Ggra6531.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6531.t1
Unique NameGgra6531.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:177901..178557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog325452.fgenesh_scip_prom.46568.582
PFAMsVma12
Max annot lvl4776|Peronosporales
Evalue1.07e-05
EggNOG OGs2CAH1@1|root,2S38I@2759|Eukaryota,3QAP1@4776|Peronosporales
DescriptionEndoplasmic reticulum-based factor for assembly of V-ATPase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6531Ggra6531Gracilaria gracilis GNS1m malegenetig00000081_pilon 177901..178557 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6531.t1.start1Ggra6531.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 177901..177903 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6531.t1.CDS1Ggra6531.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 177901..178557 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6531.t1.exon1Ggra6531.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 177901..178557 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6531.t1.stop1Ggra6531.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 178555..178557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6531.t1Ggra6531.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 177901..178557 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6531.t1 ID=Ggra6531.t1|Name=Ggra6531.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=219bp
MVVVLVNEQIRALLAEAHAEDEAVCRTTKHVQTVHHKAVASALRNSNNKR
AAAAAAAAQSLAAVLATSQLYVTHEHACAVHIARERNAQLQARVERLQAR
AKDAEYARMVRDVARGDARNWEEREAARMSRFAPQMSLGVNVLVTMATCF
TAGYYVFKHSTGSQTGALIGGVGAMIVAMAVEVILLLTRMYTIDKQEHAH
VKRRQRRADGAALQPHQQ*
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spliced messenger RNA

>Ggra6531.t1 ID=Ggra6531.t1|Name=Ggra6531.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000081_pilon:177901..178557+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGTGGTGCTTGTAAACGAGCAAATCCGCGCGCTACTAGCAGAAGC
GCACGCTGAAGACGAAGCCGTGTGCAGGACGACCAAGCACGTGCAAACAG
TGCATCACAAGGCGGTGGCGAGCGCGCTGCGGAACAGCAACAACAAgcgc
gcggcggcggcggcggcggcggcgCAGTCGCTGGCAGCCGTACTGGCGAC
GTCGCAGCTGTACGTGACGCACGAGCACGCGTGCGCGGTGCACATTGCGC
GCGAGAGAAACGCGCAGCTGCAGGCGCGCGTAGAGCGGCTGCAAGCGCGC
GCCAAGGACGCCGAGTACGCGCGCATGGTGCGCGACGTTGCGCGCGGTGA
CGCGCGCAACTGGGAGGAGCGCGAGGCGGCGCGCATGAGCAGGTTTGCGC
CGCAGATGTCGCTCGGCGTCAACGTGCTGGTGACTATGGCCACCTGCTTC
ACGGCTGGCTACTACGTGTTCAAGCACAGCACGGGCTCGCAGACTGGTGC
GCTTATCGGCGGTGTGGGCGCTATGATTGTGGCAATGGCGGTGGAAGTGA
TTCTGCTGCTCACGAGGATGTATACGATTGACAAGCAAGAGCATGCGCAC
GTGAAACGGCGTCAACGCAGGGCGGATGGCGCTGCACTCCAACCTCATCA
GCAGTGA
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protein sequence of Ggra6531.t1

>Ggra6531.t1 ID=Ggra6531.t1|Name=Ggra6531.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=219bp
MVVVLVNEQIRALLAEAHAEDEAVCRTTKHVQTVHHKAVASALRNSNNKR
AAAAAAAAQSLAAVLATSQLYVTHEHACAVHIARERNAQLQARVERLQAR
AKDAEYARMVRDVARGDARNWEEREAARMSRFAPQMSLGVNVLVTMATCF
TAGYYVFKHSTGSQTGALIGGVGAMIVAMAVEVILLLTRMYTIDKQEHAH
VKRRQRRADGAALQPHQQ*
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mRNA from alignment at tig00000081_pilon:177901..178557+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6531.t1 ID=Ggra6531.t1|Name=Ggra6531.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000081_pilon:177901..178557+ (Gracilaria gracilis GNS1m male)
ATGGTGGTGGTGCTTGTAAACGAGCAAATCCGCGCGCTACTAGCAGAAGC
GCACGCTGAAGACGAAGCCGTGTGCAGGACGACCAAGCACGTGCAAACAG
TGCATCACAAGGCGGTGGCGAGCGCGCTGCGGAACAGCAACAACAAgcgc
gcggcggcggcggcggcggcggcgCAGTCGCTGGCAGCCGTACTGGCGAC
GTCGCAGCTGTACGTGACGCACGAGCACGCGTGCGCGGTGCACATTGCGC
GCGAGAGAAACGCGCAGCTGCAGGCGCGCGTAGAGCGGCTGCAAGCGCGC
GCCAAGGACGCCGAGTACGCGCGCATGGTGCGCGACGTTGCGCGCGGTGA
CGCGCGCAACTGGGAGGAGCGCGAGGCGGCGCGCATGAGCAGGTTTGCGC
CGCAGATGTCGCTCGGCGTCAACGTGCTGGTGACTATGGCCACCTGCTTC
ACGGCTGGCTACTACGTGTTCAAGCACAGCACGGGCTCGCAGACTGGTGC
GCTTATCGGCGGTGTGGGCGCTATGATTGTGGCAATGGCGGTGGAAGTGA
TTCTGCTGCTCACGAGGATGTATACGATTGACAAGCAAGAGCATGCGCAC
GTGAAACGGCGTCAACGCAGGGCGGATGGCGCTGCACTCCAACCTCATCA
GCAGTGA
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Coding sequence (CDS) from alignment at tig00000081_pilon:177901..178557+

>Ggra6531.t1 ID=Ggra6531.t1|Name=Ggra6531.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=657bp|location=Sequence derived from alignment at tig00000081_pilon:177901..178557+ (Gracilaria gracilis GNS1m male)
ATGGTGGTGGTGCTTGTAAACGAGCAAATCCGCGCGCTACTAGCAGAAGC
GCACGCTGAAGACGAAGCCGTGTGCAGGACGACCAAGCACGTGCAAACAG
TGCATCACAAGGCGGTGGCGAGCGCGCTGCGGAACAGCAACAACAAgcgc
gcggcggcggcggcggcggcggcgCAGTCGCTGGCAGCCGTACTGGCGAC
GTCGCAGCTGTACGTGACGCACGAGCACGCGTGCGCGGTGCACATTGCGC
GCGAGAGAAACGCGCAGCTGCAGGCGCGCGTAGAGCGGCTGCAAGCGCGC
GCCAAGGACGCCGAGTACGCGCGCATGGTGCGCGACGTTGCGCGCGGTGA
CGCGCGCAACTGGGAGGAGCGCGAGGCGGCGCGCATGAGCAGGTTTGCGC
CGCAGATGTCGCTCGGCGTCAACGTGCTGGTGACTATGGCCACCTGCTTC
ACGGCTGGCTACTACGTGTTCAAGCACAGCACGGGCTCGCAGACTGGTGC
GCTTATCGGCGGTGTGGGCGCTATGATTGTGGCAATGGCGGTGGAAGTGA
TTCTGCTGCTCACGAGGATGTATACGATTGACAAGCAAGAGCATGCGCAC
GTGAAACGGCGTCAACGCAGGGCGGATGGCGCTGCACTCCAACCTCATCA
GCAGTGA
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