Ggra5295.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5295.t1
Unique NameGgra5295.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length510
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000082_piloncontigtig00000082_pilon:255680..257316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX50556
Preferred nameGSTCD
PFAMsMethyltransf_31,Methyltransf_32
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013
Evalue5.81e-25
EggNOG OGsCOG0500@1|root,2QUFE@2759|Eukaryota
DescriptionMethyltransferase domain
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5295Ggra5295Gracilaria gracilis GNS1m malegenetig00000082_pilon 255680..257316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5295.t1Ggra5295.t1Gracilaria gracilis GNS1m malepolypeptidetig00000082_pilon 255680..257316 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5295.t1.start1Ggra5295.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000082_pilon 255680..255682 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5295.t1.CDS1Ggra5295.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000082_pilon 255680..255840 +
Ggra5295.t1.CDS2Ggra5295.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000082_pilon 255948..257316 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5295.t1.exon1Ggra5295.t1.exon1Gracilaria gracilis GNS1m maleexontig00000082_pilon 255680..255840 +
Ggra5295.t1.exon2Ggra5295.t1.exon2Gracilaria gracilis GNS1m maleexontig00000082_pilon 255948..257316 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5295.t1.intron1Ggra5295.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000082_pilon 255841..255947 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5295.t1.stop1Ggra5295.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000082_pilon 257314..257316 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5295.t1 ID=Ggra5295.t1|Name=Ggra5295.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=510bp
MDLIICRPQWILLLKGMQTDQPPNMEFHQPVPTRSVHRYDTSSLSFLLWS
TPILTALSIAAERARRAQLNNVQTHHVSVQKLSLSFDIALALHACGGASD
AVISAAVRSKAALLVVPCCVGAVVSSRSKTTGAFSSIDPVQNSCGSSEIN
WHVSRSAVFRGLLKGSEYGCLVKAADFGEHGIDDWRKLSKALVEWDRLQW
LRAEHYQTRLTKMRPLSCSPKNDVLIAWPEKGGLEFHGHWPPDELANGFV
RDVVDGSVLNGLGVTEVREVERSLRALVCDENSSGIYRSAIGAGKRRRKV
IHAVAESMGLWHRSDGRGAQRTVVVSRTPYWPFFFDNYVGLGGPLVESIC
AGFISKVPQRLLERRVLVRGRPHHITIVPPTEFNLLDSRLRDDRDSCLEF
VSRRLFGTSLQVLGLGRVQCSSVANGLIAWDGSDVETAMKPDVKFSQQEA
YYVVVQWPEAQRLRDEMGLPRKDLHITLGFTDKDIHNSRKDVKTLVYRNE
REHVLHALS*
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spliced messenger RNA

>Ggra5295.t1 ID=Ggra5295.t1|Name=Ggra5295.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000082_pilon:255680..257316+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTTGATAATATGCCGCCCGCAGTGGATCCTGCTTCTAAAGGGCAT
GCAAACGGACCAGCCCCCAAATATGGAGTTCCACCAGCCCGTGCCGACAA
GAAGCGTGCACAGATACGATACCTCGTCTCTGTCCTTTCTGTTATGGTCG
ACGCCCATCCTAACAGCTCTTTCTATTGCCGCAGAGCGCGCCAGAAGAGC
GCAACTCAATAATGTTCAGACGCATCATGTCTCTGTACAGAAACTATCTC
TTTCTTTTGACATTGCTCTAGCCTTGCATGCCTGCGGTGGTGCGTCTGAT
GCCGTTATATCGGCTGCCGTCCGTTCCAAAGCTGCGCTTCTGGTTGTTCC
ATGTTGTGTTGGTGCTGTAGTCTCATCGCGTTCGAAGACAACCGGAGCGT
TCTCTAGCATAGATCCAGTGCAGAATTCCTGTGGTAGTTCCGAGATAAAC
TGGCATGTCTCGCGGAGTGCTGTGTTCAGAGGTTTGCTCAAAGGGAGTGA
GTACGGCTGTCTCGTGAAAGCTGCAGATTTCGGTGAACATGGTATCGATG
ATTGGCGGAAACTATCGAAAGCCTTGGTTGAATGGGATCGTCTGCAGTGG
CTCCGTGCGGAGCACTATCAAACTAGGTTGACAAAGATGAGGCCGTTGTC
CTGCTCTCCGAAAAACGATGTGCTTATTGCCTGGCCAGAGAAGGGGGGAT
TGGAGTTCCACGGACATTGGCCACCGGATGAGTTAGCGAACGGGTTTGTC
CGCGACGTTGTGGATGGAAGTGTACTGAACGGACTTGGTGTCACTGAGGT
AAGGGAAGTGGAGCGGAGTTTAAGAGCTTTGGTCTGCGACGAGAACTCTA
GTGGTATTTATCGCTCGGCCATTGGTGCTGGCAAGAGGCGACGGAAAGTT
ATTCATGCTGTCGCAGAGTCTATGGGTTTGTGGCATCGAAGCGATGGCCG
AGGAGCGCAACGCACAGTAGTGGTGTCGCGGACCCCATATTGGCCTTTCT
TCTTTGACAACTACGTTGGGCTCGGTGGTCCCTTGGTGGAATCTATATGT
GCTGGGTTTATCAGCAAAGTCCCTCAACGTCTTTTGGAGCGCCGTGTCCT
GGTTCGAGGTCGACCTCATCACATCACCATCGTTCCACCTACGGAATTCA
ATCTCCTTGATTCAAGACTGAGAGATGATCGTGATTCGTGCCTCGAGTTC
GTTTCTCGACGATTATTTGGTACTTCTTTACAAGTTCTGGGCCTTGGACG
CGTTCAGTGCTCTTCGGTAGCAAACGGATTGATTGCATGGGATGGAAGTG
ACGTAGAGACTGCAATGAAGCCAGATGTGAAGTTCTCCCAACAGGAAGCG
TACTACGTTGTCGTCCAATGGCCAGAAGCGCAGCGGCTAAGAGATGAAAT
GGGTTTGCCGCGGAAGGATTTGCATATAACCTTGGGATTCACAGACAAGG
ACATCCATAACAGTCGAAAAGATGTCAAAACTTTAGTGTACCGAAATGAG
CGAGAACACGTCTTGCATGCCTTAAGTTAA
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protein sequence of Ggra5295.t1

>Ggra5295.t1 ID=Ggra5295.t1|Name=Ggra5295.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=510bp
MDLIICRPQWILLLKGMQTDQPPNMEFHQPVPTRSVHRYDTSSLSFLLWS
TPILTALSIAAERARRAQLNNVQTHHVSVQKLSLSFDIALALHACGGASD
AVISAAVRSKAALLVVPCCVGAVVSSRSKTTGAFSSIDPVQNSCGSSEIN
WHVSRSAVFRGLLKGSEYGCLVKAADFGEHGIDDWRKLSKALVEWDRLQW
LRAEHYQTRLTKMRPLSCSPKNDVLIAWPEKGGLEFHGHWPPDELANGFV
RDVVDGSVLNGLGVTEVREVERSLRALVCDENSSGIYRSAIGAGKRRRKV
IHAVAESMGLWHRSDGRGAQRTVVVSRTPYWPFFFDNYVGLGGPLVESIC
AGFISKVPQRLLERRVLVRGRPHHITIVPPTEFNLLDSRLRDDRDSCLEF
VSRRLFGTSLQVLGLGRVQCSSVANGLIAWDGSDVETAMKPDVKFSQQEA
YYVVVQWPEAQRLRDEMGLPRKDLHITLGFTDKDIHNSRKDVKTLVYRNE
REHVLHALS*
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mRNA from alignment at tig00000082_pilon:255680..257316+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5295.t1 ID=Ggra5295.t1|Name=Ggra5295.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1637bp|location=Sequence derived from alignment at tig00000082_pilon:255680..257316+ (Gracilaria gracilis GNS1m male)
ATGGATTTGATAATATGCCGCCCGCAGTGGATCCTGCTTCTAAAGGGCAT
GCAAACGGACCAGCCCCCAAATATGGAGTTCCACCAGCCCGTGCCGACAA
GAAGCGTGCACAGATACGATACCTCGTCTCTGTCCTTTCTGTTATGGTCG
ACGCCCATCCTGTAAGGAACCCAACAATAGTCGATCTTTGCGGCGGATGC
GGTCATGTCGCCCTTGCTGTCGCTTCACTTTTCCCTAACTCTTCGGTGCA
CATCGTTGACGAGAACAGAACAGCTCTTTCTATTGCCGCAGAGCGCGCCA
GAAGAGCGCAACTCAATAATGTTCAGACGCATCATGTCTCTGTACAGAAA
CTATCTCTTTCTTTTGACATTGCTCTAGCCTTGCATGCCTGCGGTGGTGC
GTCTGATGCCGTTATATCGGCTGCCGTCCGTTCCAAAGCTGCGCTTCTGG
TTGTTCCATGTTGTGTTGGTGCTGTAGTCTCATCGCGTTCGAAGACAACC
GGAGCGTTCTCTAGCATAGATCCAGTGCAGAATTCCTGTGGTAGTTCCGA
GATAAACTGGCATGTCTCGCGGAGTGCTGTGTTCAGAGGTTTGCTCAAAG
GGAGTGAGTACGGCTGTCTCGTGAAAGCTGCAGATTTCGGTGAACATGGT
ATCGATGATTGGCGGAAACTATCGAAAGCCTTGGTTGAATGGGATCGTCT
GCAGTGGCTCCGTGCGGAGCACTATCAAACTAGGTTGACAAAGATGAGGC
CGTTGTCCTGCTCTCCGAAAAACGATGTGCTTATTGCCTGGCCAGAGAAG
GGGGGATTGGAGTTCCACGGACATTGGCCACCGGATGAGTTAGCGAACGG
GTTTGTCCGCGACGTTGTGGATGGAAGTGTACTGAACGGACTTGGTGTCA
CTGAGGTAAGGGAAGTGGAGCGGAGTTTAAGAGCTTTGGTCTGCGACGAG
AACTCTAGTGGTATTTATCGCTCGGCCATTGGTGCTGGCAAGAGGCGACG
GAAAGTTATTCATGCTGTCGCAGAGTCTATGGGTTTGTGGCATCGAAGCG
ATGGCCGAGGAGCGCAACGCACAGTAGTGGTGTCGCGGACCCCATATTGG
CCTTTCTTCTTTGACAACTACGTTGGGCTCGGTGGTCCCTTGGTGGAATC
TATATGTGCTGGGTTTATCAGCAAAGTCCCTCAACGTCTTTTGGAGCGCC
GTGTCCTGGTTCGAGGTCGACCTCATCACATCACCATCGTTCCACCTACG
GAATTCAATCTCCTTGATTCAAGACTGAGAGATGATCGTGATTCGTGCCT
CGAGTTCGTTTCTCGACGATTATTTGGTACTTCTTTACAAGTTCTGGGCC
TTGGACGCGTTCAGTGCTCTTCGGTAGCAAACGGATTGATTGCATGGGAT
GGAAGTGACGTAGAGACTGCAATGAAGCCAGATGTGAAGTTCTCCCAACA
GGAAGCGTACTACGTTGTCGTCCAATGGCCAGAAGCGCAGCGGCTAAGAG
ATGAAATGGGTTTGCCGCGGAAGGATTTGCATATAACCTTGGGATTCACA
GACAAGGACATCCATAACAGTCGAAAAGATGTCAAAACTTTAGTGTACCG
AAATGAGCGAGAACACGTCTTGCATGCCTTAAGTTAA
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Coding sequence (CDS) from alignment at tig00000082_pilon:255680..257316+

>Ggra5295.t1 ID=Ggra5295.t1|Name=Ggra5295.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1530bp|location=Sequence derived from alignment at tig00000082_pilon:255680..257316+ (Gracilaria gracilis GNS1m male)
ATGGATTTGATAATATGCCGCCCGCAGTGGATCCTGCTTCTAAAGGGCAT
GCAAACGGACCAGCCCCCAAATATGGAGTTCCACCAGCCCGTGCCGACAA
GAAGCGTGCACAGATACGATACCTCGTCTCTGTCCTTTCTGTTATGGTCG
ACGCCCATCCTAACAGCTCTTTCTATTGCCGCAGAGCGCGCCAGAAGAGC
GCAACTCAATAATGTTCAGACGCATCATGTCTCTGTACAGAAACTATCTC
TTTCTTTTGACATTGCTCTAGCCTTGCATGCCTGCGGTGGTGCGTCTGAT
GCCGTTATATCGGCTGCCGTCCGTTCCAAAGCTGCGCTTCTGGTTGTTCC
ATGTTGTGTTGGTGCTGTAGTCTCATCGCGTTCGAAGACAACCGGAGCGT
TCTCTAGCATAGATCCAGTGCAGAATTCCTGTGGTAGTTCCGAGATAAAC
TGGCATGTCTCGCGGAGTGCTGTGTTCAGAGGTTTGCTCAAAGGGAGTGA
GTACGGCTGTCTCGTGAAAGCTGCAGATTTCGGTGAACATGGTATCGATG
ATTGGCGGAAACTATCGAAAGCCTTGGTTGAATGGGATCGTCTGCAGTGG
CTCCGTGCGGAGCACTATCAAACTAGGTTGACAAAGATGAGGCCGTTGTC
CTGCTCTCCGAAAAACGATGTGCTTATTGCCTGGCCAGAGAAGGGGGGAT
TGGAGTTCCACGGACATTGGCCACCGGATGAGTTAGCGAACGGGTTTGTC
CGCGACGTTGTGGATGGAAGTGTACTGAACGGACTTGGTGTCACTGAGGT
AAGGGAAGTGGAGCGGAGTTTAAGAGCTTTGGTCTGCGACGAGAACTCTA
GTGGTATTTATCGCTCGGCCATTGGTGCTGGCAAGAGGCGACGGAAAGTT
ATTCATGCTGTCGCAGAGTCTATGGGTTTGTGGCATCGAAGCGATGGCCG
AGGAGCGCAACGCACAGTAGTGGTGTCGCGGACCCCATATTGGCCTTTCT
TCTTTGACAACTACGTTGGGCTCGGTGGTCCCTTGGTGGAATCTATATGT
GCTGGGTTTATCAGCAAAGTCCCTCAACGTCTTTTGGAGCGCCGTGTCCT
GGTTCGAGGTCGACCTCATCACATCACCATCGTTCCACCTACGGAATTCA
ATCTCCTTGATTCAAGACTGAGAGATGATCGTGATTCGTGCCTCGAGTTC
GTTTCTCGACGATTATTTGGTACTTCTTTACAAGTTCTGGGCCTTGGACG
CGTTCAGTGCTCTTCGGTAGCAAACGGATTGATTGCATGGGATGGAAGTG
ACGTAGAGACTGCAATGAAGCCAGATGTGAAGTTCTCCCAACAGGAAGCG
TACTACGTTGTCGTCCAATGGCCAGAAGCGCAGCGGCTAAGAGATGAAAT
GGGTTTGCCGCGGAAGGATTTGCATATAACCTTGGGATTCACAGACAAGG
ACATCCATAACAGTCGAAAAGATGTCAAAACTTTAGTGTACCGAAATGAG
CGAGAACACGTCTTGCATGCCTTAAGTTAA
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