Ggra9237.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9237.t1
Unique Name	Ggra9237.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	553

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:462407..464065 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6500.XP_005096627.1
Preferred name	ORC3
PFAMs	ORC3_N
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K02605
KEGG Pathway	ko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG Module	M00284
GOs	GO:0000003,GO:0000082,GO:0000228,GO:0000278,GO:0000781,GO:0000784,GO:0000808,GO:0001667,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005656,GO:0005664,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006267,GO:0006270,GO:0006725,GO:0006807,GO:0006928,GO:0007049,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007610,GO:0007611,GO:0007612,GO:0007631,GO:0007635,GO:0008150,GO:0008152,GO:0008283,GO:0008306,GO:0008355,GO:0009058,GO:0009059,GO:0009888,GO:0009987,GO:0010631,GO:0016043,GO:0016477,GO:0016604,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030536,GO:0030537,GO:0030707,GO:0030855,GO:0031261,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0032993,GO:0033260,GO:0034622,GO:0034641,GO:0034645,GO:0036387,GO:0036388,GO:0040011,GO:0042048,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0046483,GO:0048468,GO:0048477,GO:0048609,GO:0048856,GO:0048869,GO:0048870,GO:0050877,GO:0050890,GO:0050896,GO:0051179,GO:0051674,GO:0051704,GO:0060429,GO:0061351,GO:0065003,GO:0065004,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0090130,GO:0090132,GO:0090304,GO:0097159,GO:0098687,GO:1901360,GO:1901363,GO:1901576,GO:1902299,GO:1903047,GO:1990837
Evalue	1.2e-14
EggNOG OGs	KOG2538@1\|root,KOG2538@2759\|Eukaryota,38GJJ@33154\|Opisthokonta,3BDXG@33208\|Metazoa,3CWXM@33213\|Bilateria
Description	pre-replicative complex assembly involved in nuclear cell cycle DNA replication
COG category	L
BRITE	ko00000,ko00001,ko00002,ko03032,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9237	Ggra9237	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 462407..464065 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9237.t1.start1	Ggra9237.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 462407..462409 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9237.t1.CDS1	Ggra9237.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 462407..464065 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9237.t1.exon1	Ggra9237.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 462407..464065 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9237.t1.stop1	Ggra9237.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 464063..464065 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9237.t1	Ggra9237.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 462407..464065 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:462407..464065+
coding sequence from alignment at tig00000075_pilon:462407..464065+

mRNA sequence

>Ggra9237.t1 ID=Ggra9237.t1|Name=Ggra9237.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=553bp
MLQELESIDFSKQTIISVDDVDRLPESVIRDMVYKCGKVRECEEAQLLAK
RGIPPITLVLGVGVSDARFHSALGIEEAALILPTMISMPTPAECFRGIAN
VIQKTGLEFSGNVFDILCREFVYQDRTISMVMRFLRLLFTLHFYREPLAA
VFCQVLEECAAQTHEETDLGIRRKLSKLLKKEHLIIVEKKCIQDESHANG
LPIQEANRNLCFKACQQLWKRRTRLETLQRLVLHVSDITSRGKSGIAASR
DRSDPLEGTEPLDDLHINVFRAFLVDEDSGEVKYDRFTRPLFETISNAGK
PMMRRILTMTIQEISRSLETTNDEELSSLWREAEKILKELNSISAAQTHP
SQRKRTQRTTSARYAKGGSAARNRRAQIITAMANEVQSSDPLVPIRKKLE
SVILRMSKLIKSLKDIPLHQTILLSDIAELQSFCGGMGGLVEPRSSLFTA
MRQPQRIIDTISPCSHPDTAVAYRILAEGGRLVGLYDWYNSFASIVVAAA
AKQSCGGEVNISQVRPAELQSRFARACSELEVLGVMKYTNRKSDHVARLV
FE*

spliced messenger RNA

>Ggra9237.t1 ID=Ggra9237.t1|Name=Ggra9237.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1659bp|location=Sequence derived from alignment at tig00000075_pilon:462407..464065+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTACAAGAGTTGGAGTCCATTGATTTCTCAAAGCAAACAATAATTTC
TGTGGACGATGTTGACAGACTACCAGAGTCCGTGATCCGTGATATGGTCT
ACAAATGTGGAAAGGTCCGTGAGTGTGAAGAAGCCCAACTTCTTGCGAAA
AGAGGCATTCCTCCTATCACTCTCGTATTAGGCGTGGGAGTATCAGACGC
TCGATTTCACTCTGCCCTTGGAATTGAAGAAGCTGCTCTAATTCTTCCAA
CCATGATCTCGATGCCCACCCCTGCAGAATGCTTTCGGGGTATTGCGAAC
GTCATACAAAAGACAGGCCTAGAGTTTTCAGGGAACGTATTCGATATCTT
GTGCAGAGAATTCGTTTACCAAGATCGTACCATCTCTATGGTTATGCGCT
TCCTGCGACTGCTTTTTACTTTACACTTCTATCGTGAGCCCTTGGCAGCA
GTTTTTTGTCAAGTTCTCGAAGAGTGCGCCGCTCAAACTCACGAAGAAAC
AGACCTAGGAATTCGAAGAAAGTTGTCGAAGTTGCTAAAGAAAGAACATT
TAATAATAGTGGAGAAAAAATGCATTCAGGATGAAAGCCACGCCAACGGC
CTTCCGATACAAGAAGCTAATCGTAACCTGTGCTTCAAAGCTTGCCAACA
ACTATGGAAACGCAGGACAAGACTTGAGACTCTTCAACGACTGGTCCTTC
ACGTGTCTGATATCACGAGCAGAGGAAAGTCTGGTATCGCAGCAAGCAGG
GATCGTTCTGATCCTCTTGAGGGCACGGAGCCTTTGGATGATCTGCACAT
CAACGTGTTTAGAGCGTTCTTGGTAGACGAAGACAGTGGTGAGGTCAAAT
ATGATCGCTTTACTCGCCCATTGTTTGAAACGATATCAAACGCGGGCAAG
CCAATGATGCGAAGAATACTTACGATGACTATACAAGAGATATCGCGTTC
TTTAGAAACTACGAATGATGAAGAATTGAGCTCACTTTGGCGAGAGGCAG
AGAAAATTCTGAAGGAGCTGAACAGTATATCGGCAGCGCAAACCCATCCG
TCGCAAAGAAAACGGACGCAGCGAACCACTTCAGCAAGATATGCAAAAGG
AGGTAGTGCCGCCAGAAACCGTAGGGCGCAGATTATTACGGCTATGGCGA
ATGAAGTGCAAAGCTCTGATCCTTTGGTACCAATTCGGAAAAAGCTGGAG
TCCGTCATTCTGAGAATGTCCAAACTAATCAAGTCTTTGAAAGATATCCC
CCTGCACCAAACAATACTTTTGTCCGATATTGCCGAGTTGCAATCCTTCT
GTGGGGGAATGGGAGGTCTAGTTGAGCCAAGATCTTCGTTGTTCACGGCA
ATGCGACAACCGCAGAGGATAATTGACACTATTTCGCCTTGTTCCCATCC
CGATACTGCAGTGGCATACAGAATTTTGGCCGAGGGTGGGCGGTTAGTCG
GTCTGTATGATTGGTATAACAGTTTTGCGTCCATTGTTGTTGCGGCTGCA
GCCAAGCAAAGTTGTGGGGGTGAGGTCAATATTTCCCAAGTCCGTCCAGC
CGAACTTCAATCTCGCTTTGCAAGAGCGTGTTCTGAATTGGAGGTACTAG
GTGTGATGAAGTATACAAATCGCAAGTCAGATCATGTTGCAAGACTCGTT
TTCGAATAA

protein sequence of Ggra9237.t1

>Ggra9237.t1 ID=Ggra9237.t1|Name=Ggra9237.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=553bp
MLQELESIDFSKQTIISVDDVDRLPESVIRDMVYKCGKVRECEEAQLLAK
RGIPPITLVLGVGVSDARFHSALGIEEAALILPTMISMPTPAECFRGIAN
VIQKTGLEFSGNVFDILCREFVYQDRTISMVMRFLRLLFTLHFYREPLAA
VFCQVLEECAAQTHEETDLGIRRKLSKLLKKEHLIIVEKKCIQDESHANG
LPIQEANRNLCFKACQQLWKRRTRLETLQRLVLHVSDITSRGKSGIAASR
DRSDPLEGTEPLDDLHINVFRAFLVDEDSGEVKYDRFTRPLFETISNAGK
PMMRRILTMTIQEISRSLETTNDEELSSLWREAEKILKELNSISAAQTHP
SQRKRTQRTTSARYAKGGSAARNRRAQIITAMANEVQSSDPLVPIRKKLE
SVILRMSKLIKSLKDIPLHQTILLSDIAELQSFCGGMGGLVEPRSSLFTA
MRQPQRIIDTISPCSHPDTAVAYRILAEGGRLVGLYDWYNSFASIVVAAA
AKQSCGGEVNISQVRPAELQSRFARACSELEVLGVMKYTNRKSDHVARLV
FE*

mRNA from alignment at tig00000075_pilon:462407..464065+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9237.t1 ID=Ggra9237.t1|Name=Ggra9237.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1659bp|location=Sequence derived from alignment at tig00000075_pilon:462407..464065+ (Gracilaria gracilis GNS1m male)
ATGCTACAAGAGTTGGAGTCCATTGATTTCTCAAAGCAAACAATAATTTC
TGTGGACGATGTTGACAGACTACCAGAGTCCGTGATCCGTGATATGGTCT
ACAAATGTGGAAAGGTCCGTGAGTGTGAAGAAGCCCAACTTCTTGCGAAA
AGAGGCATTCCTCCTATCACTCTCGTATTAGGCGTGGGAGTATCAGACGC
TCGATTTCACTCTGCCCTTGGAATTGAAGAAGCTGCTCTAATTCTTCCAA
CCATGATCTCGATGCCCACCCCTGCAGAATGCTTTCGGGGTATTGCGAAC
GTCATACAAAAGACAGGCCTAGAGTTTTCAGGGAACGTATTCGATATCTT
GTGCAGAGAATTCGTTTACCAAGATCGTACCATCTCTATGGTTATGCGCT
TCCTGCGACTGCTTTTTACTTTACACTTCTATCGTGAGCCCTTGGCAGCA
GTTTTTTGTCAAGTTCTCGAAGAGTGCGCCGCTCAAACTCACGAAGAAAC
AGACCTAGGAATTCGAAGAAAGTTGTCGAAGTTGCTAAAGAAAGAACATT
TAATAATAGTGGAGAAAAAATGCATTCAGGATGAAAGCCACGCCAACGGC
CTTCCGATACAAGAAGCTAATCGTAACCTGTGCTTCAAAGCTTGCCAACA
ACTATGGAAACGCAGGACAAGACTTGAGACTCTTCAACGACTGGTCCTTC
ACGTGTCTGATATCACGAGCAGAGGAAAGTCTGGTATCGCAGCAAGCAGG
GATCGTTCTGATCCTCTTGAGGGCACGGAGCCTTTGGATGATCTGCACAT
CAACGTGTTTAGAGCGTTCTTGGTAGACGAAGACAGTGGTGAGGTCAAAT
ATGATCGCTTTACTCGCCCATTGTTTGAAACGATATCAAACGCGGGCAAG
CCAATGATGCGAAGAATACTTACGATGACTATACAAGAGATATCGCGTTC
TTTAGAAACTACGAATGATGAAGAATTGAGCTCACTTTGGCGAGAGGCAG
AGAAAATTCTGAAGGAGCTGAACAGTATATCGGCAGCGCAAACCCATCCG
TCGCAAAGAAAACGGACGCAGCGAACCACTTCAGCAAGATATGCAAAAGG
AGGTAGTGCCGCCAGAAACCGTAGGGCGCAGATTATTACGGCTATGGCGA
ATGAAGTGCAAAGCTCTGATCCTTTGGTACCAATTCGGAAAAAGCTGGAG
TCCGTCATTCTGAGAATGTCCAAACTAATCAAGTCTTTGAAAGATATCCC
CCTGCACCAAACAATACTTTTGTCCGATATTGCCGAGTTGCAATCCTTCT
GTGGGGGAATGGGAGGTCTAGTTGAGCCAAGATCTTCGTTGTTCACGGCA
ATGCGACAACCGCAGAGGATAATTGACACTATTTCGCCTTGTTCCCATCC
CGATACTGCAGTGGCATACAGAATTTTGGCCGAGGGTGGGCGGTTAGTCG
GTCTGTATGATTGGTATAACAGTTTTGCGTCCATTGTTGTTGCGGCTGCA
GCCAAGCAAAGTTGTGGGGGTGAGGTCAATATTTCCCAAGTCCGTCCAGC
CGAACTTCAATCTCGCTTTGCAAGAGCGTGTTCTGAATTGGAGGTACTAG
GTGTGATGAAGTATACAAATCGCAAGTCAGATCATGTTGCAAGACTCGTT
TTCGAATAA

Coding sequence (CDS) from alignment at tig00000075_pilon:462407..464065+

>Ggra9237.t1 ID=Ggra9237.t1|Name=Ggra9237.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1659bp|location=Sequence derived from alignment at tig00000075_pilon:462407..464065+ (Gracilaria gracilis GNS1m male)
ATGCTACAAGAGTTGGAGTCCATTGATTTCTCAAAGCAAACAATAATTTC
TGTGGACGATGTTGACAGACTACCAGAGTCCGTGATCCGTGATATGGTCT
ACAAATGTGGAAAGGTCCGTGAGTGTGAAGAAGCCCAACTTCTTGCGAAA
AGAGGCATTCCTCCTATCACTCTCGTATTAGGCGTGGGAGTATCAGACGC
TCGATTTCACTCTGCCCTTGGAATTGAAGAAGCTGCTCTAATTCTTCCAA
CCATGATCTCGATGCCCACCCCTGCAGAATGCTTTCGGGGTATTGCGAAC
GTCATACAAAAGACAGGCCTAGAGTTTTCAGGGAACGTATTCGATATCTT
GTGCAGAGAATTCGTTTACCAAGATCGTACCATCTCTATGGTTATGCGCT
TCCTGCGACTGCTTTTTACTTTACACTTCTATCGTGAGCCCTTGGCAGCA
GTTTTTTGTCAAGTTCTCGAAGAGTGCGCCGCTCAAACTCACGAAGAAAC
AGACCTAGGAATTCGAAGAAAGTTGTCGAAGTTGCTAAAGAAAGAACATT
TAATAATAGTGGAGAAAAAATGCATTCAGGATGAAAGCCACGCCAACGGC
CTTCCGATACAAGAAGCTAATCGTAACCTGTGCTTCAAAGCTTGCCAACA
ACTATGGAAACGCAGGACAAGACTTGAGACTCTTCAACGACTGGTCCTTC
ACGTGTCTGATATCACGAGCAGAGGAAAGTCTGGTATCGCAGCAAGCAGG
GATCGTTCTGATCCTCTTGAGGGCACGGAGCCTTTGGATGATCTGCACAT
CAACGTGTTTAGAGCGTTCTTGGTAGACGAAGACAGTGGTGAGGTCAAAT
ATGATCGCTTTACTCGCCCATTGTTTGAAACGATATCAAACGCGGGCAAG
CCAATGATGCGAAGAATACTTACGATGACTATACAAGAGATATCGCGTTC
TTTAGAAACTACGAATGATGAAGAATTGAGCTCACTTTGGCGAGAGGCAG
AGAAAATTCTGAAGGAGCTGAACAGTATATCGGCAGCGCAAACCCATCCG
TCGCAAAGAAAACGGACGCAGCGAACCACTTCAGCAAGATATGCAAAAGG
AGGTAGTGCCGCCAGAAACCGTAGGGCGCAGATTATTACGGCTATGGCGA
ATGAAGTGCAAAGCTCTGATCCTTTGGTACCAATTCGGAAAAAGCTGGAG
TCCGTCATTCTGAGAATGTCCAAACTAATCAAGTCTTTGAAAGATATCCC
CCTGCACCAAACAATACTTTTGTCCGATATTGCCGAGTTGCAATCCTTCT
GTGGGGGAATGGGAGGTCTAGTTGAGCCAAGATCTTCGTTGTTCACGGCA
ATGCGACAACCGCAGAGGATAATTGACACTATTTCGCCTTGTTCCCATCC
CGATACTGCAGTGGCATACAGAATTTTGGCCGAGGGTGGGCGGTTAGTCG
GTCTGTATGATTGGTATAACAGTTTTGCGTCCATTGTTGTTGCGGCTGCA
GCCAAGCAAAGTTGTGGGGGTGAGGTCAATATTTCCCAAGTCCGTCCAGC
CGAACTTCAATCTCGCTTTGCAAGAGCGTGTTCTGAATTGGAGGTACTAG
GTGTGATGAAGTATACAAATCGCAAGTCAGATCATGTTGCAAGACTCGTT
TTCGAATAA