Ggra9142.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9142.t1
Unique NameGgra9142.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:87648..88451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42099.EPrPV00000014134
PFAMsLipase_GDSL_2
Max annot lvl121069|Pythiales
Evalue2.01e-14
EggNOG OGs2AVME@1|root,2RZWN@2759|Eukaryota,1MD8H@121069|Pythiales
Descriptionfunction. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9142Ggra9142Gracilaria gracilis GNS1m malegenetig00000075_pilon 87648..88451 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9142.t1.start1Ggra9142.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 87648..87650 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9142.t1.CDS1Ggra9142.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 87648..88451 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9142.t1.exon1Ggra9142.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 87648..88451 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9142.t1.stop1Ggra9142.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 88449..88451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9142.t1Ggra9142.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 87648..88451 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9142.t1 ID=Ggra9142.t1|Name=Ggra9142.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=268bp
MAVFATLLNALSTLYLYVRIALHRVLLFISQTIEYRTAPVKREFHRTVLL
LGDGTAEGVGDSFGHTGLCSRLNALIRKERDQSGLRMVWSVLTCGRIFTK
AADWQPVGDQSRTLFHRLVKKRMFVHANVVVLLFGMHDDMADPQLPNHIA
DIARAVALLGKHVVVATLPNYYPHQDERYATIVAANQKLKRLIKQVAEEV
KPSRISVTCDVDTSKTTCMGAHTSTQYNDFFTLNGNGYRLFSRDVYEQLV
FAAKRVEWSYWKDKIPM*
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spliced messenger RNA

>Ggra9142.t1 ID=Ggra9142.t1|Name=Ggra9142.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00000075_pilon:87648..88451+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGTGTTCGCCACCCTGCTCAACGCGCTCTCCACGCTGTACTTGTA
CGTGCGCATCGCGTTACACCGCGTGCTGCTCTTCATCTCGCAGACCATCG
AGTACCGCACCGCGCCGGTGAAGCGCGAGTTTCACCGCACCGTGCTGCTG
CTGGGCGACGGCACTGCGGAGGGTGTTGGTGATTCCTTTGGTCATACCGG
CTTGTGTTCGCGCTTGAACGCGCTCATCAGGAAGGAGCGCGACCAGTCGG
GGCTTCGCATGGTGTGGAGCGTCTTGACTTGCGGCCGCATTTTCACCAAG
GCTGCTGATTGGCAGCCTGTTGGCGACCAGAGTCGCACCTTGTTTCACCG
CCTGGTCAAGAAGAGGATGTTTGTGCACGCTAATGTGGTCGTCTTGTTGT
TTGGAATGCATGATGATATGGCTGATCCGCAGTTACCGAACCACATCGCC
GACATTGCCCGAGCCGTCGCCTTGTTAGGGAAGCACGTCGTGGTCGCCAC
TTTGCCCAACTACTATCCGCACCAAGACGAACGGTATGCGACCATCGTCG
CCGCCAACCAGAAGCTAAAGCGCCTGATAAAACAGGTTGCGGAAGAAGTG
AAGCCGTCGCGAATCTCGGTCACATGTGATGTCGATACGTCTAAGACAAC
GTGTATGGGCGCTCACACCAGCACGCAGTACAACGACTTTTTCACTCTCA
ACGGCAATGGCTACCGTCTGTTTTCGCGAGACGTGTACGAACAGCTTGTA
TTCGCCGCCAAGCGCGTGGAATGGTCGTATTGGAAGGACAAAATCCCCAT
GTAG
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protein sequence of Ggra9142.t1

>Ggra9142.t1 ID=Ggra9142.t1|Name=Ggra9142.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=268bp
MAVFATLLNALSTLYLYVRIALHRVLLFISQTIEYRTAPVKREFHRTVLL
LGDGTAEGVGDSFGHTGLCSRLNALIRKERDQSGLRMVWSVLTCGRIFTK
AADWQPVGDQSRTLFHRLVKKRMFVHANVVVLLFGMHDDMADPQLPNHIA
DIARAVALLGKHVVVATLPNYYPHQDERYATIVAANQKLKRLIKQVAEEV
KPSRISVTCDVDTSKTTCMGAHTSTQYNDFFTLNGNGYRLFSRDVYEQLV
FAAKRVEWSYWKDKIPM*
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mRNA from alignment at tig00000075_pilon:87648..88451+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9142.t1 ID=Ggra9142.t1|Name=Ggra9142.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00000075_pilon:87648..88451+ (Gracilaria gracilis GNS1m male)
ATGGCAGTGTTCGCCACCCTGCTCAACGCGCTCTCCACGCTGTACTTGTA
CGTGCGCATCGCGTTACACCGCGTGCTGCTCTTCATCTCGCAGACCATCG
AGTACCGCACCGCGCCGGTGAAGCGCGAGTTTCACCGCACCGTGCTGCTG
CTGGGCGACGGCACTGCGGAGGGTGTTGGTGATTCCTTTGGTCATACCGG
CTTGTGTTCGCGCTTGAACGCGCTCATCAGGAAGGAGCGCGACCAGTCGG
GGCTTCGCATGGTGTGGAGCGTCTTGACTTGCGGCCGCATTTTCACCAAG
GCTGCTGATTGGCAGCCTGTTGGCGACCAGAGTCGCACCTTGTTTCACCG
CCTGGTCAAGAAGAGGATGTTTGTGCACGCTAATGTGGTCGTCTTGTTGT
TTGGAATGCATGATGATATGGCTGATCCGCAGTTACCGAACCACATCGCC
GACATTGCCCGAGCCGTCGCCTTGTTAGGGAAGCACGTCGTGGTCGCCAC
TTTGCCCAACTACTATCCGCACCAAGACGAACGGTATGCGACCATCGTCG
CCGCCAACCAGAAGCTAAAGCGCCTGATAAAACAGGTTGCGGAAGAAGTG
AAGCCGTCGCGAATCTCGGTCACATGTGATGTCGATACGTCTAAGACAAC
GTGTATGGGCGCTCACACCAGCACGCAGTACAACGACTTTTTCACTCTCA
ACGGCAATGGCTACCGTCTGTTTTCGCGAGACGTGTACGAACAGCTTGTA
TTCGCCGCCAAGCGCGTGGAATGGTCGTATTGGAAGGACAAAATCCCCAT
GTAG
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Coding sequence (CDS) from alignment at tig00000075_pilon:87648..88451+

>Ggra9142.t1 ID=Ggra9142.t1|Name=Ggra9142.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=804bp|location=Sequence derived from alignment at tig00000075_pilon:87648..88451+ (Gracilaria gracilis GNS1m male)
ATGGCAGTGTTCGCCACCCTGCTCAACGCGCTCTCCACGCTGTACTTGTA
CGTGCGCATCGCGTTACACCGCGTGCTGCTCTTCATCTCGCAGACCATCG
AGTACCGCACCGCGCCGGTGAAGCGCGAGTTTCACCGCACCGTGCTGCTG
CTGGGCGACGGCACTGCGGAGGGTGTTGGTGATTCCTTTGGTCATACCGG
CTTGTGTTCGCGCTTGAACGCGCTCATCAGGAAGGAGCGCGACCAGTCGG
GGCTTCGCATGGTGTGGAGCGTCTTGACTTGCGGCCGCATTTTCACCAAG
GCTGCTGATTGGCAGCCTGTTGGCGACCAGAGTCGCACCTTGTTTCACCG
CCTGGTCAAGAAGAGGATGTTTGTGCACGCTAATGTGGTCGTCTTGTTGT
TTGGAATGCATGATGATATGGCTGATCCGCAGTTACCGAACCACATCGCC
GACATTGCCCGAGCCGTCGCCTTGTTAGGGAAGCACGTCGTGGTCGCCAC
TTTGCCCAACTACTATCCGCACCAAGACGAACGGTATGCGACCATCGTCG
CCGCCAACCAGAAGCTAAAGCGCCTGATAAAACAGGTTGCGGAAGAAGTG
AAGCCGTCGCGAATCTCGGTCACATGTGATGTCGATACGTCTAAGACAAC
GTGTATGGGCGCTCACACCAGCACGCAGTACAACGACTTTTTCACTCTCA
ACGGCAATGGCTACCGTCTGTTTTCGCGAGACGTGTACGAACAGCTTGTA
TTCGCCGCCAAGCGCGTGGAATGGTCGTATTGGAAGGACAAAATCCCCAT
GTAG
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