Ggra6588.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6588.t1
Unique NameGgra6588.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length148
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:406138..406633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6588Ggra6588Gracilaria gracilis GNS1m malegenetig00000081_pilon 406138..406633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6588.t1Ggra6588.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 406138..406633 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6588.t1.stop1Ggra6588.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 406138..406140 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6588.t1.CDS1Ggra6588.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 406138..406522 -
Ggra6588.t1.CDS2Ggra6588.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000081_pilon 406575..406633 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6588.t1.exon1Ggra6588.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 406138..406522 -
Ggra6588.t1.exon2Ggra6588.t1.exon2Gracilaria gracilis GNS1m maleexontig00000081_pilon 406575..406633 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6588.t1.intron1Ggra6588.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000081_pilon 406523..406574 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6588.t1.start1Ggra6588.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 406631..406633 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6588.t1 ID=Ggra6588.t1|Name=Ggra6588.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=148bp
MAETPKKKRKRVTGSATTMEPPLKSFEVKNPICVLNGSVASSVAAVPVTR
IQENWHPYYMTVLQELQSKSNDDVVEPMEIDSIKVKQETVVVDEKIDKGE
KVPAKKMLVDVRDGDAAQVVALATFAPTVVLSSHTCSAEMQRLRSTI*
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spliced messenger RNA

>Ggra6588.t1 ID=Ggra6588.t1|Name=Ggra6588.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=444bp|location=Sequence derived from alignment at tig00000081_pilon:406138..406633- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGAGACACCGAAGAAAAAGAGAAAGAGAGTTACTGGATCGGCTAC
CACGATGGAACCGCCACTAAAGAGTTTTGAGGTGAAGAATCCAATTTGCG
TGCTGAATGGAAGTGTGGCTTCATCTGTTGCTGCCGTTCCTGTTACCCGT
ATTCAAGAGAACTGGCACCCATATTATATGACAGTTCTTCAGGAATTACA
GAGTAAGAGTAATGATGATGTAGTTGAACCGATGGAAATTGACTCCATCA
AAGTCAAGCAAGAGACTGTTGTCGTCGATGAGAAGATCGATAAGGGCGAA
AAAGTTCCTGCGAAGAAAATGTTAGTGGACGTGCGAGATGGAGATGCTGC
GCAGGTTGTTGCCTTGGCAACATTCGCACCCACAGTCGTCCTCAGTAGTC
ACACGTGCTCTGCCGAGATGCAGAGGCTGCGATCGACAATATAG
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protein sequence of Ggra6588.t1

>Ggra6588.t1 ID=Ggra6588.t1|Name=Ggra6588.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=148bp
MAETPKKKRKRVTGSATTMEPPLKSFEVKNPICVLNGSVASSVAAVPVTR
IQENWHPYYMTVLQELQSKSNDDVVEPMEIDSIKVKQETVVVDEKIDKGE
KVPAKKMLVDVRDGDAAQVVALATFAPTVVLSSHTCSAEMQRLRSTI*
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mRNA from alignment at tig00000081_pilon:406138..406633-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6588.t1 ID=Ggra6588.t1|Name=Ggra6588.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=496bp|location=Sequence derived from alignment at tig00000081_pilon:406138..406633- (Gracilaria gracilis GNS1m male)
ATGGCAGAGACACCGAAGAAAAAGAGAAAGAGAGTTACTGGATCGGCTAC
CACGATGGAGTGTGTCATTTTTGTGTGGAGTGCCTTTCTGAGTACGCCTG
GATTACTGAAGACCGCCACTAAAGAGTTTTGAGGTGAAGAATCCAATTTG
CGTGCTGAATGGAAGTGTGGCTTCATCTGTTGCTGCCGTTCCTGTTACCC
GTATTCAAGAGAACTGGCACCCATATTATATGACAGTTCTTCAGGAATTA
CAGAGTAAGAGTAATGATGATGTAGTTGAACCGATGGAAATTGACTCCAT
CAAAGTCAAGCAAGAGACTGTTGTCGTCGATGAGAAGATCGATAAGGGCG
AAAAAGTTCCTGCGAAGAAAATGTTAGTGGACGTGCGAGATGGAGATGCT
GCGCAGGTTGTTGCCTTGGCAACATTCGCACCCACAGTCGTCCTCAGTAG
TCACACGTGCTCTGCCGAGATGCAGAGGCTGCGATCGACAATATAG
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Coding sequence (CDS) from alignment at tig00000081_pilon:406138..406633-

>Ggra6588.t1 ID=Ggra6588.t1|Name=Ggra6588.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=444bp|location=Sequence derived from alignment at tig00000081_pilon:406138..406633- (Gracilaria gracilis GNS1m male)
ATGGCAGAGACACCGAAGAAAAAGAGAAAGAGAGTTACTGGATCGGCTAC
CACGATGGAACCGCCACTAAAGAGTTTTGAGGTGAAGAATCCAATTTGCG
TGCTGAATGGAAGTGTGGCTTCATCTGTTGCTGCCGTTCCTGTTACCCGT
ATTCAAGAGAACTGGCACCCATATTATATGACAGTTCTTCAGGAATTACA
GAGTAAGAGTAATGATGATGTAGTTGAACCGATGGAAATTGACTCCATCA
AAGTCAAGCAAGAGACTGTTGTCGTCGATGAGAAGATCGATAAGGGCGAA
AAAGTTCCTGCGAAGAAAATGTTAGTGGACGTGCGAGATGGAGATGCTGC
GCAGGTTGTTGCCTTGGCAACATTCGCACCCACAGTCGTCCTCAGTAGTC
ACACGTGCTCTGCCGAGATGCAGAGGCTGCGATCGACAATATAG
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