
GATCACTCAACTACGCCTGCAGAGCAGGCATCTACGGAACAGGCCTTACT
TCGACCAGAGCCATCACCGTCCGTCTCCCCCCCAGCTCACGCAGAGAAAG
GCGATGGGGATCCACGCCCAACACCTTGTTTCGAAACTTTTGATAAAGTG
GAAAAACTATTGGAAAAGGAAGAAAGCAAAAGCGCGAAAGCAAAGGGTGC
CGTTCTGGCGGATGTTGTATCATCGCGTTGGGAAGTTGTGCGTCGCGTAA
AGGAAGAACTTTTCCACAGCACCAATCCCACTGCGATAGACACCATAAAA
CTATTGTCTCAAAAGACGGAGGAGGTCAGAAACCGAGGTACGAACGAGAC
ATTGGTAGAGGCCGAAGGTGGATTCCTGCAGAGCAAATTGGTGCTGGACA
ATAAGGACGTTAGAGCAATTTTCAAGGAGAGCATGGCCACAGATCAAGCG
TTGGTGTTCACACTCTCATTTCTGAATAACTGGACTCCAGATGCAACCAG
TGGCATACATGTAGCCGACCCAATGCACACTGCGGGCTGGTGGGAGAAGC
GTCTTACCTCGAAGTGTGAGGAGCTGAAAAAGCTTCGTCGTCAGGTTACG
AGGTCAACTGGTTATCAGAGGACATGCCATGAAATGATGTGGAGCTCTGG
GATCTCGCTACTCTTCCTAGCAGGTAGTAATCATTTGAGTCTTGCAGTAG
TCTACAATCTATTTTCACTGCTGAACTACTTCAAAAGTTATGGATGGCGA
TTGAAGCCTGGAACAGTGAAGAAGAAGGTTAAAGCATCAATTATATATCT
TGACAGCCTCGGTCTGGACAGCCCGCCCATTGACTTGTACGACAACATGC
TCTTTTACCTTACCGCCTGCTTGCCAAATGTGAACATCAATACGGACTAC
ATTAGATCCGTTCTAATCCGAAAGTATTGCGGTGTTCATGTCCAGAGAGA
CCTCGAGTGTGGCTTTTACGCTAGCTTAAACGCATCATTTGTCTCGAAGG
ACCTCGCACTATTTCGCAACGGTGCGAACGTTGAAGATGTCGACGACACA
CCCGGACAACGACAGGCAGAGAATCAGAAGGACTGTAACGCCGAAACCGC
ATCAAACGGAGAGAACGCGTCTAGCTCTGGAGTTACTGACGACCAGACCC
GCACGGACTTTCTACGCATCGCTCAAGAAGGAGAAAGACTGGTCGGAGAC
GTCTCGGACCAACACTTGATAAGGCAGTGGGAAGAGTGTGTATCAAAGGC
AGCGGCTTTGGTGAAGGAAATGAAAGGACGTTCTCCGCCACAACGAGCCC
CAAGTGAAAATGTGCAACACAAATGA
back to top