Ggra9154.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9154.t1
Unique NameGgra9154.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length186
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:256791..257427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FMQ6
PFAMsNAD_binding_10
Max annot lvl2759|Eukaryota
Evalue5.31e-33
EggNOG OGsCOG0702@1|root,KOG1203@2759|Eukaryota
Descriptiondivinyl chlorophyllide a 8-vinyl-reductase activity
COG categoryGM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9154Ggra9154Gracilaria gracilis GNS1m malegenetig00000075_pilon 256791..257427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9154.t1Ggra9154.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 256791..257427 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9154.t1.start1Ggra9154.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 256791..256793 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9154.t1.CDS1Ggra9154.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 256791..257324 +
Ggra9154.t1.CDS2Ggra9154.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 257404..257427 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9154.t1.exon1Ggra9154.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 256791..257324 +
Ggra9154.t1.exon2Ggra9154.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 257404..257427 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9154.t1.intron1Ggra9154.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 257325..257403 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9154.t1.stop1Ggra9154.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 257425..257427 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9154.t1 ID=Ggra9154.t1|Name=Ggra9154.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=186bp
MASQAGVLGATGGLGRVIVERLLDSTRLTSSPISTVNAFVRDPLKANKVL
PSNDPALVITKLSASDEAHSLRNAFRGVSYMIICVGTTAFPTKNWRNGNT
PTAIDDVAVSRWLKALDEECIRRIVYVSSIGVARKLSFPYFILNAFGVLD
AKQKGEAHVVEAAKRLSCAYAILRPGRLEIVSTEK*
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spliced messenger RNA

>Ggra9154.t1 ID=Ggra9154.t1|Name=Ggra9154.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=558bp|location=Sequence derived from alignment at tig00000075_pilon:256791..257427+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCCCAGGCAGGAGTGTTGGGTGCAACAGGAGGGTTGGGCAGAGT
TATAGTCGAGCGCCTTTTGGACAGCACGCGTTTGACTTCGTCACCGATAA
GTACAGTGAATGCGTTTGTGCGAGATCCGCTGAAGGCGAACAAGGTCTTG
CCATCAAATGACCCTGCGCTTGTTATTACGAAACTTTCAGCCTCTGATGA
AGCCCACAGCTTACGAAATGCTTTTCGCGGTGTTTCGTATATGATTATTT
GTGTGGGAACAACAGCATTTCCAACAAAGAATTGGCGAAATGGGAATACT
CCGACCGCCATTGACGATGTGGCGGTCTCTCGTTGGTTAAAGGCCCTCGA
TGAGGAGTGTATACGTCGCATTGTGTATGTGTCATCGATTGGAGTCGCAC
GAAAGCTTTCCTTTCCATATTTCATCTTGAATGCGTTTGGGGTACTCGAT
GCTAAGCAGAAAGGCGAGGCACATGTGGTTGAAGCGGCAAAGCGTCTTTC
ATGTGCCTATGCAATCTTACGCCCTGGCAGACTTGAGATTGTATCAACGG
AGAAGTGA
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protein sequence of Ggra9154.t1

>Ggra9154.t1 ID=Ggra9154.t1|Name=Ggra9154.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=186bp
MASQAGVLGATGGLGRVIVERLLDSTRLTSSPISTVNAFVRDPLKANKVL
PSNDPALVITKLSASDEAHSLRNAFRGVSYMIICVGTTAFPTKNWRNGNT
PTAIDDVAVSRWLKALDEECIRRIVYVSSIGVARKLSFPYFILNAFGVLD
AKQKGEAHVVEAAKRLSCAYAILRPGRLEIVSTEK*
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mRNA from alignment at tig00000075_pilon:256791..257427+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9154.t1 ID=Ggra9154.t1|Name=Ggra9154.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=637bp|location=Sequence derived from alignment at tig00000075_pilon:256791..257427+ (Gracilaria gracilis GNS1m male)
ATGGCATCCCAGGCAGGAGTGTTGGGTGCAACAGGAGGGTTGGGCAGAGT
TATAGTCGAGCGCCTTTTGGACAGCACGCGTTTGACTTCGTCACCGATAA
GTACAGTGAATGCGTTTGTGCGAGATCCGCTGAAGGCGAACAAGGTCTTG
CCATCAAATGACCCTGCGCTTGTTATTACGAAACTTTCAGCCTCTGATGA
AGCCCACAGCTTACGAAATGCTTTTCGCGGTGTTTCGTATATGATTATTT
GTGTGGGAACAACAGCATTTCCAACAAAGAATTGGCGAAATGGGAATACT
CCGACCGCCATTGACGATGTGGCGGTCTCTCGTTGGTTAAAGGCCCTCGA
TGAGGAGTGTATACGTCGCATTGTGTATGTGTCATCGATTGGAGTCGCAC
GAAAGCTTTCCTTTCCATATTTCATCTTGAATGCGTTTGGGGTACTCGAT
GCTAAGCAGAAAGGCGAGGCACATGTGGTTGAAGCGGCAAAGCGTCTTTC
ATGTGCCTATGCAATCTTACGCCCTGGCAGACTTGTAGGTGCACCACATA
CGAACGTTGGTTCCATAAGGGCGGAGCCCAACGCTAACAAACTCAATTTA
CGGTTCGAAATAGGAGATTGTATCAACGGAGAAGTGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:256791..257427+

>Ggra9154.t1 ID=Ggra9154.t1|Name=Ggra9154.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=558bp|location=Sequence derived from alignment at tig00000075_pilon:256791..257427+ (Gracilaria gracilis GNS1m male)
ATGGCATCCCAGGCAGGAGTGTTGGGTGCAACAGGAGGGTTGGGCAGAGT
TATAGTCGAGCGCCTTTTGGACAGCACGCGTTTGACTTCGTCACCGATAA
GTACAGTGAATGCGTTTGTGCGAGATCCGCTGAAGGCGAACAAGGTCTTG
CCATCAAATGACCCTGCGCTTGTTATTACGAAACTTTCAGCCTCTGATGA
AGCCCACAGCTTACGAAATGCTTTTCGCGGTGTTTCGTATATGATTATTT
GTGTGGGAACAACAGCATTTCCAACAAAGAATTGGCGAAATGGGAATACT
CCGACCGCCATTGACGATGTGGCGGTCTCTCGTTGGTTAAAGGCCCTCGA
TGAGGAGTGTATACGTCGCATTGTGTATGTGTCATCGATTGGAGTCGCAC
GAAAGCTTTCCTTTCCATATTTCATCTTGAATGCGTTTGGGGTACTCGAT
GCTAAGCAGAAAGGCGAGGCACATGTGGTTGAAGCGGCAAAGCGTCTTTC
ATGTGCCTATGCAATCTTACGCCCTGGCAGACTTGAGATTGTATCAACGG
AGAAGTGA
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