Ggra2861.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2861.t1
Unique NameGgra2861.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length161
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000077_piloncontigtig00000077_pilon:144142..144624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_11857T0
PFAMszf-MYND
Max annot lvl2759|Eukaryota
Evalue1.91e-15
EggNOG OGs2A8AQ@1|root,2RYG3@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2861Ggra2861Gracilaria gracilis GNS1m malegenetig00000077_pilon 144142..144624 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2861.t1.stop1Ggra2861.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000077_pilon 144142..144144 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2861.t1.CDS1Ggra2861.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000077_pilon 144142..144624 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2861.t1.exon1Ggra2861.t1.exon1Gracilaria gracilis GNS1m maleexontig00000077_pilon 144142..144624 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2861.t1.start1Ggra2861.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000077_pilon 144622..144624 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2861.t1Ggra2861.t1Gracilaria gracilis GNS1m malepolypeptidetig00000077_pilon 144142..144624 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2861.t1 ID=Ggra2861.t1|Name=Ggra2861.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=161bp
MCAKHPEPASLNATLNACGRCLIVRYCSVNCQRRDYPSQKVQCKQLSALQ
RHLRLHSAFEQYYGHVFEVAGGREYCRKLEEGGHELQKIAESYNVAPFLY
KSLTNRLEPMRLDADDNLGMREPVPFKMLPMHRDDRCVAFIGHWLRRMNG
RLNPIAQHEA*
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spliced messenger RNA

>Ggra2861.t1 ID=Ggra2861.t1|Name=Ggra2861.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=483bp|location=Sequence derived from alignment at tig00000077_pilon:144142..144624- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGCCAAACACCCTGAACCCGCTTCTCTCAACGCCACCCTAAACGC
GTGCGGCCGCTGCCTCATCGTGCGCTACTGCAGCGTCAACTGTCAGCGCA
GAGACTATCCGTCACAGAAAGTGCAGTGCAAGCAGCTGAGCGCGCTTCAA
CGCCACCTTCGTCTACACAGCGCGTTTGAGCAGTACTACGGCCATGTGTT
CGAGGTGGCGGGAGGCCGAGAGTATTGTCGTAAGCTCGAAGAGGGTGGAC
ATGAGCTGCAAAAGATAGCCGAGAGCTACAACGTGGCTCCATTTCTGTAC
AAGTCGTTGACGAATCGGCTCGAGCCCATGAGGTTAGATGCTGATGATAA
CCTTGGTATGCGGGAGCCGGTGCCTTTCAAAATGCTACCTATGCATCGTG
ACGACCGCTGCGTGGCGTTCATTGGCCATTGGCTTCGTCGCATGAATGGC
CGTCTCAACCCTATCGCACAACACGAGGCCTGA
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protein sequence of Ggra2861.t1

>Ggra2861.t1 ID=Ggra2861.t1|Name=Ggra2861.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=161bp
MCAKHPEPASLNATLNACGRCLIVRYCSVNCQRRDYPSQKVQCKQLSALQ
RHLRLHSAFEQYYGHVFEVAGGREYCRKLEEGGHELQKIAESYNVAPFLY
KSLTNRLEPMRLDADDNLGMREPVPFKMLPMHRDDRCVAFIGHWLRRMNG
RLNPIAQHEA*
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mRNA from alignment at tig00000077_pilon:144142..144624-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2861.t1 ID=Ggra2861.t1|Name=Ggra2861.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=483bp|location=Sequence derived from alignment at tig00000077_pilon:144142..144624- (Gracilaria gracilis GNS1m male)
ATGTGCGCCAAACACCCTGAACCCGCTTCTCTCAACGCCACCCTAAACGC
GTGCGGCCGCTGCCTCATCGTGCGCTACTGCAGCGTCAACTGTCAGCGCA
GAGACTATCCGTCACAGAAAGTGCAGTGCAAGCAGCTGAGCGCGCTTCAA
CGCCACCTTCGTCTACACAGCGCGTTTGAGCAGTACTACGGCCATGTGTT
CGAGGTGGCGGGAGGCCGAGAGTATTGTCGTAAGCTCGAAGAGGGTGGAC
ATGAGCTGCAAAAGATAGCCGAGAGCTACAACGTGGCTCCATTTCTGTAC
AAGTCGTTGACGAATCGGCTCGAGCCCATGAGGTTAGATGCTGATGATAA
CCTTGGTATGCGGGAGCCGGTGCCTTTCAAAATGCTACCTATGCATCGTG
ACGACCGCTGCGTGGCGTTCATTGGCCATTGGCTTCGTCGCATGAATGGC
CGTCTCAACCCTATCGCACAACACGAGGCCTGA
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Coding sequence (CDS) from alignment at tig00000077_pilon:144142..144624-

>Ggra2861.t1 ID=Ggra2861.t1|Name=Ggra2861.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=483bp|location=Sequence derived from alignment at tig00000077_pilon:144142..144624- (Gracilaria gracilis GNS1m male)
ATGTGCGCCAAACACCCTGAACCCGCTTCTCTCAACGCCACCCTAAACGC
GTGCGGCCGCTGCCTCATCGTGCGCTACTGCAGCGTCAACTGTCAGCGCA
GAGACTATCCGTCACAGAAAGTGCAGTGCAAGCAGCTGAGCGCGCTTCAA
CGCCACCTTCGTCTACACAGCGCGTTTGAGCAGTACTACGGCCATGTGTT
CGAGGTGGCGGGAGGCCGAGAGTATTGTCGTAAGCTCGAAGAGGGTGGAC
ATGAGCTGCAAAAGATAGCCGAGAGCTACAACGTGGCTCCATTTCTGTAC
AAGTCGTTGACGAATCGGCTCGAGCCCATGAGGTTAGATGCTGATGATAA
CCTTGGTATGCGGGAGCCGGTGCCTTTCAAAATGCTACCTATGCATCGTG
ACGACCGCTGCGTGGCGTTCATTGGCCATTGGCTTCGTCGCATGAATGGC
CGTCTCAACCCTATCGCACAACACGAGGCCTGA
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