Ggra6560.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6560.t1
Unique NameGgra6560.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length324
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:269386..270357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6560Ggra6560Gracilaria gracilis GNS1m malegenetig00000081_pilon 269386..270357 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6560.t1.start1Ggra6560.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 269386..269388 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6560.t1.CDS1Ggra6560.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 269386..270357 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6560.t1.exon1Ggra6560.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 269386..270357 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6560.t1.stop1Ggra6560.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 270355..270357 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6560.t1Ggra6560.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 269386..270357 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6560.t1 ID=Ggra6560.t1|Name=Ggra6560.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=324bp
MNKCTLCPAGSVQPNVMAKNCIPCPSGTVPDEDRVKCVVPQTTCPIGTNL
ILRTGEVQEENDAKRTALCLSQDCDSPPTNVTLVESRTCGRCKRNQSLDA
KMSCNLCPLNSISDGKFCVECPSGFMRDVDVCACRGVLAQNKGLVSGVCR
ECPPGSYGYSLNILEAHQCVQCPAGTYRDLENDFSLTSCDPTIDGACPNP
APCKNCPPNTITREPGSTRCEPCPQGTFSYGLGETECLREGGLSESVSFT
DPLGTMDDSSIYPEQTSTEPVPDETDDMPTTPEPEESQRPEMEPQISDRP
TALSDESVSETREEVLESLSPFE*
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spliced messenger RNA

>Ggra6560.t1 ID=Ggra6560.t1|Name=Ggra6560.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=972bp|location=Sequence derived from alignment at tig00000081_pilon:269386..270357+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAAATGCACCTTATGTCCAGCCGGAAGTGTTCAACCCAACGTGAT
GGCCAAGAATTGTATTCCTTGTCCCAGTGGAACCGTTCCGGACGAAGACC
GAGTCAAATGCGTTGTTCCACAAACAACTTGCCCCATTGGTACAAATTTG
ATTTTGAGAACTGGTGAAGTACAAGAAGAAAACGATGCTAAGAGAACCGC
ACTTTGCCTGTCTCAGGATTGTGATTCACCCCCGACAAATGTCACGTTAG
TAGAATCTCGAACTTGCGGGCGATGCAAAAGAAACCAATCTCTGGATGCG
AAGATGTCCTGCAACCTATGTCCACTGAATTCTATCAGCGATGGAAAGTT
CTGCGTGGAATGCCCATCTGGATTCATGCGAGACGTGGATGTCTGTGCTT
GTCGCGGAGTCCTAGCACAGAATAAGGGTCTCGTGAGCGGAGTTTGTCGA
GAGTGTCCGCCAGGAAGTTACGGCTATAGTCTTAATATTCTTGAAGCTCA
TCAATGTGTGCAATGTCCGGCAGGAACATACCGTGATCTGGAGAACGATT
TCAGTCTTACTTCCTGTGACCCGACAATCGATGGCGCGTGTCCAAACCCT
GCACCGTGCAAAAACTGCCCTCCCAACACAATAACCCGAGAACCAGGATC
TACACGATGTGAACCATGTCCACAAGGGACCTTCTCCTATGGCCTAGGAG
AAACTGAATGCTTGAGAGAAGGGGGATTATCCGAGTCAGTGTCTTTCACT
GATCCTCTTGGTACGATGGATGACTCTTCTATTTATCCTGAACAGACATC
AACAGAACCGGTTCCGGATGAAACGGATGACATGCCGACAACCCCAGAAC
CGGAAGAATCTCAAAGACCCGAAATGGAACCACAAATCTCAGATAGACCC
ACGGCCTTGTCCGACGAGTCTGTGTCTGAAACCAGAGAAGAAGTATTAGA
AAGTCTTTCCCCTTTCGAATGA
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protein sequence of Ggra6560.t1

>Ggra6560.t1 ID=Ggra6560.t1|Name=Ggra6560.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=324bp
MNKCTLCPAGSVQPNVMAKNCIPCPSGTVPDEDRVKCVVPQTTCPIGTNL
ILRTGEVQEENDAKRTALCLSQDCDSPPTNVTLVESRTCGRCKRNQSLDA
KMSCNLCPLNSISDGKFCVECPSGFMRDVDVCACRGVLAQNKGLVSGVCR
ECPPGSYGYSLNILEAHQCVQCPAGTYRDLENDFSLTSCDPTIDGACPNP
APCKNCPPNTITREPGSTRCEPCPQGTFSYGLGETECLREGGLSESVSFT
DPLGTMDDSSIYPEQTSTEPVPDETDDMPTTPEPEESQRPEMEPQISDRP
TALSDESVSETREEVLESLSPFE*
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mRNA from alignment at tig00000081_pilon:269386..270357+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6560.t1 ID=Ggra6560.t1|Name=Ggra6560.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=972bp|location=Sequence derived from alignment at tig00000081_pilon:269386..270357+ (Gracilaria gracilis GNS1m male)
ATGAACAAATGCACCTTATGTCCAGCCGGAAGTGTTCAACCCAACGTGAT
GGCCAAGAATTGTATTCCTTGTCCCAGTGGAACCGTTCCGGACGAAGACC
GAGTCAAATGCGTTGTTCCACAAACAACTTGCCCCATTGGTACAAATTTG
ATTTTGAGAACTGGTGAAGTACAAGAAGAAAACGATGCTAAGAGAACCGC
ACTTTGCCTGTCTCAGGATTGTGATTCACCCCCGACAAATGTCACGTTAG
TAGAATCTCGAACTTGCGGGCGATGCAAAAGAAACCAATCTCTGGATGCG
AAGATGTCCTGCAACCTATGTCCACTGAATTCTATCAGCGATGGAAAGTT
CTGCGTGGAATGCCCATCTGGATTCATGCGAGACGTGGATGTCTGTGCTT
GTCGCGGAGTCCTAGCACAGAATAAGGGTCTCGTGAGCGGAGTTTGTCGA
GAGTGTCCGCCAGGAAGTTACGGCTATAGTCTTAATATTCTTGAAGCTCA
TCAATGTGTGCAATGTCCGGCAGGAACATACCGTGATCTGGAGAACGATT
TCAGTCTTACTTCCTGTGACCCGACAATCGATGGCGCGTGTCCAAACCCT
GCACCGTGCAAAAACTGCCCTCCCAACACAATAACCCGAGAACCAGGATC
TACACGATGTGAACCATGTCCACAAGGGACCTTCTCCTATGGCCTAGGAG
AAACTGAATGCTTGAGAGAAGGGGGATTATCCGAGTCAGTGTCTTTCACT
GATCCTCTTGGTACGATGGATGACTCTTCTATTTATCCTGAACAGACATC
AACAGAACCGGTTCCGGATGAAACGGATGACATGCCGACAACCCCAGAAC
CGGAAGAATCTCAAAGACCCGAAATGGAACCACAAATCTCAGATAGACCC
ACGGCCTTGTCCGACGAGTCTGTGTCTGAAACCAGAGAAGAAGTATTAGA
AAGTCTTTCCCCTTTCGAATGA
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Coding sequence (CDS) from alignment at tig00000081_pilon:269386..270357+

>Ggra6560.t1 ID=Ggra6560.t1|Name=Ggra6560.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=972bp|location=Sequence derived from alignment at tig00000081_pilon:269386..270357+ (Gracilaria gracilis GNS1m male)
ATGAACAAATGCACCTTATGTCCAGCCGGAAGTGTTCAACCCAACGTGAT
GGCCAAGAATTGTATTCCTTGTCCCAGTGGAACCGTTCCGGACGAAGACC
GAGTCAAATGCGTTGTTCCACAAACAACTTGCCCCATTGGTACAAATTTG
ATTTTGAGAACTGGTGAAGTACAAGAAGAAAACGATGCTAAGAGAACCGC
ACTTTGCCTGTCTCAGGATTGTGATTCACCCCCGACAAATGTCACGTTAG
TAGAATCTCGAACTTGCGGGCGATGCAAAAGAAACCAATCTCTGGATGCG
AAGATGTCCTGCAACCTATGTCCACTGAATTCTATCAGCGATGGAAAGTT
CTGCGTGGAATGCCCATCTGGATTCATGCGAGACGTGGATGTCTGTGCTT
GTCGCGGAGTCCTAGCACAGAATAAGGGTCTCGTGAGCGGAGTTTGTCGA
GAGTGTCCGCCAGGAAGTTACGGCTATAGTCTTAATATTCTTGAAGCTCA
TCAATGTGTGCAATGTCCGGCAGGAACATACCGTGATCTGGAGAACGATT
TCAGTCTTACTTCCTGTGACCCGACAATCGATGGCGCGTGTCCAAACCCT
GCACCGTGCAAAAACTGCCCTCCCAACACAATAACCCGAGAACCAGGATC
TACACGATGTGAACCATGTCCACAAGGGACCTTCTCCTATGGCCTAGGAG
AAACTGAATGCTTGAGAGAAGGGGGATTATCCGAGTCAGTGTCTTTCACT
GATCCTCTTGGTACGATGGATGACTCTTCTATTTATCCTGAACAGACATC
AACAGAACCGGTTCCGGATGAAACGGATGACATGCCGACAACCCCAGAAC
CGGAAGAATCTCAAAGACCCGAAATGGAACCACAAATCTCAGATAGACCC
ACGGCCTTGTCCGACGAGTCTGTGTCTGAAACCAGAGAAGAAGTATTAGA
AAGTCTTTCCCCTTTCGAATGA
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