Ggra6531.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6531.t1
Unique NameGgra6531.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length219
Homology
BLAST of Ggra6531.t1 vs. uniprot
Match: A0A2V3J4A7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4A7_9FLOR)

HSP 1 Score: 202 bits (515), Expect = 1.370e-62
Identity = 122/211 (57.82%), Postives = 150/211 (71.09%), Query Frame = 0
Query:    1 MVVVLVNEQIRALLAEAHAEDEAVCRTTKHVQTVHHKAVASALRNSXXXXXXXXXXXXQSLAAVLATSQLYVTHEHACAVHIARERNAQLQARVERLQARAKDAEYARMVRDVARGDARNWEEREAARMSRFAPQMSLGVNVLVTMATCFTAGYYVFKHSTGSQTGALIGGVGAMIVAMAVEVILLLTRMYTIDKQEHAHVKRRQRRADGA 211
            MVV LVNE+IR +L  A + D AV RT K V+TV H+A+ +A+R               SL+++L++++LY++H+HAC   I   RN QLQARVERLQAR KDAEYAR++RDVAR DA N E  EAARMS+FAPQMSLGVNV+VTMATCFTAGY++FKHSTG+QTG L             EV+L+LTRMYTID     HVK+RQR AD A
Sbjct:    1 MVVALVNERIRKVLQVAQS-DHAVKRT-KDVETVTHRALVNAIRGQRNAP---------SLSSLLSSTELYLSHDHACKERIPHVRNPQLQARVERLQARMKDAEYARIIRDVARADASNVEI-EAARMSKFAPQMSLGVNVIVTMATCFTAGYFLFKHSTGTQTGGLXXXXXXXXXXXXXEVLLVLTRMYTIDTAVDQHVKKRQRMADRA 199          
BLAST of Ggra6531.t1 vs. uniprot
Match: A0A8J5XC23 (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XC23_DIALT)

HSP 1 Score: 70.1 bits (170), Expect = 4.960e-11
Identity = 44/116 (37.93%), Postives = 70/116 (60.34%), Query Frame = 0
Query:   84 RERNAQLQARVERLQARAKDAEYARMVRDVARGDARNWEEREAARMSRFAPQMSLGVNVLVTMATCFTAGYYVFKHSTGSQTG---ALIGGVGAMIVAMAVEVILLLTRMYTIDKQ 196
            RER+  L  R+E+L A  ++ EYARMVRD+    A   +E+ +  ++ F   M +GVN+LV++AT FTAG++V K+S G+       +IGG+ A    + +E  L + R   +DK+
Sbjct:   87 RERDPALVKRLEKLDAARQNEEYARMVRDITNHGAA--KEKLSTEIASFKASMGVGVNLLVSVATMFTAGWFVTKNSIGAGATDVLPIIGGLAAAAATLLLETWLFVIRTSRVDKE 200          
BLAST of Ggra6531.t1 vs. uniprot
Match: A0A7S2ZJE2 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZJE2_9RHOD)

HSP 1 Score: 68.2 bits (165), Expect = 2.770e-10
Identity = 58/217 (26.73%), Postives = 104/217 (47.93%), Query Frame = 0
Query:    1 MVVVLVNEQIRALLAEAHAEDEAVCRTTKHVQT-------------VHHKAVASALRNSXXXXXXXXXXXXQSLAAVLATSQLYVTHEHACAVHIARERNAQLQARVERLQARAKDAEYARMVRDVARGDARNWEEREAAR-MSRFAPQMSLGVNVLVTMATCFTAGYYVFKHSTGSQTGALIGGVGAMIVAMAVEVILLLTRMYTIDKQEHAHVKR 203
            MV V+VN++I+++L E+   D+   +    ++              +HH+ +A                   SL  +L+ ++L +  +H   V    ER  +L  R+ +L+   +  +Y  MV+DV+    RN     A   M     Q S+G+NV+VTM T +  G+++ +   GS    L GG+  +I+ + VE  L++TR+Y++DK     +KR
Sbjct:    1 MVFVIVNKEIKSVLEESRKRDDVSEKVRNELEAYFSGGSAKGEEGLIHHRTLAHVCEVGGL-----------SLEHLLSRTKLKLV-DHVPRVS---ERPKELDERLSKLRVELERKQYEAMVKDVS--GRRNDNSLTAGMDMVDLRNQTSVGLNVIVTMLTGYAVGHFLVRTYFGSSHYGLYGGLVGLIIGLGVEATLVITRIYSLDKDRELKIKR 200          
BLAST of Ggra6531.t1 vs. uniprot
Match: A0A7S0PZQ7 (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PZQ7_9EUKA)

HSP 1 Score: 63.5 bits (153), Expect = 1.170e-8
Identity = 41/116 (35.34%), Postives = 68/116 (58.62%), Query Frame = 0
Query:   84 RERNAQLQARVERLQARAKDAEYARMVRDVARGDARNWEEREAARMSRFAPQMSLGVNVLVTMATCFTAGYYVFKHSTGSQ-TGALIGGVGAMIVAMAVEVILLLTRMYTIDKQEH 198
            R+R+  L  R+E+++A  ++ EYA MV  ++ G++     R+ A MS +  QM +G+N+LV+M T F  GY++           A I G+G MIVA+A+E++L L     +D + H
Sbjct:   85 RKRDPALVKRLEKIRAVQENREYAAMVGQLSSGESTG---RDEAEMSTYRSQMGVGLNLLVSMGTMFCVGYFIGGCDENPHCVRAAICGLGLMIVAIAIEMLLFLIGASRVDAKMH 197          
BLAST of Ggra6531.t1 vs. uniprot
Match: A0A7S4NXS0 (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NXS0_9EUKA)

HSP 1 Score: 57.4 bits (137), Expect = 3.180e-6
Identity = 39/118 (33.05%), Postives = 68/118 (57.63%), Query Frame = 0
Query:   92 ARVERLQARAKDAEYARMVRDVARGDARNWEEREAARMSRFAPQMSLGVNVLVTMATCFTAGYYVFKHSTGSQTGALIG---GVGAMIVAMAVEVILLLTRMYTIDKQEHAHVKRRQR 206
            +++  L+ARA +AEY +MVR+V +     WE+ +   +S    Q+S+G+N++V+MAT  TAGY++ K     +   +IG   GV  M+V +  EV L + +   ++K      K R++
Sbjct:  172 SKLAELRARAANAEYEKMVRNVTQTKKDRWEK-DTRELSGMFSQLSVGLNIIVSMATTLTAGYWIGKLWVAPEK-PIIGIAIGVVFMVVVLMAEVWLFIFQSERLNKHLEKEKKEREK 287          
BLAST of Ggra6531.t1 vs. uniprot
Match: A0A0L0DT77 (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DT77_THETB)

HSP 1 Score: 56.2 bits (134), Expect = 3.900e-6
Identity = 39/101 (38.61%), Postives = 58/101 (57.43%), Query Frame = 0
Query:   90 LQARVERLQARAKDAEYARMVRDVARGDARNWEERE-AARMSRFAPQMSLGVNVLVTMATCFTAGYYVFKHSTGSQTGALIGGVGAMIVAMAVEVILLLTR 189
            L +R+ERL+A A DAEYARMV  +   + +   ERE A  ++    Q+S+GVN++V+MA  +  GY +     G   G  + G+ A I  M VE+ L + R
Sbjct:  105 LASRLERLRAAAGDAEYARMVARLP--EVQREAEREMAGEVATLGSQLSIGVNIIVSMAVMYAFGYTLGNWGWGGVLGPHLLGLAATIAIMLVEMWLFILR 203          
The following BLAST results are available for this feature:
BLAST of Ggra6531.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3J4A71.370e-6257.82Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A8J5XC234.960e-1137.93Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A7S2ZJE22.770e-1026.73Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0PZQ71.170e-835.34Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S4NXS03.180e-633.05Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A0L0DT773.900e-638.61Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 80..107
NoneNo IPR availablePANTHERPTHR31394:SF1TRANSMEMBRANE PROTEIN 199coord: 8..205
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 158..168
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 189..218
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 138..157
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 169..188
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..137
NoneNo IPR availableTMHMMTMhelixcoord: 137..156
NoneNo IPR availableTMHMMTMhelixcoord: 166..188
IPR021013ATPase, vacuolar ER assembly factor, Vma12PFAMPF11712Vma12coord: 83..193
e-value: 4.7E-12
score: 46.2
IPR021013ATPase, vacuolar ER assembly factor, Vma12PANTHERPTHR31394TRANSMEMBRANE PROTEIN 199coord: 8..205

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:177901..178557 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6531.t1Ggra6531.t1Gracilaria gracilis GNS1m malemRNAtig00000081_pilon 177901..178557 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6531.t1 ID=Ggra6531.t1|Name=Ggra6531.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=219bp
MVVVLVNEQIRALLAEAHAEDEAVCRTTKHVQTVHHKAVASALRNSNNKR
AAAAAAAAQSLAAVLATSQLYVTHEHACAVHIARERNAQLQARVERLQAR
AKDAEYARMVRDVARGDARNWEEREAARMSRFAPQMSLGVNVLVTMATCF
TAGYYVFKHSTGSQTGALIGGVGAMIVAMAVEVILLLTRMYTIDKQEHAH
VKRRQRRADGAALQPHQQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021013ATPase_Vma12