Ggra6585.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6585.t1
Unique NameGgra6585.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length304
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:347072..347983 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702925.1
Preferred nameTIF35
PFAMsRRM_1,eIF3g
Max annot lvl2759|Eukaryota
KEGG koko:K03248,ko:K09594,ko:K20304
KEGG Pathwayko03013,ko04150,ko05211,map03013,map04150,map05211
GOsGO:0001732,GO:0002181,GO:0002183,GO:0002188,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006415,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0016032,GO:0016043,GO:0016282,GO:0019080,GO:0019081,GO:0019538,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0032984,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043614,GO:0043624,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0051704,GO:0065003,GO:0070993,GO:0071540,GO:0071541,GO:0071704,GO:0071826,GO:0071840,GO:0075525,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue5.54e-85
EggNOG OGsKOG0122@1|root,KOG0122@2759|Eukaryota
Descriptiontranslation initiation factor activity
COG categoryJ
BRITEko00000,ko00001,ko03012,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6585Ggra6585Gracilaria gracilis GNS1m malegenetig00000081_pilon 347072..347983 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6585.t1.stop1Ggra6585.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 347072..347074 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6585.t1.CDS1Ggra6585.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 347072..347983 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6585.t1.exon1Ggra6585.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 347072..347983 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6585.t1.start1Ggra6585.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 347981..347983 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6585.t1Ggra6585.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 347072..347983 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6585.t1 ID=Ggra6585.t1|Name=Ggra6585.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=304bp
MVTEISEGANADWGDDTDFPSSGGIPPQEVVQNADGTKTVTDYGMSEDGY
LSKTVSVIKVEKVTKTVSKAVAARKNWKKFGDCEGKPPGLERGISTVSMD
EINMEWISNEQNEDEEEEEINFAKKAQQDIQTQLKMLRFKKRQEERKLGV
ANWAQMMSMQAAAKTPNETPALGLRSIDSSAGAPGKYVPPSKRSGATASV
GDSMYSRDDSATVRISNVSRSTEEADLEDLCKRFGPIRRIYLSRDRETGE
SKGFAFVAFVNISDAARCIEKLNGFGYDHLILSVEWSKPKEPRDGESRSG
FGR*
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spliced messenger RNA

>Ggra6585.t1 ID=Ggra6585.t1|Name=Ggra6585.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00000081_pilon:347072..347983- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGACCGAAATATCCGAGGGCGCAAATGCTGACTGGGGAGATGATAC
CGATTTCCCCTCCAGTGGCGGCATTCCTCCGCAGGAAGTCGTTCAGAACG
CTGATGGAACAAAAACTGTTACTGATTACGGCATGAGCGAGGATGGTTAT
CTTTCCAAGACTGTCTCCGTTATAAAAGTAGAAAAAGTGACAAAGACTGT
TTCGAAAGCAGTAGCCGCGCGAAAGAATTGGAAGAAATTCGGCGACTGTG
AAGGAAAGCCGCCAGGTTTGGAGAGAGGTATATCAACCGTTTCGATGGAT
GAAATCAACATGGAATGGATCTCAAACGAGCAAAATGAAGACGAAGAAGA
AGAAGAGATCAACTTTGCCAAGAAAGCGCAACAGGATATTCAGACTCAAC
TCAAGATGCTTCGCTTCAAGAAACGCCAGGAGGAAAGAAAGCTGGGTGTG
GCAAATTGGGCGCAGATGATGTCCATGCAAGCAGCGGCGAAAACACCTAA
CGAAACCCCAGCCCTGGGTCTGCGCTCAATCGACTCATCAGCAGGAGCCC
CAGGAAAGTACGTTCCACCTTCAAAACGCAGCGGGGCTACTGCGTCTGTT
GGAGACAGCATGTACTCGAGAGATGATTCTGCCACGGTTAGAATCAGTAA
CGTCAGTAGAAGCACCGAGGAAGCAGATCTTGAAGATCTTTGCAAGCGTT
TTGGTCCTATTCGACGTATCTACCTCAGCAGAGATCGGGAAACAGGTGAA
AGCAAAGGTTTCGCGTTTGTCGCTTTCGTTAATATATCTGATGCAGCCCG
CTGCATCGAAAAACTGAATGGCTTTGGATATGATCATCTGATTCTTTCTG
TAGAGTGGTCGAAGCCGAAGGAACCACGAGATGGAGAGTCCCGATCTGGT
TTCGGGCGTTAA
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protein sequence of Ggra6585.t1

>Ggra6585.t1 ID=Ggra6585.t1|Name=Ggra6585.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=304bp
MVTEISEGANADWGDDTDFPSSGGIPPQEVVQNADGTKTVTDYGMSEDGY
LSKTVSVIKVEKVTKTVSKAVAARKNWKKFGDCEGKPPGLERGISTVSMD
EINMEWISNEQNEDEEEEEINFAKKAQQDIQTQLKMLRFKKRQEERKLGV
ANWAQMMSMQAAAKTPNETPALGLRSIDSSAGAPGKYVPPSKRSGATASV
GDSMYSRDDSATVRISNVSRSTEEADLEDLCKRFGPIRRIYLSRDRETGE
SKGFAFVAFVNISDAARCIEKLNGFGYDHLILSVEWSKPKEPRDGESRSG
FGR*
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mRNA from alignment at tig00000081_pilon:347072..347983-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6585.t1 ID=Ggra6585.t1|Name=Ggra6585.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00000081_pilon:347072..347983- (Gracilaria gracilis GNS1m male)
ATGGTGACCGAAATATCCGAGGGCGCAAATGCTGACTGGGGAGATGATAC
CGATTTCCCCTCCAGTGGCGGCATTCCTCCGCAGGAAGTCGTTCAGAACG
CTGATGGAACAAAAACTGTTACTGATTACGGCATGAGCGAGGATGGTTAT
CTTTCCAAGACTGTCTCCGTTATAAAAGTAGAAAAAGTGACAAAGACTGT
TTCGAAAGCAGTAGCCGCGCGAAAGAATTGGAAGAAATTCGGCGACTGTG
AAGGAAAGCCGCCAGGTTTGGAGAGAGGTATATCAACCGTTTCGATGGAT
GAAATCAACATGGAATGGATCTCAAACGAGCAAAATGAAGACGAAGAAGA
AGAAGAGATCAACTTTGCCAAGAAAGCGCAACAGGATATTCAGACTCAAC
TCAAGATGCTTCGCTTCAAGAAACGCCAGGAGGAAAGAAAGCTGGGTGTG
GCAAATTGGGCGCAGATGATGTCCATGCAAGCAGCGGCGAAAACACCTAA
CGAAACCCCAGCCCTGGGTCTGCGCTCAATCGACTCATCAGCAGGAGCCC
CAGGAAAGTACGTTCCACCTTCAAAACGCAGCGGGGCTACTGCGTCTGTT
GGAGACAGCATGTACTCGAGAGATGATTCTGCCACGGTTAGAATCAGTAA
CGTCAGTAGAAGCACCGAGGAAGCAGATCTTGAAGATCTTTGCAAGCGTT
TTGGTCCTATTCGACGTATCTACCTCAGCAGAGATCGGGAAACAGGTGAA
AGCAAAGGTTTCGCGTTTGTCGCTTTCGTTAATATATCTGATGCAGCCCG
CTGCATCGAAAAACTGAATGGCTTTGGATATGATCATCTGATTCTTTCTG
TAGAGTGGTCGAAGCCGAAGGAACCACGAGATGGAGAGTCCCGATCTGGT
TTCGGGCGTTAA
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Coding sequence (CDS) from alignment at tig00000081_pilon:347072..347983-

>Ggra6585.t1 ID=Ggra6585.t1|Name=Ggra6585.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=912bp|location=Sequence derived from alignment at tig00000081_pilon:347072..347983- (Gracilaria gracilis GNS1m male)
ATGGTGACCGAAATATCCGAGGGCGCAAATGCTGACTGGGGAGATGATAC
CGATTTCCCCTCCAGTGGCGGCATTCCTCCGCAGGAAGTCGTTCAGAACG
CTGATGGAACAAAAACTGTTACTGATTACGGCATGAGCGAGGATGGTTAT
CTTTCCAAGACTGTCTCCGTTATAAAAGTAGAAAAAGTGACAAAGACTGT
TTCGAAAGCAGTAGCCGCGCGAAAGAATTGGAAGAAATTCGGCGACTGTG
AAGGAAAGCCGCCAGGTTTGGAGAGAGGTATATCAACCGTTTCGATGGAT
GAAATCAACATGGAATGGATCTCAAACGAGCAAAATGAAGACGAAGAAGA
AGAAGAGATCAACTTTGCCAAGAAAGCGCAACAGGATATTCAGACTCAAC
TCAAGATGCTTCGCTTCAAGAAACGCCAGGAGGAAAGAAAGCTGGGTGTG
GCAAATTGGGCGCAGATGATGTCCATGCAAGCAGCGGCGAAAACACCTAA
CGAAACCCCAGCCCTGGGTCTGCGCTCAATCGACTCATCAGCAGGAGCCC
CAGGAAAGTACGTTCCACCTTCAAAACGCAGCGGGGCTACTGCGTCTGTT
GGAGACAGCATGTACTCGAGAGATGATTCTGCCACGGTTAGAATCAGTAA
CGTCAGTAGAAGCACCGAGGAAGCAGATCTTGAAGATCTTTGCAAGCGTT
TTGGTCCTATTCGACGTATCTACCTCAGCAGAGATCGGGAAACAGGTGAA
AGCAAAGGTTTCGCGTTTGTCGCTTTCGTTAATATATCTGATGCAGCCCG
CTGCATCGAAAAACTGAATGGCTTTGGATATGATCATCTGATTCTTTCTG
TAGAGTGGTCGAAGCCGAAGGAACCACGAGATGGAGAGTCCCGATCTGGT
TTCGGGCGTTAA
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