Ggra5303.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5303.t1
Unique NameGgra5303.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length139
Homology
BLAST of Ggra5303.t1 vs. uniprot
Match: A0A2V3IDE9 (Ribosomal_L28e domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDE9_9FLOR)

HSP 1 Score: 218 bits (556), Expect = 3.600e-71
Identity = 108/138 (78.26%), Postives = 121/138 (87.68%), Query Frame = 0
Query:    1 MSEALLWQIIRKNNSKTVTTPTPRTVRVYEKGSLRSLYTRRDSGFCNIAAVDVSTNEDGIPVLSLKNRKADARRNPDKMWRSITLTGGVRKALSRTDKLLTGYAPSKKMAALRKVSATYKALARKNNGVDHTKFIATE 138
            MSEALLWQ+IRKNNS+T+ +  PRT R YEKGSLR+L ++ DSGFCNI  V+VS NEDG+PVLSLKNRK +ARRNPDKMWR+ITL+GGVRKAL+RTDKLLT YAPSKK  ALRKVSA YKA ARKN GVDHTKFIATE
Sbjct:    1 MSEALLWQLIRKNNSRTLCSRNPRTARTYEKGSLRNLISKTDSGFCNITVVNVSANEDGLPVLSLKNRKPEARRNPDKMWRTITLSGGVRKALARTDKLLTSYAPSKKKDALRKVSAIYKAYARKNKGVDHTKFIATE 138          
BLAST of Ggra5303.t1 vs. uniprot
Match: R7QP82 (Ribosomal_L28e domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QP82_CHOCR)

HSP 1 Score: 137 bits (346), Expect = 2.730e-39
Identity = 73/129 (56.59%), Postives = 89/129 (68.99%), Query Frame = 0
Query:    1 MSEALLWQIIRKNNSKTVTTPTPRTVRVYEKGSLRSLYTRRDSGFCNIAAVDVSTNEDGIPVLSLKNRKADARRNPDKMWRSITLTGGVRKALSRTDKLLTGYAPSKKMAALRKVSATYKALARKNNGV 129
            MSEAL+W++++  +SK +    P  V   EKGSL    T RDSG   I AVDVS N+DGIPVL++KN   +  R PDKMWR +TL+GGVRKALS TD LL+ Y P+ K  A+RKVSA Y ALARKN  V
Sbjct:    1 MSEALIWEVMKSYSSKGMRRTHPVGVFTREKGSLCHKRTLRDSGLARIRAVDVSINDDGIPVLAIKNANPEESRLPDKMWREVTLSGGVRKALSTTDSLLSDYKPALKKPAMRKVSAAYMALARKNKAV 129          
BLAST of Ggra5303.t1 vs. uniprot
Match: A0A5J4YMI0 (60S ribosomal protein L28 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YMI0_PORPP)

HSP 1 Score: 64.3 bits (155), Expect = 1.570e-10
Identity = 43/133 (32.33%), Postives = 67/133 (50.38%), Query Frame = 0
Query:    1 MSEALLWQIIRKNNSKTVTTPTPRTVRVYEKGSLRSLYTRRDSGFCNIAAVDVSTNEDGIPVLSLKNRKADARRNPDKMWRSITLTGGVRKALSRTDKLLTGYAPSKKMAALRKVSATYKALARKNNGVDHTK 133
            MS+AL+WQ++RKNN         +     E+ +    +T + SG  N  AV V  + +   V+ +K++K    R P  M+ +I +  G R A++  DK L  Y P  K A L ++SA Y+    KN  V  +K
Sbjct:    1 MSDALVWQLVRKNNC--FMKKRGKFTFSAERANAAKQHTFQASGLANQKAVGVELDANKNVVMIVKSKKESNARKPKSMFMTIGMKKGSRSAIATADKYLGKYRPDLKPAVLSRISAFYRG---KNKAVKSSK 128          
The following BLAST results are available for this feature:
BLAST of Ggra5303.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IDE93.600e-7178.26Ribosomal_L28e domain-containing protein n=1 Tax=G... [more]
R7QP822.730e-3956.59Ribosomal_L28e domain-containing protein n=1 Tax=C... [more]
A0A5J4YMI01.570e-1032.3360S ribosomal protein L28 n=1 Tax=Porphyridium pur... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.390.110coord: 2..125
e-value: 6.4E-18
score: 67.4
IPR029004Ribosomal L28e/Mak16PFAMPF01778Ribosomal_L28ecoord: 5..120
e-value: 3.1E-16
score: 60.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000082_piloncontigtig00000082_pilon:277738..278154 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5303.t1Ggra5303.t1Gracilaria gracilis GNS1m malemRNAtig00000082_pilon 277738..278154 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5303.t1 ID=Ggra5303.t1|Name=Ggra5303.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=139bp
MSEALLWQIIRKNNSKTVTTPTPRTVRVYEKGSLRSLYTRRDSGFCNIAA
VDVSTNEDGIPVLSLKNRKADARRNPDKMWRSITLTGGVRKALSRTDKLL
TGYAPSKKMAALRKVSATYKALARKNNGVDHTKFIATE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029004L28e/Mak16