Ggra9235.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9235.t1
Unique NameGgra9235.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length717
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:456056..458206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703644.1
Preferred nameWDTC1
PFAMsWD40
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K11795,ko:K11804,ko:K11807,ko:K19199
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
GOsGO:0000122,GO:0000151,GO:0001101,GO:0001701,GO:0003674,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006355,GO:0006357,GO:0006464,GO:0006629,GO:0006807,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0008361,GO:0009269,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010035,GO:0010243,GO:0010468,GO:0010556,GO:0010558,GO:0010565,GO:0010605,GO:0010629,GO:0010883,GO:0010888,GO:0010889,GO:0010891,GO:0016043,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0019318,GO:0019538,GO:0019725,GO:0019899,GO:0030234,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032535,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0032991,GO:0035264,GO:0036211,GO:0040007,GO:0042221,GO:0042304,GO:0042393,GO:0042592,GO:0042826,GO:0043009,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043434,GO:0043687,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045717,GO:0045833,GO:0045892,GO:0045922,GO:0045934,GO:0046890,GO:0048519,GO:0048523,GO:0048589,GO:0048856,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051055,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0055082,GO:0060255,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070647,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0090066,GO:0098772,GO:1901564,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1905952,GO:1905953,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Evalue2.55e-41
EggNOG OGsKOG1334@1|root,KOG1310@2759|Eukaryota
EC2.1.1.43
Descriptionnegative regulation of fatty acid biosynthetic process
COG categoryS
BRITEko00000,ko00001,ko01000,ko03036,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9235Ggra9235Gracilaria gracilis GNS1m malegenetig00000075_pilon 456056..458206 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9235.t1.start1Ggra9235.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 456056..456058 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9235.t1.CDS1Ggra9235.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 456056..458206 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9235.t1.exon1Ggra9235.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 456056..458206 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9235.t1.stop1Ggra9235.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 458204..458206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9235.t1Ggra9235.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 456056..458206 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9235.t1 ID=Ggra9235.t1|Name=Ggra9235.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=717bp
MDVGFRNLSSILRQREYDLISRPESILHGHHSLTRNMDWSVQLAGHMGCV
NRLALDEEGKFLLSGSDDCTLRIWSIEDHNLVLPKGVITPGHVNNIFGVA
FMPNTGNSLVASAGLDQQVHLTNVETSKSLRWICHTDSVKTVAPLDANVF
ITASKDGTSRLFDARIPPTAHPSDSSIIVVNIPCTNPFSNGINSAIPSPM
FPNHILVSSGDPYLRIFDLRFNTSNRLNSPRISQLKSRTTCIESYCPSHL
YELAPERCSPSELMHPAYVTFATFSSDASQIVASYYMDAVHVFNRRQQSQ
SGPYYPSFKFNSERKRVVWLLIQEAAERLLNGSVGCAKTAIAKANSVLEL
EPQNILALLYKAESLLLRENYSDFREAFETLQLLINLIREQPRLITALWG
SDGPMCPPCFPESIGNWERKAQIWLMIFEFQQIRAMYKMIPYSPVGVLQP
GVNGLVTKRRFEHLRELCSELMERRWKLFSKQPTSNGHRSTNSPGSMYDC
SLLRDDIHRDALGTEEESSRLYSTEFSRLRKQVLVRLVEKLASSKLNMLL
FAFDEKIADLEPRNPNSQTNRRLATTKEYWIRVMNQDHIPHHFARELKAL
EAEEKRLLAGFDSEALWGVRPRKELPCKRYHGHQSEKTDIKEARFYGADN
QVVLSGSDDGFVYMWAAGTCELLTRVSADDQIVNCVLPHPYRSMILVSGI
DNTIKVLTPDLSSSEE*
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spliced messenger RNA

>Ggra9235.t1 ID=Ggra9235.t1|Name=Ggra9235.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2151bp|location=Sequence derived from alignment at tig00000075_pilon:456056..458206+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTGGGCTTTCGCAACCTGTCGTCTATTCTTCGCCAACGCGAATA
TGACCTGATTTCACGCCCCGAGAGCATTTTACATGGCCACCACTCTCTCA
CCCGCAACATGGACTGGTCTGTACAACTGGCAGGGCATATGGGCTGCGTC
AACCGTCTGGCACTGGACGAAGAGGGAAAGTTTCTTCTCTCCGGCTCAGA
TGACTGTACTCTTCGGATCTGGTCCATCGAAGACCATAATCTCGTCCTCC
CCAAGGGAGTCATCACCCCGGGACACGTCAACAACATTTTCGGTGTCGCG
TTCATGCCGAATACCGGAAACTCCCTTGTGGCATCTGCGGGCTTGGATCA
ACAAGTTCACCTCACCAACGTCGAAACTTCCAAGAGTCTGAGGTGGATTT
GTCACACGGACTCCGTCAAGACCGTTGCGCCCTTAGATGCAAACGTATTC
ATCACGGCGTCAAAGGATGGAACCTCACGTTTATTCGATGCTAGAATCCC
TCCCACTGCCCATCCGTCCGATTCGTCTATCATTGTTGTTAACATACCGT
GCACCAACCCATTTTCGAACGGCATCAACTCAGCCATACCATCGCCAATG
TTCCCCAATCACATCTTGGTGTCCTCCGGCGACCCCTACTTGCGAATATT
CGACCTACGCTTCAACACTAGCAATCGCCTCAACTCGCCCCGAATCTCGC
AGCTCAAGTCGCGCACAACCTGCATTGAGTCCTACTGTCCATCTCATTTG
TATGAACTAGCCCCGGAGCGTTGTTCTCCAAGTGAGCTCATGCATCCAGC
TTACGTTACATTCGCCACCTTTTCATCAGATGCAAGCCAGATTGTGGCAT
CGTACTATATGGATGCGGTTCATGTTTTCAATCGCCGTCAACAATCACAG
TCTGGGCCTTACTATCCAAGCTTCAAGTTCAACTCCGAAAGGAAACGTGT
AGTGTGGTTGTTGATTCAAGAGGCTGCTGAAAGGCTCTTAAACGGTTCTG
TGGGTTGCGCGAAAACTGCAATAGCGAAAGCCAACAGCGTTCTCGAATTG
GAACCCCAAAATATTCTTGCGTTACTCTATAAAGCCGAGAGTTTGCTTTT
GCGTGAAAACTATAGTGACTTTCGAGAAGCGTTTGAAACCCTTCAACTCT
TAATCAACCTTATTAGGGAACAGCCTCGGCTTATAACTGCTCTATGGGGA
TCCGATGGTCCAATGTGTCCACCATGCTTTCCAGAATCCATAGGTAACTG
GGAACGAAAGGCGCAGATATGGTTGATGATCTTCGAGTTCCAACAAATAA
GAGCAATGTATAAAATGATACCATACTCACCAGTCGGAGTTTTGCAACCC
GGTGTAAATGGATTAGTGACAAAAAGACGCTTCGAACATCTTAGAGAGCT
CTGCAGTGAGCTAATGGAGAGAAGGTGGAAATTGTTTAGCAAACAACCGA
CTTCTAATGGTCATCGATCTACCAACTCTCCGGGATCCATGTATGATTGC
TCTTTGCTCAGAGATGATATACATAGAGACGCTCTAGGCACTGAGGAAGA
ATCATCACGCCTTTATAGCACAGAGTTTTCGCGGCTGCGGAAGCAAGTCT
TGGTTCGCCTAGTAGAGAAACTTGCTTCATCTAAACTGAACATGCTTCTC
TTTGCGTTTGACGAAAAAATTGCGGACCTCGAACCTCGTAACCCGAACTC
ACAAACCAATCGTCGTTTGGCAACTACAAAGGAGTACTGGATAAGGGTTA
TGAATCAAGACCATATCCCGCATCATTTTGCGAGAGAGTTGAAGGCATTG
GAAGCTGAGGAAAAACGACTATTGGCAGGATTTGACTCCGAGGCGTTGTG
GGGCGTCCGACCACGAAAGGAACTTCCATGCAAAAGATATCATGGACATC
AAAGCGAAAAGACAGATATAAAAGAAGCCCGATTCTATGGTGCGGATAAT
CAAGTGGTTCTATCTGGGTCCGACGACGGTTTTGTTTATATGTGGGCTGC
GGGAACCTGCGAACTGCTAACCCGAGTTTCCGCCGACGATCAAATTGTCA
ACTGTGTTCTGCCGCACCCCTACCGATCGATGATACTTGTGTCTGGAATA
GATAATACGATCAAGGTGTTAACTCCCGATTTATCAAGTAGCGAGGAATG
A
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protein sequence of Ggra9235.t1

>Ggra9235.t1 ID=Ggra9235.t1|Name=Ggra9235.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=717bp
MDVGFRNLSSILRQREYDLISRPESILHGHHSLTRNMDWSVQLAGHMGCV
NRLALDEEGKFLLSGSDDCTLRIWSIEDHNLVLPKGVITPGHVNNIFGVA
FMPNTGNSLVASAGLDQQVHLTNVETSKSLRWICHTDSVKTVAPLDANVF
ITASKDGTSRLFDARIPPTAHPSDSSIIVVNIPCTNPFSNGINSAIPSPM
FPNHILVSSGDPYLRIFDLRFNTSNRLNSPRISQLKSRTTCIESYCPSHL
YELAPERCSPSELMHPAYVTFATFSSDASQIVASYYMDAVHVFNRRQQSQ
SGPYYPSFKFNSERKRVVWLLIQEAAERLLNGSVGCAKTAIAKANSVLEL
EPQNILALLYKAESLLLRENYSDFREAFETLQLLINLIREQPRLITALWG
SDGPMCPPCFPESIGNWERKAQIWLMIFEFQQIRAMYKMIPYSPVGVLQP
GVNGLVTKRRFEHLRELCSELMERRWKLFSKQPTSNGHRSTNSPGSMYDC
SLLRDDIHRDALGTEEESSRLYSTEFSRLRKQVLVRLVEKLASSKLNMLL
FAFDEKIADLEPRNPNSQTNRRLATTKEYWIRVMNQDHIPHHFARELKAL
EAEEKRLLAGFDSEALWGVRPRKELPCKRYHGHQSEKTDIKEARFYGADN
QVVLSGSDDGFVYMWAAGTCELLTRVSADDQIVNCVLPHPYRSMILVSGI
DNTIKVLTPDLSSSEE*
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mRNA from alignment at tig00000075_pilon:456056..458206+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9235.t1 ID=Ggra9235.t1|Name=Ggra9235.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2151bp|location=Sequence derived from alignment at tig00000075_pilon:456056..458206+ (Gracilaria gracilis GNS1m male)
ATGGACGTGGGCTTTCGCAACCTGTCGTCTATTCTTCGCCAACGCGAATA TGACCTGATTTCACGCCCCGAGAGCATTTTACATGGCCACCACTCTCTCA CCCGCAACATGGACTGGTCTGTACAACTGGCAGGGCATATGGGCTGCGTC AACCGTCTGGCACTGGACGAAGAGGGAAAGTTTCTTCTCTCCGGCTCAGA TGACTGTACTCTTCGGATCTGGTCCATCGAAGACCATAATCTCGTCCTCC CCAAGGGAGTCATCACCCCGGGACACGTCAACAACATTTTCGGTGTCGCG TTCATGCCGAATACCGGAAACTCCCTTGTGGCATCTGCGGGCTTGGATCA ACAAGTTCACCTCACCAACGTCGAAACTTCCAAGAGTCTGAGGTGGATTT GTCACACGGACTCCGTCAAGACCGTTGCGCCCTTAGATGCAAACGTATTC ATCACGGCGTCAAAGGATGGAACCTCACGTTTATTCGATGCTAGAATCCC TCCCACTGCCCATCCGTCCGATTCGTCTATCATTGTTGTTAACATACCGT GCACCAACCCATTTTCGAACGGCATCAACTCAGCCATACCATCGCCAATG TTCCCCAATCACATCTTGGTGTCCTCCGGCGACCCCTACTTGCGAATATT CGACCTACGCTTCAACACTAGCAATCGCCTCAACTCGCCCCGAATCTCGC AGCTCAAGTCGCGCACAACCTGCATTGAGTCCTACTGTCCATCTCATTTG TATGAACTAGCCCCGGAGCGTTGTTCTCCAAGTGAGCTCATGCATCCAGC TTACGTTACATTCGCCACCTTTTCATCAGATGCAAGCCAGATTGTGGCAT CGTACTATATGGATGCGGTTCATGTTTTCAATCGCCGTCAACAATCACAG TCTGGGCCTTACTATCCAAGCTTCAAGTTCAACTCCGAAAGGAAACGTGT AGTGTGGTTGTTGATTCAAGAGGCTGCTGAAAGGCTCTTAAACGGTTCTG TGGGTTGCGCGAAAACTGCAATAGCGAAAGCCAACAGCGTTCTCGAATTG GAACCCCAAAATATTCTTGCGTTACTCTATAAAGCCGAGAGTTTGCTTTT GCGTGAAAACTATAGTGACTTTCGAGAAGCGTTTGAAACCCTTCAACTCT TAATCAACCTTATTAGGGAACAGCCTCGGCTTATAACTGCTCTATGGGGA TCCGATGGTCCAATGTGTCCACCATGCTTTCCAGAATCCATAGGTAACTG GGAACGAAAGGCGCAGATATGGTTGATGATCTTCGAGTTCCAACAAATAA GAGCAATGTATAAAATGATACCATACTCACCAGTCGGAGTTTTGCAACCC GGTGTAAATGGATTAGTGACAAAAAGACGCTTCGAACATCTTAGAGAGCT CTGCAGTGAGCTAATGGAGAGAAGGTGGAAATTGTTTAGCAAACAACCGA CTTCTAATGGTCATCGATCTACCAACTCTCCGGGATCCATGTATGATTGC TCTTTGCTCAGAGATGATATACATAGAGACGCTCTAGGCACTGAGGAAGA ATCATCACGCCTTTATAGCACAGAGTTTTCGCGGCTGCGGAAGCAAGTCT TGGTTCGCCTAGTAGAGAAACTTGCTTCATCTAAACTGAACATGCTTCTC TTTGCGTTTGACGAAAAAATTGCGGACCTCGAACCTCGTAACCCGAACTC ACAAACCAATCGTCGTTTGGCAACTACAAAGGAGTACTGGATAAGGGTTA TGAATCAAGACCATATCCCGCATCATTTTGCGAGAGAGTTGAAGGCATTG GAAGCTGAGGAAAAACGACTATTGGCAGGATTTGACTCCGAGGCGTTGTG GGGCGTCCGACCACGAAAGGAACTTCCATGCAAAAGATATCATGGACATC AAAGCGAAAAGACAGATATAAAAGAAGCCCGATTCTATGGTGCGGATAAT CAAGTGGTTCTATCTGGGTCCGACGACGGTTTTGTTTATATGTGGGCTGC GGGAACCTGCGAACTGCTAACCCGAGTTTCCGCCGACGATCAAATTGTCA ACTGTGTTCTGCCGCACCCCTACCGATCGATGATACTTGTGTCTGGAATA GATAATACGATCAAGGTGTTAACTCCCGATTTATCAAGTAGCGAGGAATG A
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Coding sequence (CDS) from alignment at tig00000075_pilon:456056..458206+

>Ggra9235.t1 ID=Ggra9235.t1|Name=Ggra9235.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2151bp|location=Sequence derived from alignment at tig00000075_pilon:456056..458206+ (Gracilaria gracilis GNS1m male)
ATGGACGTGGGCTTTCGCAACCTGTCGTCTATTCTTCGCCAACGCGAATA
TGACCTGATTTCACGCCCCGAGAGCATTTTACATGGCCACCACTCTCTCA
CCCGCAACATGGACTGGTCTGTACAACTGGCAGGGCATATGGGCTGCGTC
AACCGTCTGGCACTGGACGAAGAGGGAAAGTTTCTTCTCTCCGGCTCAGA
TGACTGTACTCTTCGGATCTGGTCCATCGAAGACCATAATCTCGTCCTCC
CCAAGGGAGTCATCACCCCGGGACACGTCAACAACATTTTCGGTGTCGCG
TTCATGCCGAATACCGGAAACTCCCTTGTGGCATCTGCGGGCTTGGATCA
ACAAGTTCACCTCACCAACGTCGAAACTTCCAAGAGTCTGAGGTGGATTT
GTCACACGGACTCCGTCAAGACCGTTGCGCCCTTAGATGCAAACGTATTC
ATCACGGCGTCAAAGGATGGAACCTCACGTTTATTCGATGCTAGAATCCC
TCCCACTGCCCATCCGTCCGATTCGTCTATCATTGTTGTTAACATACCGT
GCACCAACCCATTTTCGAACGGCATCAACTCAGCCATACCATCGCCAATG
TTCCCCAATCACATCTTGGTGTCCTCCGGCGACCCCTACTTGCGAATATT
CGACCTACGCTTCAACACTAGCAATCGCCTCAACTCGCCCCGAATCTCGC
AGCTCAAGTCGCGCACAACCTGCATTGAGTCCTACTGTCCATCTCATTTG
TATGAACTAGCCCCGGAGCGTTGTTCTCCAAGTGAGCTCATGCATCCAGC
TTACGTTACATTCGCCACCTTTTCATCAGATGCAAGCCAGATTGTGGCAT
CGTACTATATGGATGCGGTTCATGTTTTCAATCGCCGTCAACAATCACAG
TCTGGGCCTTACTATCCAAGCTTCAAGTTCAACTCCGAAAGGAAACGTGT
AGTGTGGTTGTTGATTCAAGAGGCTGCTGAAAGGCTCTTAAACGGTTCTG
TGGGTTGCGCGAAAACTGCAATAGCGAAAGCCAACAGCGTTCTCGAATTG
GAACCCCAAAATATTCTTGCGTTACTCTATAAAGCCGAGAGTTTGCTTTT
GCGTGAAAACTATAGTGACTTTCGAGAAGCGTTTGAAACCCTTCAACTCT
TAATCAACCTTATTAGGGAACAGCCTCGGCTTATAACTGCTCTATGGGGA
TCCGATGGTCCAATGTGTCCACCATGCTTTCCAGAATCCATAGGTAACTG
GGAACGAAAGGCGCAGATATGGTTGATGATCTTCGAGTTCCAACAAATAA
GAGCAATGTATAAAATGATACCATACTCACCAGTCGGAGTTTTGCAACCC
GGTGTAAATGGATTAGTGACAAAAAGACGCTTCGAACATCTTAGAGAGCT
CTGCAGTGAGCTAATGGAGAGAAGGTGGAAATTGTTTAGCAAACAACCGA
CTTCTAATGGTCATCGATCTACCAACTCTCCGGGATCCATGTATGATTGC
TCTTTGCTCAGAGATGATATACATAGAGACGCTCTAGGCACTGAGGAAGA
ATCATCACGCCTTTATAGCACAGAGTTTTCGCGGCTGCGGAAGCAAGTCT
TGGTTCGCCTAGTAGAGAAACTTGCTTCATCTAAACTGAACATGCTTCTC
TTTGCGTTTGACGAAAAAATTGCGGACCTCGAACCTCGTAACCCGAACTC
ACAAACCAATCGTCGTTTGGCAACTACAAAGGAGTACTGGATAAGGGTTA
TGAATCAAGACCATATCCCGCATCATTTTGCGAGAGAGTTGAAGGCATTG
GAAGCTGAGGAAAAACGACTATTGGCAGGATTTGACTCCGAGGCGTTGTG
GGGCGTCCGACCACGAAAGGAACTTCCATGCAAAAGATATCATGGACATC
AAAGCGAAAAGACAGATATAAAAGAAGCCCGATTCTATGGTGCGGATAAT
CAAGTGGTTCTATCTGGGTCCGACGACGGTTTTGTTTATATGTGGGCTGC
GGGAACCTGCGAACTGCTAACCCGAGTTTCCGCCGACGATCAAATTGTCA
ACTGTGTTCTGCCGCACCCCTACCGATCGATGATACTTGTGTCTGGAATA
GATAATACGATCAAGGTGTTAACTCCCGATTTATCAAGTAGCGAGGAATG
A
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