Ggra6560.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra6560.t1
Unique Name	Ggra6560.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	324

Homology

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BLAST of Ggra6560.t1 vs. uniprot
Match: A0A2V3IIW0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIW0_9FLOR)

HSP 1 Score: 176 bits (446), Expect = 1.590e-50
Identity = 118/219 (53.88%), Postives = 153/219 (69.86%), Query Frame = 0

Query:  104 CNLCPLNSISDGKFCVECPSGFMRDVDVCACRGVLAQNKGLVSGVCRECPPGSYGYSLNILEAHQCVQCPAGTYRDLENDFSLTSCDPTIDGACPNPAPCKNCPPNTITREXXXXXXXXXXXXXXXXXXXXXXCLREGGLSESVSFTDPLGTMDDSSIYPEQTSTEPVPD-ETDDMPTTPEPEESQRPEMEPQISDRPTALSDESVSETREEVLESLSP 321
            C+ CP ++ SDGKFCV+C +GF+RD D CACRG LAQNKG+V G CR+CPPGSYG S ++ + + CVQ  AG++R+LEND  L +C  + + +CP   PC+ CPPNT+ REXXXXXXXXXXXXXXXXXXXXXX LREGG SE V F DP+G +DD     E++S +PVPD + +DM ++ EP ES  P+   +I       S+E  S +  E + S  P
Sbjct:    2 CSTCPNDAASDGKFCVKCGNGFVRDGDECACRGALAQNKGIVDGFCRQCPPGSYGKSGDVFQQNTCVQXXAGSFRNLENDILLAACAMSGEASCPKAVPCQTCPPNTVAREXXXXXXXXXXXXXXXXXXXXXXXLREGGASEPVLFNDPIGLVDDQFDEVEESS-QPVPDLDENDMTSSTEPVESPLPQSIVEIEKSLPDFSEELPSASDPEQMMSTEP 219

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BLAST of Ggra6560.t1 vs. uniprot
Match: A0A2V3IT56 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT56_9FLOR)

HSP 1 Score: 78.2 bits (191), Expect = 1.060e-12
Identity = 82/219 (37.44%), Postives = 103/219 (47.03%), Query Frame = 0

Query:   36 KCVVPQTTCPIGTNLILRTGEVQEENDAKRTALCLSQDCDSPPTNVTLVESRTCGRCKRNQSLDAKMSCNLCPLNSISDGKFCVECPSGFMRDVD-VCACRGVLAQNKGLVSGVCRECPPGSYGYSLNILEAHQCVQCPAGTYRDLENDFSLTSCDPTIDGACPNPAPCKNCPPNTITREXXXXXXXXXXXXXXXXXXXXXXCLREGGLSESVSFTDPL 253
            KC  P T CP G  L +         DA    LC+   C     ++T  +   C  C  +                    + C  CP   +R++D  C+C G  AQN G++ G C ECP GSYG      + + CVQ   GTYR++     L +  P     C +  PC  CP  +ITR  XXXXXXXXXXXXXXXXXXXX CLR G  +  V F D L
Sbjct:  128 KCFNPITGCPPGEYLNV---------DATGYTLCVRDGC-----SITEEDGLICPPCTGSYY-------------DTYSFEGCDPCPGKQVRNLDYTCSCSGPFAQNLGIIDGSCSECPVGSYGKRTATRKENICVQXXXGTYREVRTAEELMALCPR----CGSAKPCLKCPAGSITRRGXXXXXXXXXXXXXXXXXXXXECLRFGAPTAPVKFNDAL 315

The following BLAST results are available for this feature:

BLAST of Ggra6560.t1 vs. uniprot

BLAST of Ggra6560.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IIW0	1.590e-50	53.88	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
A0A2V3IT56	1.060e-12	37.44	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM01411	GCC2_GCC3_2	coord: 143..189 e-value: 0.055 score: 22.6 coord: 195..237 e-value: 0.25 score: 20.4 coord: 90..134 e-value: 30.0 score: 3.7 coord: 2..44 e-value: 2.8 score: 12.9
None	No IPR available	GENE3D	2.10.50.10	Tumor Necrosis Factor Receptor, subunit A, domain 2	coord: 152..237 e-value: 2.9E-8 score: 35.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 248..274
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 248..323
IPR011641	Tyrosine-protein kinase ephrin type A/B receptor-like	PFAM	PF07699	Ephrin_rec_like	coord: 2..31 e-value: 1.6E-5 score: 24.6
IPR009030	Growth factor receptor cysteine-rich domain superfamily	SUPERFAMILY	57184	Growth factor receptor domain	coord: 2..125
IPR009030	Growth factor receptor cysteine-rich domain superfamily	SUPERFAMILY	57184	Growth factor receptor domain	coord: 104..234

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000081_pilon	contig	tig00000081_pilon:269386..270357 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6560.t1	Ggra6560.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000081_pilon 269386..270357 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra6560.t1 ID=Ggra6560.t1|Name=Ggra6560.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=324bp
MNKCTLCPAGSVQPNVMAKNCIPCPSGTVPDEDRVKCVVPQTTCPIGTNL
ILRTGEVQEENDAKRTALCLSQDCDSPPTNVTLVESRTCGRCKRNQSLDA
KMSCNLCPLNSISDGKFCVECPSGFMRDVDVCACRGVLAQNKGLVSGVCR
ECPPGSYGYSLNILEAHQCVQCPAGTYRDLENDFSLTSCDPTIDGACPNP
APCKNCPPNTITREPGSTRCEPCPQGTFSYGLGETECLREGGLSESVSFT
DPLGTMDDSSIYPEQTSTEPVPDETDDMPTTPEPEESQRPEMEPQISDRP
TALSDESVSETREEVLESLSPFE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011641	Tyr-kin_ephrin_A/B_rcpt-like
IPR009030	Growth_fac_rcpt_cys_sf