Ggra6544.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6544.t1
Unique NameGgra6544.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length489
Homology
BLAST of Ggra6544.t1 vs. uniprot
Match: A0A2V3J580 (Cyclin-U2-2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J580_9FLOR)

HSP 1 Score: 378 bits (971), Expect = 7.020e-124
Identity = 211/385 (54.81%), Postives = 257/385 (66.75%), Query Frame = 0
Query:   33 RTRTAVLPRKISVPLVNCVSALAMVLNTALENRVEKGEQWLVAASASRASFDMAHLVRMAPKPMLTPCTAEQFGRMYRGALDVALSPFDLLNGTTLLVDIVNTVVYRTEIASSASIIACVYIDRLTAATPHMFVTHTNIQRLYAVAFTMAAKWLEDENYAPGSFADIFGIPAVELGRMEKWFAKAIGYNFFVTTEQFHDAQLALMAEALDSPSGLQVFQALLQHKVAMVHKAFDLAETWRKNSAVHAE---DGGMAVQRTLEQASALVTTEEDEECVDDDLWPST-LGRERRERRWSRGQHVVQELARAQRDHEFSHVPQEMRARYWMRYFTEKGLARYAKLDAIIKDEWVEDLVLPPLEYPEIPSFSVPNDPEPTPEIHDSRES 413
            R RT  +    ++PL+NC+ AL MVLNTAL NR EKGEQWL AA ASR  FD+A +V + PKPML+  T  Q G MYR AL V+ SPFDLL+G+  L  +V+ +V  T ++ SA +IA VYIDRLTAA PHMFVT TNIQRL+AVAF +AAKWLED  +    FAD FG+  VE+G++E+WFA +IGY  FV+TEQFHDAQ+ALMAEALDS SGL VF +LL H +A V KA  +A +W K  AV      D  M      + A  LV T  +E  +DD    +      R ERR  RGQ VVQELAR Q  H+FS  P+ + AR+W RYFTE GL RYAKLD I +DEWVE+L+LPPLE+PE P  S     E  P   D R+S
Sbjct:   52 RRRTTAMSPSFNIPLINCLPALLMVLNTALHNRAEKGEQWLNAACASRGPFDLALVVPLVPKPMLSGLTVSQIGHMYRAALGVSRSPFDLLSGSATLNGVVHHIVRHTNVSRSALVIAAVYIDRLTAAVPHMFVTRTNIQRLFAVAFVLAAKWLEDIFFPSNCFADFFGMHPVEMGQLERWFAASIGYRLFVSTEQFHDAQVALMAEALDSDSGLHVFHSLLHHNIAFVQKALHMAPSW-KELAVQPPAPCDNAMLWGSIWQTAGRLVETPGEESALDDAPGDAVGCNCVRTERRMVRGQEVVQELARVQLAHDFSVTPEGLFARHWQRYFTEIGLVRYAKLDRIARDEWVENLILPPLEHPEEPWGSWWPKVEVPPAEEDERDS 435          
BLAST of Ggra6544.t1 vs. uniprot
Match: A0A2V3J445 (Cyclin-U4-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J445_9FLOR)

HSP 1 Score: 233 bits (595), Expect = 4.350e-68
Identity = 158/383 (41.25%), Postives = 205/383 (53.52%), Query Frame = 0
Query:   85 MAHLVRMAPKPMLTPCTAEQFGRMYRGALDVALSPFDLLNGTTLLVDIVNTVVYRTEIASSASIIACVYIDRLTAATPHMFVTHTNIQRLYAVAFTMAAKWLEDENYAPGSFADIFGIPAVELGRMEKWFAKAIGYNFFVTTEQFHDAQLALMAEALDSPSGLQVFQALLQHKVAMVHKAFDLAETWRK---NSAVHAEDG------GMAV------QRTLEQASALVTTEEDEECVDDDLWPSTLGRERRERRWSRGQHVVQELARAQRDHEFSHVPQEMRARYWMRYFTEKGLARYAKLDAIIKDEWVEDLVLPPLE-YPEIPSFSVPNDPEPTPEIH---DSRESL---------GLGSLLVDGATVSSVATAVALGYSP 439
            MA LV   P P+L   T      +Y  AL    SPFDLLN +  L  +V+ VV+ T ++ SA + ACVYIDRLT A PHMFVT TN+QRL+AVAF +AAKW ED  ++   FA +FG+   EL  +E  F   I Y+ FVTTEQFHDAQ+ALMA ALDSP GL V+ AL+ H+VA  H AFDLA TWR+   +SAV            MA       Q  L Q        + +  V     P++            G+ VV  LARAQ  H+F  V +++      R FT+ G+ RYAKL  I + E ++DLVLPPLE  PE P   +P+   P        D R +          G G+ LV+ A+  +V+ +  L   P
Sbjct:    1 MAALVFAVPTPLLHTFTPAHLSTLYTAALRRTRSPFDLLNPSATLDAVVHHVVHNTTVSRSALVTACVYIDRLTQAAPHMFVTTTNVQRLFAVAFMLAAKWHEDAYFSSAYFAALFGMSLPELTTLESTFIHTIDYHLFVTTEQFHDAQVALMARALDSPQGLTVYHALVHHRVADSHNAFDLANTWRQVPLHSAVSVAQPPAHHVWAMAANLVRHRQHPLPQPPHRARPTQPQSTV-----PTSTA-------LCEGRRVVAALARAQLQHDFPQVCEQLYVSELQRRFTDDGIFRYAKLQLIGQSEELDDLVLPPLERLPEPPLVELPSPARPPXXXXXXCDRRGNALEERGHGVRGFGAFLVNAASCLTVSESTQLECEP 371          
BLAST of Ggra6544.t1 vs. uniprot
Match: A0A2V3JB77 (Cyclin-U4-3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3JB77_9FLOR)

HSP 1 Score: 203 bits (516), Expect = 5.100e-56
Identity = 132/422 (31.28%), Postives = 213/422 (50.47%), Query Frame = 0
Query:   42 KISVPLVNCVSALAMVLNTALENRVEKGEQWLVAASASRASFDMAHLVRMAPKPMLTPCTAEQFGRMYRGALDVALSPFDLLNGTTLLVDIVNTVVYRTEIASSASIIACVYIDRLTAATPHMFVTHTNIQRLYAVAFTMAAKWLEDENYAPGSFADIFGIPAVELGRMEKWFAKAIGYNFFVTTEQFHDAQLALMAEALDSPSGLQVFQALLQHKVAMVHKAFDLAETWR---KNS-AVHAEDGGMAVQRTLEQASALVTTEEDEECVDDDLWPSTLGRERRERRWSRGQHVVQELARAQRDHEFSHVPQEMRARYWMRYFTEKGLARYAKLDAIIKDEWVEDLVLPPLEYP--------EIPSFSVPNDPEPTPEIHDSRESLGLGSLLVDGATVSSVATAVALGYSPPPSLGIWQYVPP 451
            K+  PLV C + L +V+ T L + ++ G+ +   A+ S  S ++  LVR AP P L+  T   + R+Y  AL+  L+PF ++N    L D +  +V  T  ++S  + AC+Y+DRL  A PH+F+   NI +++AVAF +A K+ ED+      F+   GIP  EL ++E +F + I Y+ FV  + F D Q+ LMA A+ S +G+ V   L    ++ +  A+   + WR   KN+ + H  D  +     L                 +D+  S L     E + +R   ++ ELA  Q  H+F  +P +  A      +   G+ RYA L  + + E V+D+ LPPLEY         ++P+    +D +PT  +H      G GS LV+   V+++    + G S PP +G+W Y PP
Sbjct:   35 KVHYPLVTCATTLMLVIRTVLASLIDAGDTFARLAAHSHQSLNLIELVRAAPLPPLSTVTPHYYARLYHAALNTPLTPFHVVNPLPPLHDYIERLVELTAASNSVLLTACIYLDRLVVAEPHLFLRSANIHKMFAVAFMLAFKFHEDDYLTSHFFSPALGIPIEELNQLEVYFLRCINYHLFVKADDFRDTQITLMASAIHSENGIPVLHTLRHRGISDLAYAYSRMKPWRVYPKNAYSRHYTDSYLMSPDVL---------------GPEDIAMSFLHGAIVETKETRS--ILAELAAMQLHHDFPDLPPQPYAGALQCRYNHNGIVRYAILHLLSEMELVDDVTLPPLEYQWQASQERWKVPTVIARDDAQPTARVHAGE---GFGSFLVNAPHVAAMYGPQSDGESVPPGVGMWYYKPP 436          
BLAST of Ggra6544.t1 vs. uniprot
Match: A0A7S0T842 (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T842_9RHOD)

HSP 1 Score: 60.5 bits (145), Expect = 1.770e-6
Identity = 31/98 (31.63%), Postives = 53/98 (54.08%), Query Frame = 0
Query:  150 ACVYIDRLTAATPHMFVTHTNIQRLYAVAFTMAAKWLEDENYAPGSFADIFGIPAVELGRMEKWFAKAIGYNFFVTTEQFHDAQLALMAEALDSPSGL 247
            A +YI+R  +  P + ++ TN+ RL   A  +AAK+ +D  Y    +A + GIP  E+  +E  F  A+G+  FV+ E+F   +  ++ E L   + L
Sbjct:  113 AFIYIERGASYQPSLRLSPTNVHRLIITAVMLAAKFFDDVYYNNAYYAKVGGIPLQEINLLETEFLMAVGFELFVSEEEFIRFETDVVDEVLSDRTSL 210          
The following BLAST results are available for this feature:
BLAST of Ggra6544.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J5807.020e-12454.81Cyclin-U2-2 n=1 Tax=Gracilariopsis chorda TaxID=44... [more]
A0A2V3J4454.350e-6841.25Cyclin-U4-1 n=1 Tax=Gracilariopsis chorda TaxID=44... [more]
A0A2V3JB775.100e-5631.28Cyclin-U4-3 n=1 Tax=Gracilariopsis chorda TaxID=44... [more]
A0A7S0T8421.770e-631.63Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.472.10coord: 129..278
e-value: 2.8E-21
score: 77.9
IPR013922Cyclin PHO80-likePFAMPF08613Cyclincoord: 145..221
e-value: 2.9E-11
score: 44.0
IPR013922Cyclin PHO80-likePANTHERPTHR15615UNCHARACTERIZEDcoord: 58..284
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 128..221

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:225523..226989 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6544.t1Ggra6544.t1Gracilaria gracilis GNS1m malemRNAtig00000081_pilon 225523..226989 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6544.t1 ID=Ggra6544.t1|Name=Ggra6544.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=489bp
MNPSMVPPTSNTAVAQSAIAASPASVISQALHRTRTAVLPRKISVPLVNC
VSALAMVLNTALENRVEKGEQWLVAASASRASFDMAHLVRMAPKPMLTPC
TAEQFGRMYRGALDVALSPFDLLNGTTLLVDIVNTVVYRTEIASSASIIA
CVYIDRLTAATPHMFVTHTNIQRLYAVAFTMAAKWLEDENYAPGSFADIF
GIPAVELGRMEKWFAKAIGYNFFVTTEQFHDAQLALMAEALDSPSGLQVF
QALLQHKVAMVHKAFDLAETWRKNSAVHAEDGGMAVQRTLEQASALVTTE
EDEECVDDDLWPSTLGRERRERRWSRGQHVVQELARAQRDHEFSHVPQEM
RARYWMRYFTEKGLARYAKLDAIIKDEWVEDLVLPPLEYPEIPSFSVPND
PEPTPEIHDSRESLGLGSLLVDGATVSSVATAVALGYSPPPSLGIWQYVP
PRNTERRPPDRYGSSSATSYPFGEGLHRGWGFWCPIPG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013922Cyclin_PHO80-like
IPR036915Cyclin-like_sf