Ggra6576.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6576.t1
Unique Name	Ggra6576.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	576

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000081_pilon	contig	tig00000081_pilon:313145..314872 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6576	Ggra6576	Gracilaria gracilis GNS1m male	gene	tig00000081_pilon 313145..314872 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6576.t1.stop1	Ggra6576.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000081_pilon 313145..313147 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6576.t1.CDS1	Ggra6576.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000081_pilon 313145..314872 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6576.t1.exon1	Ggra6576.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000081_pilon 313145..314872 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6576.t1.start1	Ggra6576.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000081_pilon 314870..314872 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6576.t1	Ggra6576.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000081_pilon 313145..314872 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000081_pilon:313145..314872-
coding sequence from alignment at tig00000081_pilon:313145..314872-

mRNA sequence

>Ggra6576.t1 ID=Ggra6576.t1|Name=Ggra6576.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=576bp
MLDQELNTKDSEHLTEAALERQGIEDARESRGNERKQGDDDLADVDAQIQ
EIAKRVGITEEELKQADVIQPGAKNLHVNDPNDMDHHDLLEQQRAKVDTD
RKVILDAVGKADQVQPPPEDDARHPAQAPPEMVAPGQPVLRKLQKPQRMM
EPDMPQGVNNGKSDNSELVEELEMYKQRLHDVLKSEKTAREGEREARLET
DRVRKELTSVNTEMEKAEKLVSERNSDLERLRDSLPEIAKEAKDEERGEM
EEMRETIEEQKRAFDELFEEKQMLSRMLSDEQLKLDELQEKIQHPDLGLW
ISQRAERAAILVEGPETDAIKYYANKYMAPKVTKMKHRLQMLENRVERTV
DHLLPSKYGSVVAMLLSIALIGFPIFVTLSTVVSLTKGVSLRQYVLLGNV
FLTAFAVGLCVTGFLLRQDPLQTLYEANSGMFVLLQLGIGVAYPLFLAII
LLTVLRCRDRLDLFVFACELLFYAVIGMNYRARVWRPAMLGENIDCGPMM
YAVYTMDFLAMTALTVASARPTQLSGFGTSDVEKGRVEEDGDGSGRVSSG
SKGIGSLGSGLMQLAVGGRRDEKAE*

spliced messenger RNA

>Ggra6576.t1 ID=Ggra6576.t1|Name=Ggra6576.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1728bp|location=Sequence derived from alignment at tig00000081_pilon:313145..314872- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGACCAGGAGTTGAATACCAAAGATTCGGAACACCTTACTGAGGC
TGCCTTGGAACGACAGGGCATTGAAGATGCGCGCGAGAGCCGGGGAAACG
AAAGAAAGCAAGGTGATGACGATCTTGCGGATGTCGATGCTCAGATTCAG
GAGATTGCCAAACGGGTCGGAATCACTGAGGAGGAGCTGAAACAAGCTGA
TGTCATCCAGCCTGGTGCGAAAAATCTGCACGTCAACGATCCCAATGACA
TGGACCACCATGATTTGTTGGAGCAGCAGCGAGCAAAGGTGGATACAGAC
CGCAAGGTGATATTGGACGCTGTAGGTAAAGCGGATCAAGTACAACCTCC
CCCGGAAGATGACGCACGACATCCCGCACAGGCACCGCCTGAAATGGTTG
CTCCGGGTCAACCAGTGCTCCGAAAGCTTCAAAAGCCGCAACGCATGATG
GAACCAGATATGCCTCAAGGCGTTAACAACGGAAAATCAGACAACTCGGA
ACTCGTTGAAGAGCTGGAGATGTACAAGCAACGTCTTCACGACGTTCTGA
AAAGTGAAAAGACGGCGCGTGAGGGTGAAAGGGAAGCTAGACTTGAAACA
GACCGGGTAAGAAAGGAACTAACTTCAGTAAACACTGAAATGGAGAAAGC
GGAAAAGCTGGTCTCTGAGCGGAATTCTGATCTTGAAAGACTTCGCGACA
GTCTTCCTGAGATTGCCAAAGAAGCAAAAGATGAAGAGCGAGGTGAAATG
GAGGAGATGAGGGAGACAATCGAGGAACAGAAAAGAGCATTTGACGAACT
ATTTGAAGAGAAGCAAATGCTGTCTAGAATGCTCTCTGACGAACAACTGA
AGTTGGACGAACTTCAAGAGAAAATCCAGCACCCTGACTTGGGCTTGTGG
ATCAGTCAGCGAGCTGAGCGAGCAGCAATTCTCGTGGAGGGTCCAGAAAC
AGATGCAATCAAGTATTATGCCAATAAGTACATGGCTCCTAAAGTAACGA
AGATGAAGCACAGATTGCAGATGCTAGAAAATCGGGTAGAACGAACTGTG
GATCACCTTTTGCCCTCGAAGTATGGGAGTGTGGTGGCAATGTTGTTGTC
GATTGCACTAATTGGATTCCCAATTTTTGTAACATTATCAACGGTAGTTT
CGTTGACGAAAGGAGTGTCGTTGCGACAATATGTGCTTCTTGGAAATGTA
TTCCTGACCGCTTTTGCAGTTGGCCTGTGCGTGACTGGGTTTTTGTTGAG
ACAAGATCCGCTTCAAACGCTCTACGAAGCTAACAGTGGGATGTTTGTAT
TGCTGCAGTTGGGTATTGGGGTGGCATACCCGTTGTTTTTGGCAATTATA
CTGCTCACAGTACTGAGGTGTAGGGATAGACTGGATCTGTTTGTTTTCGC
ATGCGAGTTATTGTTTTACGCTGTGATCGGCATGAATTATCGAGCTCGAG
TGTGGAGGCCCGCTATGCTGGGTGAGAACATCGATTGCGGACCCATGATG
TATGCGGTATACACGATGGATTTCTTGGCGATGACAGCGTTAACGGTGGC
TTCGGCGCGACCCACGCAGCTGAGCGGTTTTGGTACAAGTGATGTTGAAA
AGGGGCGCGTGGAGGAAGATGGTGATGGATCTGGGAGAGTGAGTAGTGGG
TCAAAGGGAATTGGGTCACTGGGGAGTGGTTTGATGCAGCTGGCGGTTGG
GGGCAGACGGGATGAAAAGGCCGAGTAA

protein sequence of Ggra6576.t1

>Ggra6576.t1 ID=Ggra6576.t1|Name=Ggra6576.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=576bp
MLDQELNTKDSEHLTEAALERQGIEDARESRGNERKQGDDDLADVDAQIQ
EIAKRVGITEEELKQADVIQPGAKNLHVNDPNDMDHHDLLEQQRAKVDTD
RKVILDAVGKADQVQPPPEDDARHPAQAPPEMVAPGQPVLRKLQKPQRMM
EPDMPQGVNNGKSDNSELVEELEMYKQRLHDVLKSEKTAREGEREARLET
DRVRKELTSVNTEMEKAEKLVSERNSDLERLRDSLPEIAKEAKDEERGEM
EEMRETIEEQKRAFDELFEEKQMLSRMLSDEQLKLDELQEKIQHPDLGLW
ISQRAERAAILVEGPETDAIKYYANKYMAPKVTKMKHRLQMLENRVERTV
DHLLPSKYGSVVAMLLSIALIGFPIFVTLSTVVSLTKGVSLRQYVLLGNV
FLTAFAVGLCVTGFLLRQDPLQTLYEANSGMFVLLQLGIGVAYPLFLAII
LLTVLRCRDRLDLFVFACELLFYAVIGMNYRARVWRPAMLGENIDCGPMM
YAVYTMDFLAMTALTVASARPTQLSGFGTSDVEKGRVEEDGDGSGRVSSG
SKGIGSLGSGLMQLAVGGRRDEKAE*

mRNA from alignment at tig00000081_pilon:313145..314872-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6576.t1 ID=Ggra6576.t1|Name=Ggra6576.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1728bp|location=Sequence derived from alignment at tig00000081_pilon:313145..314872- (Gracilaria gracilis GNS1m male)
ATGCTCGACCAGGAGTTGAATACCAAAGATTCGGAACACCTTACTGAGGC
TGCCTTGGAACGACAGGGCATTGAAGATGCGCGCGAGAGCCGGGGAAACG
AAAGAAAGCAAGGTGATGACGATCTTGCGGATGTCGATGCTCAGATTCAG
GAGATTGCCAAACGGGTCGGAATCACTGAGGAGGAGCTGAAACAAGCTGA
TGTCATCCAGCCTGGTGCGAAAAATCTGCACGTCAACGATCCCAATGACA
TGGACCACCATGATTTGTTGGAGCAGCAGCGAGCAAAGGTGGATACAGAC
CGCAAGGTGATATTGGACGCTGTAGGTAAAGCGGATCAAGTACAACCTCC
CCCGGAAGATGACGCACGACATCCCGCACAGGCACCGCCTGAAATGGTTG
CTCCGGGTCAACCAGTGCTCCGAAAGCTTCAAAAGCCGCAACGCATGATG
GAACCAGATATGCCTCAAGGCGTTAACAACGGAAAATCAGACAACTCGGA
ACTCGTTGAAGAGCTGGAGATGTACAAGCAACGTCTTCACGACGTTCTGA
AAAGTGAAAAGACGGCGCGTGAGGGTGAAAGGGAAGCTAGACTTGAAACA
GACCGGGTAAGAAAGGAACTAACTTCAGTAAACACTGAAATGGAGAAAGC
GGAAAAGCTGGTCTCTGAGCGGAATTCTGATCTTGAAAGACTTCGCGACA
GTCTTCCTGAGATTGCCAAAGAAGCAAAAGATGAAGAGCGAGGTGAAATG
GAGGAGATGAGGGAGACAATCGAGGAACAGAAAAGAGCATTTGACGAACT
ATTTGAAGAGAAGCAAATGCTGTCTAGAATGCTCTCTGACGAACAACTGA
AGTTGGACGAACTTCAAGAGAAAATCCAGCACCCTGACTTGGGCTTGTGG
ATCAGTCAGCGAGCTGAGCGAGCAGCAATTCTCGTGGAGGGTCCAGAAAC
AGATGCAATCAAGTATTATGCCAATAAGTACATGGCTCCTAAAGTAACGA
AGATGAAGCACAGATTGCAGATGCTAGAAAATCGGGTAGAACGAACTGTG
GATCACCTTTTGCCCTCGAAGTATGGGAGTGTGGTGGCAATGTTGTTGTC
GATTGCACTAATTGGATTCCCAATTTTTGTAACATTATCAACGGTAGTTT
CGTTGACGAAAGGAGTGTCGTTGCGACAATATGTGCTTCTTGGAAATGTA
TTCCTGACCGCTTTTGCAGTTGGCCTGTGCGTGACTGGGTTTTTGTTGAG
ACAAGATCCGCTTCAAACGCTCTACGAAGCTAACAGTGGGATGTTTGTAT
TGCTGCAGTTGGGTATTGGGGTGGCATACCCGTTGTTTTTGGCAATTATA
CTGCTCACAGTACTGAGGTGTAGGGATAGACTGGATCTGTTTGTTTTCGC
ATGCGAGTTATTGTTTTACGCTGTGATCGGCATGAATTATCGAGCTCGAG
TGTGGAGGCCCGCTATGCTGGGTGAGAACATCGATTGCGGACCCATGATG
TATGCGGTATACACGATGGATTTCTTGGCGATGACAGCGTTAACGGTGGC
TTCGGCGCGACCCACGCAGCTGAGCGGTTTTGGTACAAGTGATGTTGAAA
AGGGGCGCGTGGAGGAAGATGGTGATGGATCTGGGAGAGTGAGTAGTGGG
TCAAAGGGAATTGGGTCACTGGGGAGTGGTTTGATGCAGCTGGCGGTTGG
GGGCAGACGGGATGAAAAGGCCGAGTAA

Coding sequence (CDS) from alignment at tig00000081_pilon:313145..314872-

>Ggra6576.t1 ID=Ggra6576.t1|Name=Ggra6576.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1728bp|location=Sequence derived from alignment at tig00000081_pilon:313145..314872- (Gracilaria gracilis GNS1m male)
ATGCTCGACCAGGAGTTGAATACCAAAGATTCGGAACACCTTACTGAGGC
TGCCTTGGAACGACAGGGCATTGAAGATGCGCGCGAGAGCCGGGGAAACG
AAAGAAAGCAAGGTGATGACGATCTTGCGGATGTCGATGCTCAGATTCAG
GAGATTGCCAAACGGGTCGGAATCACTGAGGAGGAGCTGAAACAAGCTGA
TGTCATCCAGCCTGGTGCGAAAAATCTGCACGTCAACGATCCCAATGACA
TGGACCACCATGATTTGTTGGAGCAGCAGCGAGCAAAGGTGGATACAGAC
CGCAAGGTGATATTGGACGCTGTAGGTAAAGCGGATCAAGTACAACCTCC
CCCGGAAGATGACGCACGACATCCCGCACAGGCACCGCCTGAAATGGTTG
CTCCGGGTCAACCAGTGCTCCGAAAGCTTCAAAAGCCGCAACGCATGATG
GAACCAGATATGCCTCAAGGCGTTAACAACGGAAAATCAGACAACTCGGA
ACTCGTTGAAGAGCTGGAGATGTACAAGCAACGTCTTCACGACGTTCTGA
AAAGTGAAAAGACGGCGCGTGAGGGTGAAAGGGAAGCTAGACTTGAAACA
GACCGGGTAAGAAAGGAACTAACTTCAGTAAACACTGAAATGGAGAAAGC
GGAAAAGCTGGTCTCTGAGCGGAATTCTGATCTTGAAAGACTTCGCGACA
GTCTTCCTGAGATTGCCAAAGAAGCAAAAGATGAAGAGCGAGGTGAAATG
GAGGAGATGAGGGAGACAATCGAGGAACAGAAAAGAGCATTTGACGAACT
ATTTGAAGAGAAGCAAATGCTGTCTAGAATGCTCTCTGACGAACAACTGA
AGTTGGACGAACTTCAAGAGAAAATCCAGCACCCTGACTTGGGCTTGTGG
ATCAGTCAGCGAGCTGAGCGAGCAGCAATTCTCGTGGAGGGTCCAGAAAC
AGATGCAATCAAGTATTATGCCAATAAGTACATGGCTCCTAAAGTAACGA
AGATGAAGCACAGATTGCAGATGCTAGAAAATCGGGTAGAACGAACTGTG
GATCACCTTTTGCCCTCGAAGTATGGGAGTGTGGTGGCAATGTTGTTGTC
GATTGCACTAATTGGATTCCCAATTTTTGTAACATTATCAACGGTAGTTT
CGTTGACGAAAGGAGTGTCGTTGCGACAATATGTGCTTCTTGGAAATGTA
TTCCTGACCGCTTTTGCAGTTGGCCTGTGCGTGACTGGGTTTTTGTTGAG
ACAAGATCCGCTTCAAACGCTCTACGAAGCTAACAGTGGGATGTTTGTAT
TGCTGCAGTTGGGTATTGGGGTGGCATACCCGTTGTTTTTGGCAATTATA
CTGCTCACAGTACTGAGGTGTAGGGATAGACTGGATCTGTTTGTTTTCGC
ATGCGAGTTATTGTTTTACGCTGTGATCGGCATGAATTATCGAGCTCGAG
TGTGGAGGCCCGCTATGCTGGGTGAGAACATCGATTGCGGACCCATGATG
TATGCGGTATACACGATGGATTTCTTGGCGATGACAGCGTTAACGGTGGC
TTCGGCGCGACCCACGCAGCTGAGCGGTTTTGGTACAAGTGATGTTGAAA
AGGGGCGCGTGGAGGAAGATGGTGATGGATCTGGGAGAGTGAGTAGTGGG
TCAAAGGGAATTGGGTCACTGGGGAGTGGTTTGATGCAGCTGGCGGTTGG
GGGCAGACGGGATGAAAAGGCCGAGTAA