Ggra6530.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra6530.t1
Unique Name	Ggra6530.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	94

Homology

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BLAST of Ggra6530.t1 vs. uniprot
Match: A0A2V3J435 (Serine palmitoyltransferase small subunit A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J435_9FLOR)

HSP 1 Score: 114 bits (284), Expect = 3.930e-31
Identity = 53/67 (79.10%), Postives = 63/67 (94.03%), Query Frame = 0

Query:   27 PPSTRTLKQSLNLWIYRYNLSTALYMLQPWERALFNIIVIAILAYIVYGLYYAALHPLFERLAISYM 93
            PP TR+ K+S++LW+YRYNLSTALYML+PWERALFNI+VI+ILAY VYGLYY+ALHPLFER+A SYM
Sbjct:   26 PPRTRSFKESVSLWVYRYNLSTALYMLEPWERALFNIVVISILAYTVYGLYYSALHPLFERIATSYM 92

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BLAST of Ggra6530.t1 vs. uniprot
Match: I1CUC0 (Uncharacterized protein n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1CUC0_RHIO9)

HSP 1 Score: 49.3 bits (116), Expect = 6.000e-6
Identity = 22/42 (52.38%), Postives = 34/42 (80.95%), Query Frame = 0

Query:   29 STRTLKQSLNLWIYRYNLSTALYMLQPWERALFNIIVIAILA 70
            S R++ + L+  +Y+Y L TALYML+PWE+ALFN I+++IL+
Sbjct:    3 SNRSISKFLSTKLYQYELQTALYMLEPWEKALFNTIMLSILS 44

The following BLAST results are available for this feature:

BLAST of Ggra6530.t1 vs. uniprot

BLAST of Ggra6530.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J435	3.930e-31	79.10	Serine palmitoyltransferase small subunit A n=1 Ta...	[more]
I1CUC0	6.000e-6	52.38	Uncharacterized protein n=1 Tax=Rhizopus delemar (...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024512	Small subunit of serine palmitoyltransferase-like	PFAM	PF11779	SPT_ssu-like	coord: 36..77 e-value: 4.9E-14 score: 51.7
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 59..80
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..58
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 81..93
None	No IPR available	TMHMM	TMhelix		coord: 59..81

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000081_pilon	contig	tig00000081_pilon:177173..177554 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6530.t1	Ggra6530.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000081_pilon 177173..177554 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra6530.t1 ID=Ggra6530.t1|Name=Ggra6530.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=94bp
MTRQATVVAPSSSLHHTYGTAPATLPPPSTRTLKQSLNLWIYRYNLSTAL
YMLQPWERALFNIIVIAILAYIVYGLYYAALHPLFERLAISYM*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR024512	Ser_palmitoyltrfase_ssu-like