Ggra6607.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6607.t1
Unique NameGgra6607.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length455
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:546971..549822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT560CT
PFAMsCMAS,Methyltransf_11,Methyltransf_23,Methyltransf_25
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC01662
KEGG koko:K05928
KEGG ReactionR07236,R07504,R10491,R10492
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00112
Evalue4.25e-67
EggNOG OGsCOG0500@1|root,KOG1269@2759|Eukaryota
EC2.1.1.95
Descriptionsterol 24-C-methyltransferase activity
COG categoryQ
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6607Ggra6607Gracilaria gracilis GNS1m malegenetig00000081_pilon 546971..549822 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6607.t1Ggra6607.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 546971..549822 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6607.t1.stop1Ggra6607.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 546971..546973 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6607.t1.CDS1Ggra6607.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 546971..548168 -
Ggra6607.t1.CDS2Ggra6607.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000081_pilon 549573..549625 -
Ggra6607.t1.CDS3Ggra6607.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000081_pilon 549709..549822 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6607.t1.exon1Ggra6607.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 546971..548168 -
Ggra6607.t1.exon2Ggra6607.t1.exon2Gracilaria gracilis GNS1m maleexontig00000081_pilon 549573..549625 -
Ggra6607.t1.exon3Ggra6607.t1.exon3Gracilaria gracilis GNS1m maleexontig00000081_pilon 549709..549822 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6607.t1.intron1Ggra6607.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000081_pilon 548169..549572 -
Ggra6607.t1.intron2Ggra6607.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000081_pilon 549626..549708 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6607.t1.start1Ggra6607.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 549820..549822 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6607.t1 ID=Ggra6607.t1|Name=Ggra6607.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=455bp
MASDKARKRVVNPLQHCAAEKARYDACFKHWYHAKFLKGCLETSSECEHR
FEELQVPSITVPNQDRVALPRMAAATPQQPNFFKRKTVEKVHVTRDPSGF
PVLQIDQVPKRLIPLWLLVIIAVAASWLLRRFIMLKCLAQKYVRKDLKKD
IAHFYDSRSAAWETVWGEHMHHGLYDVVDSKRMTGQPAQIRTMSELLKLC
NAMNLNLPPGSRILDLGCGIGGASRFLARHFGESCHVTGITLSPQQANRA
NELNKEKRLETRVRNEVRDALNSGFPDEEFEIVWSLESGEHIENKPLLMK
ECARMLKPGGRLVMLAWCVRESTPSLTLSERYSIRQIMEEYCLPRVSPPS
EYETEMIRAGFRNVKVEDWTKRAAPFWGEVVRSAFFNPLGWKMLFKYKWP
LVRSALAMRHVISGIRQGVFRLVAFSATKASEEDIEKEKAAVGTLKCRNE
NDLP*
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spliced messenger RNA

>Ggra6607.t1 ID=Ggra6607.t1|Name=Ggra6607.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00000081_pilon:546971..549822- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCTGACAAGGCACGCAAGCGAGTTGTGAACCCGCTGCAACACTG
CGCCGCGGAAAAGGCTCGCTACGACGCTTGTTTCAAGCATTGGTACCACG
CAAAATTCCTCAAGGGCTGCTTGGAAACGTCCTCTGAGTGCGAGCATAGG
TTTGAGGAACTTCAAGTGCCCTCCATTACAGTTCCGAACCAGGATCGAGT
TGCATTACCACGAATGGCGGCTGCGACACCGCAACAACCCAACTTCTTTA
AACGGAAAACGGTTGAAAAAGTGCATGTTACCCGTGATCCATCTGGGTTT
CCAGTGCTGCAAATCGACCAAGTACCCAAACGATTGATACCTTTGTGGCT
TCTTGTAATAATTGCAGTAGCTGCAAGCTGGCTTCTGCGCCGGTTTATCA
TGCTCAAGTGCTTGGCGCAGAAATACGTCCGGAAAGACCTCAAGAAGGAC
ATAGCACACTTTTACGATAGCAGATCTGCAGCATGGGAAACAGTTTGGGG
CGAGCACATGCATCACGGTCTATACGACGTTGTCGACAGCAAGCGAATGA
CAGGACAGCCTGCGCAAATACGAACCATGTCAGAACTTCTGAAACTCTGC
AATGCCATGAACTTGAATCTTCCTCCTGGTTCGAGGATACTCGATCTCGG
CTGCGGGATTGGGGGGGCATCGCGTTTTCTAGCTCGGCATTTTGGAGAAA
GTTGTCATGTCACGGGTATCACGTTGAGTCCCCAACAAGCAAACCGGGCT
AACGAATTGAACAAAGAGAAACGGCTCGAAACAAGAGTTAGAAATGAGGT
AAGAGATGCTTTGAACAGTGGTTTCCCAGACGAAGAATTCGAGATCGTAT
GGAGCCTGGAGAGTGGAGAACATATAGAGAATAAACCGCTTCTAATGAAG
GAGTGTGCGCGAATGCTCAAACCTGGTGGTCGTTTGGTTATGCTGGCCTG
GTGTGTGAGAGAGTCTACTCCATCCTTGACACTTTCAGAGAGATATTCTA
TTCGTCAGATTATGGAAGAGTACTGTTTGCCAAGAGTATCCCCGCCAAGC
GAGTATGAAACAGAGATGATTCGCGCTGGTTTTCGGAATGTTAAGGTTGA
AGATTGGACGAAAAGAGCAGCACCGTTTTGGGGGGAAGTAGTGAGAAGCG
CATTCTTTAATCCACTTGGATGGAAAATGCTATTTAAGTACAAGTGGCCG
TTGGTACGATCGGCTTTGGCTATGCGGCATGTGATATCAGGTATCCGACA
AGGGGTTTTCCGTCTGGTTGCCTTCTCCGCCACGAAGGCGAGTGAAGAGG
ATATTGAGAAGGAAAAGGCAGCAGTCGGTACATTGAAATGTCGCAATGAA
AACGATTTACCGTAG
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protein sequence of Ggra6607.t1

>Ggra6607.t1 ID=Ggra6607.t1|Name=Ggra6607.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=455bp
MASDKARKRVVNPLQHCAAEKARYDACFKHWYHAKFLKGCLETSSECEHR
FEELQVPSITVPNQDRVALPRMAAATPQQPNFFKRKTVEKVHVTRDPSGF
PVLQIDQVPKRLIPLWLLVIIAVAASWLLRRFIMLKCLAQKYVRKDLKKD
IAHFYDSRSAAWETVWGEHMHHGLYDVVDSKRMTGQPAQIRTMSELLKLC
NAMNLNLPPGSRILDLGCGIGGASRFLARHFGESCHVTGITLSPQQANRA
NELNKEKRLETRVRNEVRDALNSGFPDEEFEIVWSLESGEHIENKPLLMK
ECARMLKPGGRLVMLAWCVRESTPSLTLSERYSIRQIMEEYCLPRVSPPS
EYETEMIRAGFRNVKVEDWTKRAAPFWGEVVRSAFFNPLGWKMLFKYKWP
LVRSALAMRHVISGIRQGVFRLVAFSATKASEEDIEKEKAAVGTLKCRNE
NDLP*
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mRNA from alignment at tig00000081_pilon:546971..549822-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6607.t1 ID=Ggra6607.t1|Name=Ggra6607.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2852bp|location=Sequence derived from alignment at tig00000081_pilon:546971..549822- (Gracilaria gracilis GNS1m male)
ATGGCGTCTGACAAGGCACGCAAGCGAGTTGTGAACCCGCTGCAACACTG
CGCCGCGGAAAAGGCTCGCTACGACGCTTGTTTCAAGCATTGGTACCACG
CAAAATTCCTCAAGGTATGTTCCAACCCTGTGTCATTCCTACGCTGCCTT
TCTCACCAACGCACTCTCTGACCGCGCGCGGCGTGAAAAAAAAAAAGGGC
TGCTTGGAAACGTCCTCTGAGTGCGAGCATAGGTTTGAGGAACTTCAAGT
GTGTGTAAACGCCGCGCTGGAGCAAGCAAGACAAGCTGCGAACAAGTAGT
TGCGTTCACCACATCACTGCACTTTGCATGCGCGTAACATCCATAATGCC
CACTTCGTCACTGCTGCAGCAGTCACAAATATTGAAACAGGTGCAGGTGC
TTGTCCAGCCACAATAAAAGCATTCCGTTGCGGGAAACCACCATTGGTGC
TCACATGTTTCATGTTTTGCAAAAACTGTGTGAAGCAAACTGGCAATAAC
ACCATCTCCACGCTGTATTCATTCCGTTTCACACACAAACAAATCCCTAA
CGCCATTTCAACACTCTTGGCATATATCCTTTCAAACACAACAAACATGT
GCACGGCTCGTCATGTTTCTCAAGAGAGAGAGAGAGAGAGAGATGCTTCC
ATCCCTTCCATTTGAGCAATGACTTCCACCAACGAACTGTACCAACGTAG
CTATGAATACACTACCATGTCTTGCACCAACACCAATAATTTGCATGTCT
TTACATAGAACAACATGGTTACTATGCAAACAAGCATCACATTCCAATCT
CGCAGTTGATTAGGGGGTGAGAGGAGCCCAAAATCCATAATTCATGTGAC
TCATTCCCTTCCCGTTTGTCACGCAGTGGCCAGCGATCAAACCCCTTCCT
GAAAACAATCGTTCGCAACATCCGAGCTGGGAAAACACTCGTCGAGTCGT
CTGATTTGTCTCACAACCATCGCGTTCTGCTTCTCTTCCAAACTGCCCGT
CTATAGTTAACAACACTTGCCAATATTCAAACATTGACTGACCGACCTTC
AAACAATTGTGATCAGATACTGATCTGGAGCTTCATCGCGATTGTCCTGA
AAAAGGAGCTATTTAGTCTGCACTCCGTTTCTGGAAATGCGCCGTGCCCT
GGTCTCATGTTCTCATTGTGCTTCCCAAACTTCCACCGCGCATATTATAT
AACCTTCTACCAAGGGTACCACCGATATCCTAGAGCCTACCGCCGCCTGA
ACATCACTGACACAAGCGTCATTTTACCCTTCTAGGTAAGCTAGTACCTT
CGTAACTTTGCACTGCGCCTATCGAATCCCTCCCCTGTTTTTGGCTCCTC
CATACAGCAAACAGGCTTGTATGACCCATCCCGATCAAACACAAAAGTAG
ATCCAACACTTAAGTATCGGCTGTCTTGCACAACACCCTCCGCGCCACAC
AATTCGCAAAGTAATGCGCTTTTGATACATTGAGCCCAAAGTTGAAACGT
TCACAAGTCATCATTCAAGCATCTGTATATTTCCTGTGAACCTCGCGAAG
CCTCTCTGTCTCCAAATGGCTTGCTTCATTTCTTCACCACCAATCTTTAC
CTCTAGCTTTTCTGCTTCGAAGCTACTCGTTAGTTCACAAAAATTCCCTG
GCAGGCCCTCCATTACAGTTCCGAACCAGGATCGAGTTGCATTACCACGA
ATGGCGGCTGCGACACCGCAACAACCCAACTTCTTTAAACGGAAAACGGT
TGAAAAAGTGCATGTTACCCGTGATCCATCTGGGTTTCCAGTGCTGCAAA
TCGACCAAGTACCCAAACGATTGATACCTTTGTGGCTTCTTGTAATAATT
GCAGTAGCTGCAAGCTGGCTTCTGCGCCGGTTTATCATGCTCAAGTGCTT
GGCGCAGAAATACGTCCGGAAAGACCTCAAGAAGGACATAGCACACTTTT
ACGATAGCAGATCTGCAGCATGGGAAACAGTTTGGGGCGAGCACATGCAT
CACGGTCTATACGACGTTGTCGACAGCAAGCGAATGACAGGACAGCCTGC
GCAAATACGAACCATGTCAGAACTTCTGAAACTCTGCAATGCCATGAACT
TGAATCTTCCTCCTGGTTCGAGGATACTCGATCTCGGCTGCGGGATTGGG
GGGGCATCGCGTTTTCTAGCTCGGCATTTTGGAGAAAGTTGTCATGTCAC
GGGTATCACGTTGAGTCCCCAACAAGCAAACCGGGCTAACGAATTGAACA
AAGAGAAACGGCTCGAAACAAGAGTTAGAAATGAGGTAAGAGATGCTTTG
AACAGTGGTTTCCCAGACGAAGAATTCGAGATCGTATGGAGCCTGGAGAG
TGGAGAACATATAGAGAATAAACCGCTTCTAATGAAGGAGTGTGCGCGAA
TGCTCAAACCTGGTGGTCGTTTGGTTATGCTGGCCTGGTGTGTGAGAGAG
TCTACTCCATCCTTGACACTTTCAGAGAGATATTCTATTCGTCAGATTAT
GGAAGAGTACTGTTTGCCAAGAGTATCCCCGCCAAGCGAGTATGAAACAG
AGATGATTCGCGCTGGTTTTCGGAATGTTAAGGTTGAAGATTGGACGAAA
AGAGCAGCACCGTTTTGGGGGGAAGTAGTGAGAAGCGCATTCTTTAATCC
ACTTGGATGGAAAATGCTATTTAAGTACAAGTGGCCGTTGGTACGATCGG
CTTTGGCTATGCGGCATGTGATATCAGGTATCCGACAAGGGGTTTTCCGT
CTGGTTGCCTTCTCCGCCACGAAGGCGAGTGAAGAGGATATTGAGAAGGA
AAAGGCAGCAGTCGGTACATTGAAATGTCGCAATGAAAACGATTTACCGT
AG
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Coding sequence (CDS) from alignment at tig00000081_pilon:546971..549822-

>Ggra6607.t1 ID=Ggra6607.t1|Name=Ggra6607.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1365bp|location=Sequence derived from alignment at tig00000081_pilon:546971..549822- (Gracilaria gracilis GNS1m male)
ATGGCGTCTGACAAGGCACGCAAGCGAGTTGTGAACCCGCTGCAACACTG
CGCCGCGGAAAAGGCTCGCTACGACGCTTGTTTCAAGCATTGGTACCACG
CAAAATTCCTCAAGGGCTGCTTGGAAACGTCCTCTGAGTGCGAGCATAGG
TTTGAGGAACTTCAAGTGCCCTCCATTACAGTTCCGAACCAGGATCGAGT
TGCATTACCACGAATGGCGGCTGCGACACCGCAACAACCCAACTTCTTTA
AACGGAAAACGGTTGAAAAAGTGCATGTTACCCGTGATCCATCTGGGTTT
CCAGTGCTGCAAATCGACCAAGTACCCAAACGATTGATACCTTTGTGGCT
TCTTGTAATAATTGCAGTAGCTGCAAGCTGGCTTCTGCGCCGGTTTATCA
TGCTCAAGTGCTTGGCGCAGAAATACGTCCGGAAAGACCTCAAGAAGGAC
ATAGCACACTTTTACGATAGCAGATCTGCAGCATGGGAAACAGTTTGGGG
CGAGCACATGCATCACGGTCTATACGACGTTGTCGACAGCAAGCGAATGA
CAGGACAGCCTGCGCAAATACGAACCATGTCAGAACTTCTGAAACTCTGC
AATGCCATGAACTTGAATCTTCCTCCTGGTTCGAGGATACTCGATCTCGG
CTGCGGGATTGGGGGGGCATCGCGTTTTCTAGCTCGGCATTTTGGAGAAA
GTTGTCATGTCACGGGTATCACGTTGAGTCCCCAACAAGCAAACCGGGCT
AACGAATTGAACAAAGAGAAACGGCTCGAAACAAGAGTTAGAAATGAGGT
AAGAGATGCTTTGAACAGTGGTTTCCCAGACGAAGAATTCGAGATCGTAT
GGAGCCTGGAGAGTGGAGAACATATAGAGAATAAACCGCTTCTAATGAAG
GAGTGTGCGCGAATGCTCAAACCTGGTGGTCGTTTGGTTATGCTGGCCTG
GTGTGTGAGAGAGTCTACTCCATCCTTGACACTTTCAGAGAGATATTCTA
TTCGTCAGATTATGGAAGAGTACTGTTTGCCAAGAGTATCCCCGCCAAGC
GAGTATGAAACAGAGATGATTCGCGCTGGTTTTCGGAATGTTAAGGTTGA
AGATTGGACGAAAAGAGCAGCACCGTTTTGGGGGGAAGTAGTGAGAAGCG
CATTCTTTAATCCACTTGGATGGAAAATGCTATTTAAGTACAAGTGGCCG
TTGGTACGATCGGCTTTGGCTATGCGGCATGTGATATCAGGTATCCGACA
AGGGGTTTTCCGTCTGGTTGCCTTCTCCGCCACGAAGGCGAGTGAAGAGG
ATATTGAGAAGGAAAAGGCAGCAGTCGGTACATTGAAATGTCGCAATGAA
AACGATTTACCGTAG
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