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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 588596.U9V655 |
| Preferred name | fcp1 |
| PFAMs | BRCT,NIF,PTCB-BRCT |
| Max annot lvl | 4751|Fungi |
| KEGG ko | ko:K15732 |
| GOs | GO:0000428,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008420,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016311,GO:0016591,GO:0016787,GO:0016788,GO:0016791,GO:0019219,GO:0019222,GO:0019538,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032991,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070940,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141 |
| Evalue | 9.68e-53 |
| EggNOG OGs | COG5190@1|root,KOG0323@2759|Eukaryota,38IPM@33154|Opisthokonta,3NXKY@4751|Fungi |
| EC | 3.1.3.16 |
| Description | RNA polymerase II |
| COG category | L |
| BRITE | ko00000,ko01000,ko01009,ko03021 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra6610.t1.start1 | Ggra6610.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000081_pilon 565039..565041 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra6610.t1.stop1 | Ggra6610.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000081_pilon 567502..567504 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra6610.t1 ID=Ggra6610.t1|Name=Ggra6610.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=822bp MRGFKQENVPLPPRVLQHPQSWRLERWLVKPASWVHREQRIATFRSLQNA ALEYAHAPRSGKLVNLTLQQNAPVDSTKTPLASIEFCPHSVVFKGICAVC GETAQSLHFAETKNTIERIPVAYESEQLAVSRAEAESRSSVNARHLLESR RLSLVLDLDHTLLHATDDIRAPEFIACFPADADLQSVKAFHLGTGLNPTN SARMHVKLRPHLAHFLQRLSKKFELHIYTMGTRSYAAQIASIIDPEKKLF GGRITSREDFAEGRLNQKSIQRLFPCDDSMVLIVDDREDVWISATGQSFM PNLIRAEPYHFWDGLHEVYDRAISLFGYRNVEGKRQKVSNLPSKTLNEAS AGANQDEKEHTIKLDASKPSENGNEVKQTNGIIADFETQSKERQESALPL KADQNGVFSVKVNRPVSPDVVPNATPEDNSEHVVDMQVVGVALNGDSKAK QQNGSSPGQAKPDRLEKLEDEEGSNQTRDQQTCSSKGGTPLRNVPPNGVV VEKVETLSHNTVERKATDNVEGHHLSQQNQEPQNGSYKEESTMQPASSNR ALTGKNAFFSGIFSELVSKWWAKDVNPKVANHLPRLADVLENCHARFFSI ADQARKASGAVHNGPTKRFRPPADVKKILAGCRREVLRDCVVSFTGVIPT GVDPHNSELWNLAQRLGAQCSLDFENGHTTHLVTSEARGYYTRKYKQAVE NGSAFVVSPSWLEHSAFHFERQDEFEYRVDSDDRFKTSEEFKSWVNDNYA KAASACRKRSAAQMNDKQLGDERTPKRRKLDSPSPSVRGSGSRSPVADVG MLSVLSQDEIGAAIEAAFSAE* back to topspliced messenger RNA >Ggra6610.t1 ID=Ggra6610.t1|Name=Ggra6610.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2466bp|location=Sequence derived from alignment at tig00000081_pilon:565039..567504+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGCGTGGATTCAAACAGGAAAATGTACCACTTCCACCGCGAGTCCTCCA ACACCCTCAAAGCTGGCGCCTGGAGCGCTGGCTAGTCAAGCCAGCCAGTT GGGTGCATCGCGAGCAACGAATAGCCACCTTCAGATCCTTGCAAAACGCC GCGCTTGAATACGCACACGCCCCGCGCTCCGGAAAGTTAGTCAACCTCAC TCTTCAACAAAACGCCCCAGTAGATTCAACCAAAACCCCACTTGCCTCCA TTGAGTTCTGTCCTCACTCTGTAGTCTTCAAGGGCATTTGTGCCGTGTGC GGTGAAACCGCACAGTCTCTCCACTTTGCCGAGACTAAAAACACCATTGA GAGGATCCCGGTGGCGTATGAATCCGAGCAGCTTGCCGTGTCGAGGGCGG AGGCAGAGTCGAGGTCTTCTGTCAATGCCAGACATCTGCTCGAATCGCGT CGTCTTTCCCTTGTCCTTGACCTCGATCACACCCTTCTTCATGCCACCGA CGACATCCGAGCGCCCGAGTTCATCGCCTGTTTCCCAGCGGACGCTGACC TGCAATCCGTGAAAGCTTTTCACCTCGGTACTGGCCTGAATCCCACAAAT TCCGCCAGAATGCATGTCAAACTTCGACCGCATCTTGCTCACTTTCTGCA ACGTCTTTCGAAGAAATTTGAGCTTCACATCTATACGATGGGCACGCGTT CTTATGCTGCCCAGATTGCAAGCATTATCGATCCTGAGAAGAAGCTGTTC GGCGGTCGTATCACGAGCCGAGAGGACTTTGCTGAAGGTCGACTCAATCA GAAAAGCATACAGCGACTATTTCCGTGCGACGACTCAATGGTGCTCATTG TGGACGATAGGGAGGATGTCTGGATTTCCGCTACTGGTCAATCCTTCATG CCAAATCTTATCAGAGCCGAGCCGTATCACTTTTGGGATGGACTTCATGA AGTCTATGATCGAGCCATCAGTCTATTCGGCTATCGCAATGTGGAAGGAA AACGCCAAAAGGTTTCCAACTTACCCAGCAAGACGCTGAATGAAGCTTCC GCAGGAGCAAATCAGGATGAGAAGGAGCATACAATCAAGCTTGACGCCTC AAAGCCATCCGAGAATGGAAATGAGGTAAAGCAAACCAACGGCATAATTG CCGACTTTGAAACTCAATCCAAAGAAAGACAAGAAAGCGCTCTGCCTCTC AAAGCTGACCAGAATGGAGTCTTTTCAGTGAAAGTCAATCGGCCCGTAAG CCCTGACGTTGTGCCGAATGCCACCCCTGAGGACAATTCTGAGCACGTTG TTGACATGCAAGTTGTAGGTGTAGCTCTCAACGGAGATTCCAAAGCTAAG CAGCAAAATGGGTCATCACCCGGCCAAGCTAAGCCTGACCGTCTGGAAAA GCTAGAAGACGAAGAAGGATCCAATCAAACCCGAGACCAACAGACCTGCT CTTCGAAAGGTGGAACCCCATTACGGAATGTCCCGCCAAACGGGGTCGTA GTAGAAAAAGTGGAAACATTGTCTCATAATACTGTTGAGCGAAAGGCTAC GGATAACGTAGAAGGCCATCATCTGTCCCAACAGAACCAAGAGCCGCAAA ATGGCTCCTACAAAGAAGAGTCTACCATGCAGCCTGCCTCATCAAACAGG GCTTTGACTGGTAAAAACGCTTTCTTTTCTGGGATATTCAGTGAACTCGT CAGCAAGTGGTGGGCGAAAGACGTGAATCCTAAGGTTGCCAATCACCTAC CAAGACTGGCTGACGTCCTCGAAAATTGTCATGCAAGATTCTTCTCAATA GCAGATCAGGCTAGAAAAGCGTCTGGTGCTGTACATAACGGCCCAACCAA ACGCTTTAGACCGCCAGCAGATGTGAAGAAAATTCTAGCCGGCTGTCGAA GAGAAGTTCTTCGTGACTGTGTCGTGAGTTTTACCGGTGTTATACCAACG GGCGTCGATCCCCATAACTCTGAGCTTTGGAATCTTGCGCAACGTCTTGG GGCACAGTGTTCCTTAGACTTCGAGAACGGTCATACGACGCACTTGGTTA CGTCCGAAGCACGAGGCTATTACACTAGAAAATATAAACAAGCAGTGGAA AATGGTTCTGCTTTTGTGGTTTCGCCATCATGGCTTGAACACAGTGCTTT TCATTTTGAGAGACAAGATGAATTTGAGTACCGAGTTGACAGTGACGACA GATTTAAAACTTCCGAGGAGTTCAAGTCGTGGGTAAACGACAACTATGCG AAGGCAGCATCGGCATGTCGGAAGCGAAGTGCGGCGCAAATGAACGACAA ACAGTTAGGAGATGAACGCACGCCGAAGAGGAGGAAGCTGGATTCCCCTT CTCCCAGTGTAAGAGGAAGTGGAAGTCGGTCACCCGTTGCAGACGTCGGG ATGCTATCGGTTCTTTCTCAGGACGAAATCGGAGCGGCGATCGAGGCGGC TTTTTCGGCGGAGTAA back to topprotein sequence of Ggra6610.t1 >Ggra6610.t1 ID=Ggra6610.t1|Name=Ggra6610.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=822bp
MRGFKQENVPLPPRVLQHPQSWRLERWLVKPASWVHREQRIATFRSLQNA ALEYAHAPRSGKLVNLTLQQNAPVDSTKTPLASIEFCPHSVVFKGICAVC GETAQSLHFAETKNTIERIPVAYESEQLAVSRAEAESRSSVNARHLLESR RLSLVLDLDHTLLHATDDIRAPEFIACFPADADLQSVKAFHLGTGLNPTN SARMHVKLRPHLAHFLQRLSKKFELHIYTMGTRSYAAQIASIIDPEKKLF GGRITSREDFAEGRLNQKSIQRLFPCDDSMVLIVDDREDVWISATGQSFM PNLIRAEPYHFWDGLHEVYDRAISLFGYRNVEGKRQKVSNLPSKTLNEAS AGANQDEKEHTIKLDASKPSENGNEVKQTNGIIADFETQSKERQESALPL KADQNGVFSVKVNRPVSPDVVPNATPEDNSEHVVDMQVVGVALNGDSKAK QQNGSSPGQAKPDRLEKLEDEEGSNQTRDQQTCSSKGGTPLRNVPPNGVV VEKVETLSHNTVERKATDNVEGHHLSQQNQEPQNGSYKEESTMQPASSNR ALTGKNAFFSGIFSELVSKWWAKDVNPKVANHLPRLADVLENCHARFFSI ADQARKASGAVHNGPTKRFRPPADVKKILAGCRREVLRDCVVSFTGVIPT GVDPHNSELWNLAQRLGAQCSLDFENGHTTHLVTSEARGYYTRKYKQAVE NGSAFVVSPSWLEHSAFHFERQDEFEYRVDSDDRFKTSEEFKSWVNDNYA KAASACRKRSAAQMNDKQLGDERTPKRRKLDSPSPSVRGSGSRSPVADVG MLSVLSQDEIGAAIEAAFSAE* back to topmRNA from alignment at tig00000081_pilon:565039..567504+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra6610.t1 ID=Ggra6610.t1|Name=Ggra6610.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2466bp|location=Sequence derived from alignment at tig00000081_pilon:565039..567504+ (Gracilaria gracilis GNS1m male) ATGCGTGGATTCAAACAGGAAAATGTACCACTTCCACCGCGAGTCCTCCA
ACACCCTCAAAGCTGGCGCCTGGAGCGCTGGCTAGTCAAGCCAGCCAGTT
GGGTGCATCGCGAGCAACGAATAGCCACCTTCAGATCCTTGCAAAACGCC
GCGCTTGAATACGCACACGCCCCGCGCTCCGGAAAGTTAGTCAACCTCAC
TCTTCAACAAAACGCCCCAGTAGATTCAACCAAAACCCCACTTGCCTCCA
TTGAGTTCTGTCCTCACTCTGTAGTCTTCAAGGGCATTTGTGCCGTGTGC
GGTGAAACCGCACAGTCTCTCCACTTTGCCGAGACTAAAAACACCATTGA
GAGGATCCCGGTGGCGTATGAATCCGAGCAGCTTGCCGTGTCGAGGGCGG
AGGCAGAGTCGAGGTCTTCTGTCAATGCCAGACATCTGCTCGAATCGCGT
CGTCTTTCCCTTGTCCTTGACCTCGATCACACCCTTCTTCATGCCACCGA
CGACATCCGAGCGCCCGAGTTCATCGCCTGTTTCCCAGCGGACGCTGACC
TGCAATCCGTGAAAGCTTTTCACCTCGGTACTGGCCTGAATCCCACAAAT
TCCGCCAGAATGCATGTCAAACTTCGACCGCATCTTGCTCACTTTCTGCA
ACGTCTTTCGAAGAAATTTGAGCTTCACATCTATACGATGGGCACGCGTT
CTTATGCTGCCCAGATTGCAAGCATTATCGATCCTGAGAAGAAGCTGTTC
GGCGGTCGTATCACGAGCCGAGAGGACTTTGCTGAAGGTCGACTCAATCA
GAAAAGCATACAGCGACTATTTCCGTGCGACGACTCAATGGTGCTCATTG
TGGACGATAGGGAGGATGTCTGGATTTCCGCTACTGGTCAATCCTTCATG
CCAAATCTTATCAGAGCCGAGCCGTATCACTTTTGGGATGGACTTCATGA
AGTCTATGATCGAGCCATCAGTCTATTCGGCTATCGCAATGTGGAAGGAA
AACGCCAAAAGGTTTCCAACTTACCCAGCAAGACGCTGAATGAAGCTTCC
GCAGGAGCAAATCAGGATGAGAAGGAGCATACAATCAAGCTTGACGCCTC
AAAGCCATCCGAGAATGGAAATGAGGTAAAGCAAACCAACGGCATAATTG
CCGACTTTGAAACTCAATCCAAAGAAAGACAAGAAAGCGCTCTGCCTCTC
AAAGCTGACCAGAATGGAGTCTTTTCAGTGAAAGTCAATCGGCCCGTAAG
CCCTGACGTTGTGCCGAATGCCACCCCTGAGGACAATTCTGAGCACGTTG
TTGACATGCAAGTTGTAGGTGTAGCTCTCAACGGAGATTCCAAAGCTAAG
CAGCAAAATGGGTCATCACCCGGCCAAGCTAAGCCTGACCGTCTGGAAAA
GCTAGAAGACGAAGAAGGATCCAATCAAACCCGAGACCAACAGACCTGCT
CTTCGAAAGGTGGAACCCCATTACGGAATGTCCCGCCAAACGGGGTCGTA
GTAGAAAAAGTGGAAACATTGTCTCATAATACTGTTGAGCGAAAGGCTAC
GGATAACGTAGAAGGCCATCATCTGTCCCAACAGAACCAAGAGCCGCAAA
ATGGCTCCTACAAAGAAGAGTCTACCATGCAGCCTGCCTCATCAAACAGG
GCTTTGACTGGTAAAAACGCTTTCTTTTCTGGGATATTCAGTGAACTCGT
CAGCAAGTGGTGGGCGAAAGACGTGAATCCTAAGGTTGCCAATCACCTAC
CAAGACTGGCTGACGTCCTCGAAAATTGTCATGCAAGATTCTTCTCAATA
GCAGATCAGGCTAGAAAAGCGTCTGGTGCTGTACATAACGGCCCAACCAA
ACGCTTTAGACCGCCAGCAGATGTGAAGAAAATTCTAGCCGGCTGTCGAA
GAGAAGTTCTTCGTGACTGTGTCGTGAGTTTTACCGGTGTTATACCAACG
GGCGTCGATCCCCATAACTCTGAGCTTTGGAATCTTGCGCAACGTCTTGG
GGCACAGTGTTCCTTAGACTTCGAGAACGGTCATACGACGCACTTGGTTA
CGTCCGAAGCACGAGGCTATTACACTAGAAAATATAAACAAGCAGTGGAA
AATGGTTCTGCTTTTGTGGTTTCGCCATCATGGCTTGAACACAGTGCTTT
TCATTTTGAGAGACAAGATGAATTTGAGTACCGAGTTGACAGTGACGACA
GATTTAAAACTTCCGAGGAGTTCAAGTCGTGGGTAAACGACAACTATGCG
AAGGCAGCATCGGCATGTCGGAAGCGAAGTGCGGCGCAAATGAACGACAA
ACAGTTAGGAGATGAACGCACGCCGAAGAGGAGGAAGCTGGATTCCCCTT
CTCCCAGTGTAAGAGGAAGTGGAAGTCGGTCACCCGTTGCAGACGTCGGG
ATGCTATCGGTTCTTTCTCAGGACGAAATCGGAGCGGCGATCGAGGCGGC
TTTTTCGGCGGAGTAA back to topCoding sequence (CDS) from alignment at tig00000081_pilon:565039..567504+ >Ggra6610.t1 ID=Ggra6610.t1|Name=Ggra6610.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2466bp|location=Sequence derived from alignment at tig00000081_pilon:565039..567504+ (Gracilaria gracilis GNS1m male) ATGCGTGGATTCAAACAGGAAAATGTACCACTTCCACCGCGAGTCCTCCA ACACCCTCAAAGCTGGCGCCTGGAGCGCTGGCTAGTCAAGCCAGCCAGTT GGGTGCATCGCGAGCAACGAATAGCCACCTTCAGATCCTTGCAAAACGCC GCGCTTGAATACGCACACGCCCCGCGCTCCGGAAAGTTAGTCAACCTCAC TCTTCAACAAAACGCCCCAGTAGATTCAACCAAAACCCCACTTGCCTCCA TTGAGTTCTGTCCTCACTCTGTAGTCTTCAAGGGCATTTGTGCCGTGTGC GGTGAAACCGCACAGTCTCTCCACTTTGCCGAGACTAAAAACACCATTGA GAGGATCCCGGTGGCGTATGAATCCGAGCAGCTTGCCGTGTCGAGGGCGG AGGCAGAGTCGAGGTCTTCTGTCAATGCCAGACATCTGCTCGAATCGCGT CGTCTTTCCCTTGTCCTTGACCTCGATCACACCCTTCTTCATGCCACCGA CGACATCCGAGCGCCCGAGTTCATCGCCTGTTTCCCAGCGGACGCTGACC TGCAATCCGTGAAAGCTTTTCACCTCGGTACTGGCCTGAATCCCACAAAT TCCGCCAGAATGCATGTCAAACTTCGACCGCATCTTGCTCACTTTCTGCA ACGTCTTTCGAAGAAATTTGAGCTTCACATCTATACGATGGGCACGCGTT CTTATGCTGCCCAGATTGCAAGCATTATCGATCCTGAGAAGAAGCTGTTC GGCGGTCGTATCACGAGCCGAGAGGACTTTGCTGAAGGTCGACTCAATCA GAAAAGCATACAGCGACTATTTCCGTGCGACGACTCAATGGTGCTCATTG TGGACGATAGGGAGGATGTCTGGATTTCCGCTACTGGTCAATCCTTCATG CCAAATCTTATCAGAGCCGAGCCGTATCACTTTTGGGATGGACTTCATGA AGTCTATGATCGAGCCATCAGTCTATTCGGCTATCGCAATGTGGAAGGAA AACGCCAAAAGGTTTCCAACTTACCCAGCAAGACGCTGAATGAAGCTTCC GCAGGAGCAAATCAGGATGAGAAGGAGCATACAATCAAGCTTGACGCCTC AAAGCCATCCGAGAATGGAAATGAGGTAAAGCAAACCAACGGCATAATTG CCGACTTTGAAACTCAATCCAAAGAAAGACAAGAAAGCGCTCTGCCTCTC AAAGCTGACCAGAATGGAGTCTTTTCAGTGAAAGTCAATCGGCCCGTAAG CCCTGACGTTGTGCCGAATGCCACCCCTGAGGACAATTCTGAGCACGTTG TTGACATGCAAGTTGTAGGTGTAGCTCTCAACGGAGATTCCAAAGCTAAG CAGCAAAATGGGTCATCACCCGGCCAAGCTAAGCCTGACCGTCTGGAAAA GCTAGAAGACGAAGAAGGATCCAATCAAACCCGAGACCAACAGACCTGCT CTTCGAAAGGTGGAACCCCATTACGGAATGTCCCGCCAAACGGGGTCGTA GTAGAAAAAGTGGAAACATTGTCTCATAATACTGTTGAGCGAAAGGCTAC GGATAACGTAGAAGGCCATCATCTGTCCCAACAGAACCAAGAGCCGCAAA ATGGCTCCTACAAAGAAGAGTCTACCATGCAGCCTGCCTCATCAAACAGG GCTTTGACTGGTAAAAACGCTTTCTTTTCTGGGATATTCAGTGAACTCGT CAGCAAGTGGTGGGCGAAAGACGTGAATCCTAAGGTTGCCAATCACCTAC CAAGACTGGCTGACGTCCTCGAAAATTGTCATGCAAGATTCTTCTCAATA GCAGATCAGGCTAGAAAAGCGTCTGGTGCTGTACATAACGGCCCAACCAA ACGCTTTAGACCGCCAGCAGATGTGAAGAAAATTCTAGCCGGCTGTCGAA GAGAAGTTCTTCGTGACTGTGTCGTGAGTTTTACCGGTGTTATACCAACG GGCGTCGATCCCCATAACTCTGAGCTTTGGAATCTTGCGCAACGTCTTGG GGCACAGTGTTCCTTAGACTTCGAGAACGGTCATACGACGCACTTGGTTA CGTCCGAAGCACGAGGCTATTACACTAGAAAATATAAACAAGCAGTGGAA AATGGTTCTGCTTTTGTGGTTTCGCCATCATGGCTTGAACACAGTGCTTT TCATTTTGAGAGACAAGATGAATTTGAGTACCGAGTTGACAGTGACGACA GATTTAAAACTTCCGAGGAGTTCAAGTCGTGGGTAAACGACAACTATGCG AAGGCAGCATCGGCATGTCGGAAGCGAAGTGCGGCGCAAATGAACGACAA ACAGTTAGGAGATGAACGCACGCCGAAGAGGAGGAAGCTGGATTCCCCTT CTCCCAGTGTAAGAGGAAGTGGAAGTCGGTCACCCGTTGCAGACGTCGGG ATGCTATCGGTTCTTTCTCAGGACGAAATCGGAGCGGCGATCGAGGCGGC TTTTTCGGCGGAGTAA back to top
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