Ggra9255.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9255.t1
Unique NameGgra9255.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length114
Homology
BLAST of Ggra9255.t1 vs. uniprot
Match: A0A2V3IDZ2 (DNA polymerase delta subunit 4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDZ2_9FLOR)

HSP 1 Score: 146 bits (368), Expect = 2.710e-42
Identity = 69/120 (57.50%), Postives = 88/120 (73.33%), Query Frame = 0
Query:    1 MDDFVRVEKPIAPSLRTAPKKKDEAE-------PIPSVIEWRFVTSERADDLSVDSLSKQQMEQVLRLFDLNPSYGPFVGMDRQLRWQRAENVGLHPPLLVKRILDTGNTVSYRKGGRLW 113
            MD FVRVEKP++PSLR   KK+ + +       P+PS ++W F+ S+ A  + V +LSK Q+E +LRLFDLNP+YGPFVG+DR LRWQRAE  GL PPLLVKR++DTG  VS +  GRLW
Sbjct:   71 MDKFVRVEKPLSPSLRETSKKRTQPQAAPQEFVPLPSPVDWHFIQSDDATRVDVHALSKDQLEHILRLFDLNPAYGPFVGVDRLLRWQRAEQCGLSPPLLVKRVIDTGIAVSQQHAGRLW 190          
BLAST of Ggra9255.t1 vs. uniprot
Match: A0A061H323 (Uncharacterized protein n=2 Tax=Pseudozyma flocculosa TaxID=84751 RepID=A0A061H323_9BASI)

HSP 1 Score: 62.4 bits (150), Expect = 9.200e-10
Identity = 31/75 (41.33%), Postives = 44/75 (58.67%), Query Frame = 0
Query:   34 WRFVTSERADDLSVDSLSKQQMEQVLRLFDLNPSYGPFVGMDRQLRWQRAENVGLHPPLLVKRILDTGN-TVSYR 107
            W    S       V +  + +++ +LRLFDL+P+YGP +G+ R  RW+RAE +G HPP  V  IL T   T+ YR
Sbjct:   86 WNRTRSAMGRVRPVHAEGQNRIQHILRLFDLDPTYGPCIGLTRLERWERAEELGEHPPREVYDILTTKQGTLDYR 160          
BLAST of Ggra9255.t1 vs. uniprot
Match: A0A5C3DVR8 (Related to DNA polymerase delta subunit 4 n=2 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3DVR8_9BASI)

HSP 1 Score: 61.6 bits (148), Expect = 1.660e-9
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 0
Query:   52 KQQMEQVLRLFDLNPSYGPFVGMDRQLRWQRAENVGLHPPLLVKRILDTGNTVSYRK 108
            + +++Q+LR+FDL+P+YGP +GM R  RWQRA+++ L PP  +  IL T   V Y K
Sbjct:   99 ENRIQQILRVFDLDPNYGPCMGMSRLERWQRAKDLDLDPPQEIHDILITKEGVKYHK 155          
BLAST of Ggra9255.t1 vs. uniprot
Match: DNA polymerase delta subunit 4 n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D2825A (DNA polymerase delta subunit 4 n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D2825A)

HSP 1 Score: 58.9 bits (141), Expect = 3.420e-9
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 0
Query:   35 RFVTSERADDLSVDSLSKQQMEQVLRLFDLNPSYGPFVGMDRQLRWQRAENVGLHPPLLVKRILDTGNTVS 105
            ++V  + ADD         Q+E+VLR FD+N +YGP +GM R  RW+RA+ +GL+PP  V+ +L  G   S
Sbjct:   15 KWVVYDFADD-------HNQVEEVLRQFDMNMAYGPCLGMTRLSRWERAQKLGLNPPKEVEVLLKGGRVSS 78          
BLAST of Ggra9255.t1 vs. uniprot
Match: DNA polymerase delta subunit 4-like isoform X1 n=3 Tax=Styela clava TaxID=7725 RepID=UPI001939C268 (DNA polymerase delta subunit 4-like isoform X1 n=3 Tax=Styela clava TaxID=7725 RepID=UPI001939C268)

HSP 1 Score: 60.5 bits (145), Expect = 3.550e-9
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 0
Query:   42 ADDLSVDSLSKQQMEQ---VLRLFDLNPSYGPFVGMDRQLRWQRAENVGLHPPLLVKRILDTG-NTVSY 106
            A D S+      Q E+   +LR+FDL+PS+GP V   R  RW+RA N+GL PP+ VK ++++  N + Y
Sbjct:   66 ASDTSISDTRNAQTERDMKILRMFDLDPSFGPSVDSTRMERWERAMNLGLSPPMHVKNLINSNSNNIQY 134          
BLAST of Ggra9255.t1 vs. uniprot
Match: A0A1Y1UH19 (DNA polymerase delta, subunit 4-domain-containing protein n=1 Tax=Kockovaella imperatae TaxID=4999 RepID=A0A1Y1UH19_9TREE)

HSP 1 Score: 60.8 bits (146), Expect = 4.840e-9
Identity = 27/58 (46.55%), Postives = 41/58 (70.69%), Query Frame = 0
Query:   54 QMEQVLRLFDLNPSYGPFVGMDRQLRWQRAENVGLHPPLLVKRILDTGN---TVSYRK 108
            ++  VLR+FD+  +YGPF+G+ R  RW+RA+ +GL+PP  +KRIL T      V+YR+
Sbjct:  123 EIHHVLRIFDMTSAYGPFIGVTRLQRWERAKKLGLNPPEEIKRILTTQQGEEDVTYRE 180          
BLAST of Ggra9255.t1 vs. uniprot
Match: A0A077QQD9 (Related to DNA polymerase delta subunit 4 n=1 Tax=Melanopsichium pennsylvanicum 4 TaxID=1398559 RepID=A0A077QQD9_9BASI)

HSP 1 Score: 60.5 bits (145), Expect = 4.910e-9
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 0
Query:   52 KQQMEQVLRLFDLNPSYGPFVGMDRQLRWQRAENVGLHPPLLVKRILDTGNTVSYRK 108
            + +++Q+LR+FDL+P+YGP +GM R  RWQRA+++ L PP  +  IL T   VS  K
Sbjct:  103 ENRIQQILRVFDLDPNYGPCMGMSRLERWQRAKDLDLDPPQEIHDILTTKQGVSEHK 159          
BLAST of Ggra9255.t1 vs. uniprot
Match: V7CLH2 (Uncharacterized protein n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=V7CLH2_PHAVU)

HSP 1 Score: 59.3 bits (142), Expect = 5.110e-9
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 0
Query:   54 QMEQVLRLFDLNPSYGPFVGMDRQLRWQRAENVGLHPPLLVKRILDTGNT-VSYRKGGRL 112
            + E VLR FDLN +YGP +GM R  RW+RA+ +GL+PPL ++ +L +G   +    GGR+
Sbjct:   59 ESEVVLRQFDLNMAYGPCLGMARLARWERAQRLGLNPPLEIESLLKSGKVQMESLWGGRI 118          
BLAST of Ggra9255.t1 vs. uniprot
Match: A0A4U6XQI2 (DNA polymerase delta subunit 4 n=4 Tax=Colletotrichum destructivum species complex TaxID=2707350 RepID=A0A4U6XQI2_9PEZI)

HSP 1 Score: 60.8 bits (146), Expect = 5.510e-9
Identity = 36/109 (33.03%), Postives = 57/109 (52.29%), Query Frame = 0
Query:    3 DFVRVEKPIAPSLRTAPKKKDEAEPIPSVIE------------WRFVTSER-ADDLSVDSLSKQQMEQVLRLFDLNPSYGPFVGMDRQLRWQRAENVGLHPPLLVKRIL 98
            D + ++KP  P +  A  ++D  E   S +             W+ V ++R A  +    +S    E+VLR FD++  YGP +G+ R  RWQRAE +GL+PP+ V  +L
Sbjct:   64 DEIHLDKPATPKIEEAKVEEDVPEKSDSAVRAEKINDAQISKYWKSVEAQRIAPRIHQGDVSFP--EKVLRYFDVSSQYGPCIGLQRMKRWQRAERLGLNPPIEVLAVL 170          
BLAST of Ggra9255.t1 vs. uniprot
Match: A0A139AAS8 (Uncharacterized protein n=2 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AAS8_GONPJ)

HSP 1 Score: 59.7 bits (143), Expect = 6.490e-9
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 0
Query:   40 ERADDLSVDSLSKQ--QMEQVLRLFDLNPSYGPFVGMDRQLRWQRAENVGLHPPLLVKRILDTGNTVSYRK 108
            E   D  V  L K   +++  LR FDL+  YGP VGM R  RW+RA+ +GL PP LV+R+L T    + R+
Sbjct:   62 ESIPDAEVSRLMKDPSKLDSFLREFDLDSRYGPHVGMTRMERWERADELGLAPPDLVRRVLSTVKAQNERE 132          
The following BLAST results are available for this feature:
BLAST of Ggra9255.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IDZ22.710e-4257.50DNA polymerase delta subunit 4 n=1 Tax=Gracilariop... [more]
A0A061H3239.200e-1041.33Uncharacterized protein n=2 Tax=Pseudozyma floccul... [more]
A0A5C3DVR81.660e-947.37Related to DNA polymerase delta subunit 4 n=2 Tax=... [more]
DNA polymerase delta subunit 4 n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D2825A3.420e-942.25DNA polymerase delta subunit 4 n=1 Tax=Syzygium ol... [more]
DNA polymerase delta subunit 4-like isoform X1 n=3 Tax=Styela clava TaxID=7725 RepID=UPI001939C2683.550e-942.03DNA polymerase delta subunit 4-like isoform X1 n=3... [more]
A0A1Y1UH194.840e-946.55DNA polymerase delta, subunit 4-domain-containing ... [more]
A0A077QQD94.910e-947.37Related to DNA polymerase delta subunit 4 n=1 Tax=... [more]
V7CLH25.110e-946.67Uncharacterized protein n=1 Tax=Phaseolus vulgaris... [more]
A0A4U6XQI25.510e-933.03DNA polymerase delta subunit 4 n=4 Tax=Colletotric... [more]
A0A139AAS86.490e-943.66Uncharacterized protein n=2 Tax=Gonapodya prolifer... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007218DNA polymerase delta, subunit 4PFAMPF04081DNA_pol_delta_4coord: 33..101
e-value: 8.2E-18
score: 65.0
IPR007218DNA polymerase delta, subunit 4PANTHERPTHR14303DNA POLYMERASE DELTA SUBUNIT 4coord: 26..103
NoneNo IPR availablePANTHERPTHR14303:SF0DNA POLYMERASE DELTA SUBUNIT 4coord: 26..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:606662..607003 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9255.t1Ggra9255.t1Gracilaria gracilis GNS1m malemRNAtig00000075_pilon 606662..607003 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9255.t1 ID=Ggra9255.t1|Name=Ggra9255.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=114bp
MDDFVRVEKPIAPSLRTAPKKKDEAEPIPSVIEWRFVTSERADDLSVDSL
SKQQMEQVLRLFDLNPSYGPFVGMDRQLRWQRAENVGLHPPLLVKRILDT
GNTVSYRKGGRLW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007218DNA_pol_delta_4