|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005708927.1 |
| PFAMs | CTD_bind |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K12879,ko:K14400 |
| KEGG Pathway | ko03013,ko03015,ko03040,map03013,map03015,map03040 |
| KEGG Module | M00405,M00406 |
| Evalue | 6.75e-30 |
| EggNOG OGs | KOG2071@1|root,KOG2071@2759|Eukaryota |
| Description | termination of RNA polymerase II transcription |
| COG category | S |
| BRITE | ko00000,ko00001,ko00002,ko03019,ko03021,ko03041 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra6529.t1.start1 | Ggra6529.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000081_pilon 173964..173966 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra6529.t1.stop1 | Ggra6529.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000081_pilon 176535..176537 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra6529.t1 ID=Ggra6529.t1|Name=Ggra6529.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=858bp MFHQSNFVANAAPQPPAARPPPPRPPLDLSSIPPQLQAAALEYDAFLNDL TWNSKQVINQLTTIAAENIPAADAISSVIEQRIFNAPPQTKLPYLYLMDS IVKNVGRRYLSRFAENLFHTFTNSYAVASSSMRMSLRRMLSTWPDIYGFE LVNAMTTRADQCDATPYAPMHAPPPPAVRMPAQQPAQYYAPQQPRMHMPH HAPEPRAQPPIPSLRSQPVRPPAASTPQLPHGAGRGLPMRPALHSNGAPP PALPPPPQEFVELETMMTQVIRNASMGTLPSNHQLFTLNRMITTQLQSSA THLQRSALMRYQQQLREISSAPRHRAAPAPKTSHISAPPPAPPSTSQVPG PHVSATLTNLLRAMPPGLLHTVQSVAHSSHPLPPASIGSLPSPAAMARPS RVPRRLPDAVGPSYSAPSSSTVLTFAELKGMSHHAGVRSLYTDLPYLSKS DGMRFATKEALREHLDWLFRQNRRKRGTKEQVVVGGQSRGWFDTLDVFLG NVDPNAKPTNPSVNKKTVADENDDRTVSVVESMSDNDICAACHEAFETFW DDDKHAWMLRDCTKTDDDELYHVKCMQYAALAADEAADEAADEAADEAAD EAAGEAADVPAPQQPEEEKPKLENGNLDAALTTTNNNNNNNNDNKPLETQ QTNTNSETPPEPSTTATEISAPAATTKEEPLPAVHTPYNEGMVSQISIPK TEPNMTSVDDQGLNHLRTAAHVMPHKQEPLMSAPGDVINICASPMQGLTM VSPGNVAASDVQGKVIISKVPKWLAATTGIKVMHLEPARKEEARFASTSP PSGQKRRRSEVEGARLELDNANVNSMAALTPPSLATNEEDVEPERKRQKE CSAQTNT* back to topspliced messenger RNA >Ggra6529.t1 ID=Ggra6529.t1|Name=Ggra6529.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2574bp|location=Sequence derived from alignment at tig00000081_pilon:173964..176537+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGTTCCACCAGTCCAACTTCGTTGCCAACGCCGCGCCCCAGCCGCCCGC CGCCCGGCCACCGCCGCCCCGCCCTCCCCTCGATCTTTCCTCCATTCCCC CTCAACTACAGGCAGCTGCTCTCGAGTACGACGCCTTCCTAAATGACCTC ACTTGGAACTCCAAACAGGTCATCAACCAGCTCACCACCATCGCTGCCGA GAATATTCCTGCTGCCGATGCCATTAGTTCCGTTATCGAGCAGCGCATTT TCAACGCCCCCCCGCAGACCAAGCTTCCATACCTCTACCTAATGGATTCT ATTGTGAAGAACGTCGGCAGAAGGTATCTCTCGCGTTTCGCAGAGAATCT CTTTCACACCTTCACGAATTCCTACGCCGTCGCCTCCTCTTCCATGCGCA TGTCCCTGCGTAGAATGCTCAGCACCTGGCCGGACATCTATGGCTTCGAG CTCGTCAACGCCATGACAACAAGAGCCGATCAGTGCGATGCCACCCCGTA CGCCCCTATGCACGCGCCCCCTCCACCTGCGGTGCGCATGCCCGCACAAC AACCGGCGCAGTACTATGCGCCGCAGCAGCCGCGCATGCACATGCCGCAT CACGCCCCGGAACCGCGTGCGCAACCACCGATTCCTTCACTGCGATCTCA GCCCGTTCGACCGCCAGCTGCTTCTACTCCTCAGTTGCCTCATGGTGCAG GAAGAGGCTTACCGATGCGCCCCGCGTTGCATTCGAATGGTGCGCCCCCG CCAGCTCTACCGCCACCGCCGCAGGAGTTTGTGGAGTTGGAAACGATGAT GACACAGGTAATTAGAAATGCTAGCATGGGAACTCTCCCATCAAACCACC AGTTGTTTACTCTCAACAGGATGATTACCACACAGCTCCAATCCTCTGCC ACCCATCTACAGCGAAGCGCCTTAATGCGTTACCAGCAACAGCTGCGCGA AATCTCTTCCGCCCCTCGTCACCGCGCTGCGCCTGCTCCCAAAACTTCTC ACATCAGCGCCCCTCCTCCCGCGCCCCCCTCTACTTCGCAAGTCCCGGGT CCGCACGTCTCTGCCACCCTTACCAATTTGCTCCGCGCAATGCCCCCAGG GCTGCTCCACACAGTGCAGTCTGTAGCACATTCGTCTCACCCTCTTCCTC CTGCCAGTATCGGCAGTCTTCCTTCCCCAGCGGCTATGGCCCGACCTTCG CGGGTGCCTCGACGCCTCCCCGACGCCGTTGGCCCGTCGTATTCCGCGCC TTCTTCTTCCACTGTGCTAACTTTTGCCGAACTGAAGGGCATGTCTCATC ACGCGGGCGTTCGATCATTATACACCGACTTGCCGTATCTTTCCAAGAGC GACGGCATGCGATTCGCCACCAAGGAAGCGTTGCGGGAACATCTTGATTG GCTTTTCCGACAGAATCGTCGCAAGAGGGGAACGAAGGAACAGGTGGTTG TGGGTGGTCAATCTCGGGGTTGGTTTGACACACTGGACGTCTTCCTTGGG AACGTTGATCCTAACGCAAAACCAACGAACCCTTCTGTAAATAAGAAAAC TGTAGCAGACGAAAACGACGATAGAACCGTGTCTGTTGTTGAATCCATGT CTGATAACGACATATGCGCCGCTTGCCATGAGGCGTTTGAAACCTTTTGG GATGACGACAAACACGCTTGGATGTTGCGTGACTGCACAAAAACTGACGA CGACGAGCTGTACCACGTAAAGTGCATGCAATACGCAGCTCTTGCTGCTG ATGAGGCTGCTGATGAGGCTGCTGATGAGGCTGCTGATGAGGCTGCTGAT GAGGCTGCTGGTGAGGCTGCTGATGTGCCGGCTCCCCAGCAGCCGGAGGA AGAAAAGCCGAAGCTTGAGAATGGGAATTTAGACGCGGCGCTaacaacta cgaacaacaacaacaacaacaacaacgacaacaaGCCATTGGAAACTCAA CAAACTAACACTAACTCTGAAACACCACCGGAGCCATCGACGACAGCTAC TGAAATTTCAGCACCCGCTGCAACGACCAAAGAAGAACCGCTGCCAGCTG TTCACACTCCCTATAATGAAGGCATGGTGTCTCAGATAAGCATACCGAAA ACTGAACCCAACATGACTTCAGTTGACGATCAAGGGCTTAACCATCTACG CACGGCGGCCCATGTCATGCCGCATAAACAAGAACCGCTCATGTCTGCAC CCGGTGATGTAATCAACATTTGTGCTAGTCCTATGCAGGGGTTGACCATG GTTTCTCCAGGCAATGTGGCCGCGTCGGATGTGCAAGGGAAGGTCATCAT CTCCAAGGTACCAAAGTGGCTTGCGGCAACAACTGGCATAAAGGTTATGC ACTTGGAGCCGGCAAGGAAAGAAGAAGCTAGATTCGCTTCGACATCACCA CCGTCTGGTCAAAAGAGAAGGAGATCAGAAGTGGAGGGCGCTAGACTTGA GCTCGACAATGCGAATGTTAACAGCATGGCTGCCCTCACACCGCCATCGC TGGCGACTAATGAAGAAGACGTTGAGCCTGAGCGCAAGCGTCAGAAAGAA TGTAGTGCACAGACAAATACATGA back to topprotein sequence of Ggra6529.t1 >Ggra6529.t1 ID=Ggra6529.t1|Name=Ggra6529.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=858bp
MFHQSNFVANAAPQPPAARPPPPRPPLDLSSIPPQLQAAALEYDAFLNDL TWNSKQVINQLTTIAAENIPAADAISSVIEQRIFNAPPQTKLPYLYLMDS IVKNVGRRYLSRFAENLFHTFTNSYAVASSSMRMSLRRMLSTWPDIYGFE LVNAMTTRADQCDATPYAPMHAPPPPAVRMPAQQPAQYYAPQQPRMHMPH HAPEPRAQPPIPSLRSQPVRPPAASTPQLPHGAGRGLPMRPALHSNGAPP PALPPPPQEFVELETMMTQVIRNASMGTLPSNHQLFTLNRMITTQLQSSA THLQRSALMRYQQQLREISSAPRHRAAPAPKTSHISAPPPAPPSTSQVPG PHVSATLTNLLRAMPPGLLHTVQSVAHSSHPLPPASIGSLPSPAAMARPS RVPRRLPDAVGPSYSAPSSSTVLTFAELKGMSHHAGVRSLYTDLPYLSKS DGMRFATKEALREHLDWLFRQNRRKRGTKEQVVVGGQSRGWFDTLDVFLG NVDPNAKPTNPSVNKKTVADENDDRTVSVVESMSDNDICAACHEAFETFW DDDKHAWMLRDCTKTDDDELYHVKCMQYAALAADEAADEAADEAADEAAD EAAGEAADVPAPQQPEEEKPKLENGNLDAALTTTNNNNNNNNDNKPLETQ QTNTNSETPPEPSTTATEISAPAATTKEEPLPAVHTPYNEGMVSQISIPK TEPNMTSVDDQGLNHLRTAAHVMPHKQEPLMSAPGDVINICASPMQGLTM VSPGNVAASDVQGKVIISKVPKWLAATTGIKVMHLEPARKEEARFASTSP PSGQKRRRSEVEGARLELDNANVNSMAALTPPSLATNEEDVEPERKRQKE CSAQTNT* back to topmRNA from alignment at tig00000081_pilon:173964..176537+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra6529.t1 ID=Ggra6529.t1|Name=Ggra6529.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2574bp|location=Sequence derived from alignment at tig00000081_pilon:173964..176537+ (Gracilaria gracilis GNS1m male) ATGTTCCACCAGTCCAACTTCGTTGCCAACGCCGCGCCCCAGCCGCCCGC
CGCCCGGCCACCGCCGCCCCGCCCTCCCCTCGATCTTTCCTCCATTCCCC
CTCAACTACAGGCAGCTGCTCTCGAGTACGACGCCTTCCTAAATGACCTC
ACTTGGAACTCCAAACAGGTCATCAACCAGCTCACCACCATCGCTGCCGA
GAATATTCCTGCTGCCGATGCCATTAGTTCCGTTATCGAGCAGCGCATTT
TCAACGCCCCCCCGCAGACCAAGCTTCCATACCTCTACCTAATGGATTCT
ATTGTGAAGAACGTCGGCAGAAGGTATCTCTCGCGTTTCGCAGAGAATCT
CTTTCACACCTTCACGAATTCCTACGCCGTCGCCTCCTCTTCCATGCGCA
TGTCCCTGCGTAGAATGCTCAGCACCTGGCCGGACATCTATGGCTTCGAG
CTCGTCAACGCCATGACAACAAGAGCCGATCAGTGCGATGCCACCCCGTA
CGCCCCTATGCACGCGCCCCCTCCACCTGCGGTGCGCATGCCCGCACAAC
AACCGGCGCAGTACTATGCGCCGCAGCAGCCGCGCATGCACATGCCGCAT
CACGCCCCGGAACCGCGTGCGCAACCACCGATTCCTTCACTGCGATCTCA
GCCCGTTCGACCGCCAGCTGCTTCTACTCCTCAGTTGCCTCATGGTGCAG
GAAGAGGCTTACCGATGCGCCCCGCGTTGCATTCGAATGGTGCGCCCCCG
CCAGCTCTACCGCCACCGCCGCAGGAGTTTGTGGAGTTGGAAACGATGAT
GACACAGGTAATTAGAAATGCTAGCATGGGAACTCTCCCATCAAACCACC
AGTTGTTTACTCTCAACAGGATGATTACCACACAGCTCCAATCCTCTGCC
ACCCATCTACAGCGAAGCGCCTTAATGCGTTACCAGCAACAGCTGCGCGA
AATCTCTTCCGCCCCTCGTCACCGCGCTGCGCCTGCTCCCAAAACTTCTC
ACATCAGCGCCCCTCCTCCCGCGCCCCCCTCTACTTCGCAAGTCCCGGGT
CCGCACGTCTCTGCCACCCTTACCAATTTGCTCCGCGCAATGCCCCCAGG
GCTGCTCCACACAGTGCAGTCTGTAGCACATTCGTCTCACCCTCTTCCTC
CTGCCAGTATCGGCAGTCTTCCTTCCCCAGCGGCTATGGCCCGACCTTCG
CGGGTGCCTCGACGCCTCCCCGACGCCGTTGGCCCGTCGTATTCCGCGCC
TTCTTCTTCCACTGTGCTAACTTTTGCCGAACTGAAGGGCATGTCTCATC
ACGCGGGCGTTCGATCATTATACACCGACTTGCCGTATCTTTCCAAGAGC
GACGGCATGCGATTCGCCACCAAGGAAGCGTTGCGGGAACATCTTGATTG
GCTTTTCCGACAGAATCGTCGCAAGAGGGGAACGAAGGAACAGGTGGTTG
TGGGTGGTCAATCTCGGGGTTGGTTTGACACACTGGACGTCTTCCTTGGG
AACGTTGATCCTAACGCAAAACCAACGAACCCTTCTGTAAATAAGAAAAC
TGTAGCAGACGAAAACGACGATAGAACCGTGTCTGTTGTTGAATCCATGT
CTGATAACGACATATGCGCCGCTTGCCATGAGGCGTTTGAAACCTTTTGG
GATGACGACAAACACGCTTGGATGTTGCGTGACTGCACAAAAACTGACGA
CGACGAGCTGTACCACGTAAAGTGCATGCAATACGCAGCTCTTGCTGCTG
ATGAGGCTGCTGATGAGGCTGCTGATGAGGCTGCTGATGAGGCTGCTGAT
GAGGCTGCTGGTGAGGCTGCTGATGTGCCGGCTCCCCAGCAGCCGGAGGA
AGAAAAGCCGAAGCTTGAGAATGGGAATTTAGACGCGGCGCTaacaacta
cgaacaacaacaacaacaacaacaacgacaacaaGCCATTGGAAACTCAA
CAAACTAACACTAACTCTGAAACACCACCGGAGCCATCGACGACAGCTAC
TGAAATTTCAGCACCCGCTGCAACGACCAAAGAAGAACCGCTGCCAGCTG
TTCACACTCCCTATAATGAAGGCATGGTGTCTCAGATAAGCATACCGAAA
ACTGAACCCAACATGACTTCAGTTGACGATCAAGGGCTTAACCATCTACG
CACGGCGGCCCATGTCATGCCGCATAAACAAGAACCGCTCATGTCTGCAC
CCGGTGATGTAATCAACATTTGTGCTAGTCCTATGCAGGGGTTGACCATG
GTTTCTCCAGGCAATGTGGCCGCGTCGGATGTGCAAGGGAAGGTCATCAT
CTCCAAGGTACCAAAGTGGCTTGCGGCAACAACTGGCATAAAGGTTATGC
ACTTGGAGCCGGCAAGGAAAGAAGAAGCTAGATTCGCTTCGACATCACCA
CCGTCTGGTCAAAAGAGAAGGAGATCAGAAGTGGAGGGCGCTAGACTTGA
GCTCGACAATGCGAATGTTAACAGCATGGCTGCCCTCACACCGCCATCGC
TGGCGACTAATGAAGAAGACGTTGAGCCTGAGCGCAAGCGTCAGAAAGAA
TGTAGTGCACAGACAAATACATGA back to topCoding sequence (CDS) from alignment at tig00000081_pilon:173964..176537+ >Ggra6529.t1 ID=Ggra6529.t1|Name=Ggra6529.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2574bp|location=Sequence derived from alignment at tig00000081_pilon:173964..176537+ (Gracilaria gracilis GNS1m male) ATGTTCCACCAGTCCAACTTCGTTGCCAACGCCGCGCCCCAGCCGCCCGC CGCCCGGCCACCGCCGCCCCGCCCTCCCCTCGATCTTTCCTCCATTCCCC CTCAACTACAGGCAGCTGCTCTCGAGTACGACGCCTTCCTAAATGACCTC ACTTGGAACTCCAAACAGGTCATCAACCAGCTCACCACCATCGCTGCCGA GAATATTCCTGCTGCCGATGCCATTAGTTCCGTTATCGAGCAGCGCATTT TCAACGCCCCCCCGCAGACCAAGCTTCCATACCTCTACCTAATGGATTCT ATTGTGAAGAACGTCGGCAGAAGGTATCTCTCGCGTTTCGCAGAGAATCT CTTTCACACCTTCACGAATTCCTACGCCGTCGCCTCCTCTTCCATGCGCA TGTCCCTGCGTAGAATGCTCAGCACCTGGCCGGACATCTATGGCTTCGAG CTCGTCAACGCCATGACAACAAGAGCCGATCAGTGCGATGCCACCCCGTA CGCCCCTATGCACGCGCCCCCTCCACCTGCGGTGCGCATGCCCGCACAAC AACCGGCGCAGTACTATGCGCCGCAGCAGCCGCGCATGCACATGCCGCAT CACGCCCCGGAACCGCGTGCGCAACCACCGATTCCTTCACTGCGATCTCA GCCCGTTCGACCGCCAGCTGCTTCTACTCCTCAGTTGCCTCATGGTGCAG GAAGAGGCTTACCGATGCGCCCCGCGTTGCATTCGAATGGTGCGCCCCCG CCAGCTCTACCGCCACCGCCGCAGGAGTTTGTGGAGTTGGAAACGATGAT GACACAGGTAATTAGAAATGCTAGCATGGGAACTCTCCCATCAAACCACC AGTTGTTTACTCTCAACAGGATGATTACCACACAGCTCCAATCCTCTGCC ACCCATCTACAGCGAAGCGCCTTAATGCGTTACCAGCAACAGCTGCGCGA AATCTCTTCCGCCCCTCGTCACCGCGCTGCGCCTGCTCCCAAAACTTCTC ACATCAGCGCCCCTCCTCCCGCGCCCCCCTCTACTTCGCAAGTCCCGGGT CCGCACGTCTCTGCCACCCTTACCAATTTGCTCCGCGCAATGCCCCCAGG GCTGCTCCACACAGTGCAGTCTGTAGCACATTCGTCTCACCCTCTTCCTC CTGCCAGTATCGGCAGTCTTCCTTCCCCAGCGGCTATGGCCCGACCTTCG CGGGTGCCTCGACGCCTCCCCGACGCCGTTGGCCCGTCGTATTCCGCGCC TTCTTCTTCCACTGTGCTAACTTTTGCCGAACTGAAGGGCATGTCTCATC ACGCGGGCGTTCGATCATTATACACCGACTTGCCGTATCTTTCCAAGAGC GACGGCATGCGATTCGCCACCAAGGAAGCGTTGCGGGAACATCTTGATTG GCTTTTCCGACAGAATCGTCGCAAGAGGGGAACGAAGGAACAGGTGGTTG TGGGTGGTCAATCTCGGGGTTGGTTTGACACACTGGACGTCTTCCTTGGG AACGTTGATCCTAACGCAAAACCAACGAACCCTTCTGTAAATAAGAAAAC TGTAGCAGACGAAAACGACGATAGAACCGTGTCTGTTGTTGAATCCATGT CTGATAACGACATATGCGCCGCTTGCCATGAGGCGTTTGAAACCTTTTGG GATGACGACAAACACGCTTGGATGTTGCGTGACTGCACAAAAACTGACGA CGACGAGCTGTACCACGTAAAGTGCATGCAATACGCAGCTCTTGCTGCTG ATGAGGCTGCTGATGAGGCTGCTGATGAGGCTGCTGATGAGGCTGCTGAT GAGGCTGCTGGTGAGGCTGCTGATGTGCCGGCTCCCCAGCAGCCGGAGGA AGAAAAGCCGAAGCTTGAGAATGGGAATTTAGACGCGGCGCTaacaacta cgaacaacaacaacaacaacaacaacgacaacaaGCCATTGGAAACTCAA CAAACTAACACTAACTCTGAAACACCACCGGAGCCATCGACGACAGCTAC TGAAATTTCAGCACCCGCTGCAACGACCAAAGAAGAACCGCTGCCAGCTG TTCACACTCCCTATAATGAAGGCATGGTGTCTCAGATAAGCATACCGAAA ACTGAACCCAACATGACTTCAGTTGACGATCAAGGGCTTAACCATCTACG CACGGCGGCCCATGTCATGCCGCATAAACAAGAACCGCTCATGTCTGCAC CCGGTGATGTAATCAACATTTGTGCTAGTCCTATGCAGGGGTTGACCATG GTTTCTCCAGGCAATGTGGCCGCGTCGGATGTGCAAGGGAAGGTCATCAT CTCCAAGGTACCAAAGTGGCTTGCGGCAACAACTGGCATAAAGGTTATGC ACTTGGAGCCGGCAAGGAAAGAAGAAGCTAGATTCGCTTCGACATCACCA CCGTCTGGTCAAAAGAGAAGGAGATCAGAAGTGGAGGGCGCTAGACTTGA GCTCGACAATGCGAATGTTAACAGCATGGCTGCCCTCACACCGCCATCGC TGGCGACTAATGAAGAAGACGTTGAGCCTGAGCGCAAGCGTCAGAAAGAA TGTAGTGCACAGACAAATACATGA back to top
|