Ggra9277.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9277.t1
Unique Name	Ggra9277.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	681

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:737375..739417 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9277	Ggra9277	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 737375..739417 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9277.t1.start1	Ggra9277.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 737375..737377 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9277.t1.CDS1	Ggra9277.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 737375..739417 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9277.t1.exon1	Ggra9277.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 737375..739417 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9277.t1.stop1	Ggra9277.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 739415..739417 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9277.t1	Ggra9277.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 737375..739417 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:737375..739417+
coding sequence from alignment at tig00000075_pilon:737375..739417+

mRNA sequence

>Ggra9277.t1 ID=Ggra9277.t1|Name=Ggra9277.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=681bp
MFASLWNIRRALRGLAALRDIRLVWEQANIREFELCFDDWIVPEPKRCTI
PNACLPKLDVVDILVNHSLIDNDWPGEAPQTEYRINPLRRSKSMTKTNYF
PDVRAVDSDLLQKQCILILWCLWMSHGKDERYDEDTLQVNESGSIQRKMV
KCLLEKFCSPSKSNISQTSMCVVCKDVPGKLIIAKTCTWCRLRPLITRAV
GVHKSTGDSAALVEFELVQQLSNLPSKVRGALRPVDAGRILHLYDRHYEL
EEKNRTAANREGVFVEFLCPASTMGLVLGLSKKYDDTLRKWLRSAENEEN
LILTTDSINEKYLAFVVLLAVQGELKKDIGHGPDGEWPRERHLQQLGRIV
RSCKVLLHSGPEAKPLDVVLEGNEEKWNSLISSVIGADWTEDSKARMWND
AVISELQLLSRMFATPLPIENADRYVFSPSCVSFRFGVIGNDTVSFSDGA
YQSVRAAKTIRTNANSWDKKHDERNILWRSRSVSLREGAISLEARFQDLS
AGRFWKAGLCFRFKSWTNQKWPRTPNDGIDFVISVYDDDLQSPTFRTEVL
NLFHFAYFTNAKPWTGKKKYRFPFEIRHMLQDKDVVWNMTNAPAAAETHS
SWRIFECSNIPTSGERSEIKLSLESKLRNDTASFPDELELGSFYVAPTSA
QSLETQISYTTGQDLCHTISAIRKETVNQV*

spliced messenger RNA

>Ggra9277.t1 ID=Ggra9277.t1|Name=Ggra9277.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2043bp|location=Sequence derived from alignment at tig00000075_pilon:737375..739417+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGCTTCACTTTGGAATATTCGTCGAGCACTGCGCGGCTTAGCAGC
TCTGCGGGATATTCGACTTGTATGGGAGCAGGCCAATATACGGGAATTTG
AGTTATGCTTTGATGACTGGATTGTTCCTGAACCAAAAAGATGTACGATA
CCCAACGCGTGTCTCCCTAAACTTGATGTCGTCGATATCCTTGTTAACCA
CAGCCTTATCGACAACGACTGGCCTGGGGAAGCACCACAAACTGAATATC
GAATAAACCCGTTGAGAAGATCTAAAAGTATGACAAAAACAAATTACTTC
CCAGATGTGCGAGCTGTTGATTCAGATCTGCTCCAAAAGCAGTGCATTCT
TATATTATGGTGTTTATGGATGTCACATGGAAAAGACGAACGCTATGATG
AAGACACACTGCAAGTGAACGAATCTGGTTCAATCCAACGAAAAATGGTA
AAATGCTTGCTCGAGAAGTTTTGTAGCCCGTCAAAGTCGAACATATCCCA
AACATCGATGTGCGTTGTATGCAAAGATGTTCCAGGGAAGCTTATAATTG
CCAAGACTTGTACATGGTGTAGACTGCGTCCTCTTATAACAAGAGCGGTA
GGCGTACACAAGTCGACAGGGGACTCAGCAGCGCTTGTTGAGTTCGAGCT
GGTTCAGCAGCTTTCGAATCTTCCGTCAAAGGTTCGGGGTGCTTTGAGAC
CAGTAGATGCTGGTAGAATACTACACCTTTACGATCGTCACTATGAATTA
GAAGAAAAGAATCGTACAGCCGCTAATCGTGAAGGAGTCTTCGTAGAATT
CTTGTGTCCAGCGTCGACGATGGGGCTCGTTCTTGGACTTTCGAAAAAAT
ACGATGACACTCTTAGGAAGTGGTTGCGATCAGCTGAAAACGAAGAAAAT
CTTATTCTAACCACTGACAGTATCAATGAGAAATATCTTGCATTTGTTGT
CCTTCTCGCCGTCCAGGGAGAACTGAAGAAAGACATAGGTCATGGCCCTG
ACGGCGAATGGCCTCGTGAAAGACATCTGCAACAGTTAGGCCGAATCGTA
CGGAGCTGTAAAGTTCTTCTACATTCAGGGCCTGAAGCTAAACCATTGGA
TGTAGTTCTTGAGGGTAATGAAGAGAAATGGAATAGTCTGATAAGCAGCG
TCATTGGAGCGGACTGGACAGAAGATTCTAAGGCCAGGATGTGGAACGAT
GCAGTAATATCGGAGTTGCAACTTCTCTCCCGGATGTTTGCTACCCCATT
ACCAATTGAGAACGCAGACCGGTATGTGTTTTCTCCATCTTGTGTGAGTT
TTCGTTTTGGAGTCATCGGAAATGACACAGTTAGTTTCTCTGACGGTGCT
TATCAGTCCGTACGAGCAGCAAAAACCATCAGAACGAACGCAAACTCCTG
GGACAAAAAGCATGATGAAAGAAATATTTTGTGGCGTTCCCGATCAGTTT
CTTTAAGGGAAGGGGCTATTTCTCTGGAGGCAAGATTTCAAGACCTTTCT
GCGGGTCGCTTCTGGAAAGCAGGGCTTTGCTTTCGATTTAAGTCATGGAC
AAACCAAAAGTGGCCAAGAACACCAAATGATGGCATTGATTTTGTCATTT
CCGTCTATGATGATGACCTGCAGTCTCCTACGTTTAGAACAGAAGTACTG
AACCTGTTTCACTTCGCGTACTTTACGAATGCAAAACCTTGGACGGGAAA
GAAGAAGTACAGGTTCCCTTTTGAAATTAGGCACATGCTCCAGGATAAAG
ATGTGGTTTGGAATATGACAAATGCACCAGCAGCCGCAGAAACCCATTCT
TCATGGCGCATATTTGAGTGCTCAAACATTCCGACATCAGGGGAACGAAG
CGAGATAAAACTGTCTTTGGAAAGCAAACTTCGCAACGATACTGCCTCTT
TTCCAGATGAACTTGAATTAGGTTCATTCTATGTAGCCCCAACATCTGCA
CAGAGCCTGGAAACGCAAATTTCTTACACAACAGGACAAGATTTGTGTCA
CACTATCAGTGCCATCAGAAAGGAGACTGTGAATCAAGTTTGA

protein sequence of Ggra9277.t1

>Ggra9277.t1 ID=Ggra9277.t1|Name=Ggra9277.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=681bp
MFASLWNIRRALRGLAALRDIRLVWEQANIREFELCFDDWIVPEPKRCTI
PNACLPKLDVVDILVNHSLIDNDWPGEAPQTEYRINPLRRSKSMTKTNYF
PDVRAVDSDLLQKQCILILWCLWMSHGKDERYDEDTLQVNESGSIQRKMV
KCLLEKFCSPSKSNISQTSMCVVCKDVPGKLIIAKTCTWCRLRPLITRAV
GVHKSTGDSAALVEFELVQQLSNLPSKVRGALRPVDAGRILHLYDRHYEL
EEKNRTAANREGVFVEFLCPASTMGLVLGLSKKYDDTLRKWLRSAENEEN
LILTTDSINEKYLAFVVLLAVQGELKKDIGHGPDGEWPRERHLQQLGRIV
RSCKVLLHSGPEAKPLDVVLEGNEEKWNSLISSVIGADWTEDSKARMWND
AVISELQLLSRMFATPLPIENADRYVFSPSCVSFRFGVIGNDTVSFSDGA
YQSVRAAKTIRTNANSWDKKHDERNILWRSRSVSLREGAISLEARFQDLS
AGRFWKAGLCFRFKSWTNQKWPRTPNDGIDFVISVYDDDLQSPTFRTEVL
NLFHFAYFTNAKPWTGKKKYRFPFEIRHMLQDKDVVWNMTNAPAAAETHS
SWRIFECSNIPTSGERSEIKLSLESKLRNDTASFPDELELGSFYVAPTSA
QSLETQISYTTGQDLCHTISAIRKETVNQV*

mRNA from alignment at tig00000075_pilon:737375..739417+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9277.t1 ID=Ggra9277.t1|Name=Ggra9277.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2043bp|location=Sequence derived from alignment at tig00000075_pilon:737375..739417+ (Gracilaria gracilis GNS1m male)
ATGTTTGCTTCACTTTGGAATATTCGTCGAGCACTGCGCGGCTTAGCAGC
TCTGCGGGATATTCGACTTGTATGGGAGCAGGCCAATATACGGGAATTTG
AGTTATGCTTTGATGACTGGATTGTTCCTGAACCAAAAAGATGTACGATA
CCCAACGCGTGTCTCCCTAAACTTGATGTCGTCGATATCCTTGTTAACCA
CAGCCTTATCGACAACGACTGGCCTGGGGAAGCACCACAAACTGAATATC
GAATAAACCCGTTGAGAAGATCTAAAAGTATGACAAAAACAAATTACTTC
CCAGATGTGCGAGCTGTTGATTCAGATCTGCTCCAAAAGCAGTGCATTCT
TATATTATGGTGTTTATGGATGTCACATGGAAAAGACGAACGCTATGATG
AAGACACACTGCAAGTGAACGAATCTGGTTCAATCCAACGAAAAATGGTA
AAATGCTTGCTCGAGAAGTTTTGTAGCCCGTCAAAGTCGAACATATCCCA
AACATCGATGTGCGTTGTATGCAAAGATGTTCCAGGGAAGCTTATAATTG
CCAAGACTTGTACATGGTGTAGACTGCGTCCTCTTATAACAAGAGCGGTA
GGCGTACACAAGTCGACAGGGGACTCAGCAGCGCTTGTTGAGTTCGAGCT
GGTTCAGCAGCTTTCGAATCTTCCGTCAAAGGTTCGGGGTGCTTTGAGAC
CAGTAGATGCTGGTAGAATACTACACCTTTACGATCGTCACTATGAATTA
GAAGAAAAGAATCGTACAGCCGCTAATCGTGAAGGAGTCTTCGTAGAATT
CTTGTGTCCAGCGTCGACGATGGGGCTCGTTCTTGGACTTTCGAAAAAAT
ACGATGACACTCTTAGGAAGTGGTTGCGATCAGCTGAAAACGAAGAAAAT
CTTATTCTAACCACTGACAGTATCAATGAGAAATATCTTGCATTTGTTGT
CCTTCTCGCCGTCCAGGGAGAACTGAAGAAAGACATAGGTCATGGCCCTG
ACGGCGAATGGCCTCGTGAAAGACATCTGCAACAGTTAGGCCGAATCGTA
CGGAGCTGTAAAGTTCTTCTACATTCAGGGCCTGAAGCTAAACCATTGGA
TGTAGTTCTTGAGGGTAATGAAGAGAAATGGAATAGTCTGATAAGCAGCG
TCATTGGAGCGGACTGGACAGAAGATTCTAAGGCCAGGATGTGGAACGAT
GCAGTAATATCGGAGTTGCAACTTCTCTCCCGGATGTTTGCTACCCCATT
ACCAATTGAGAACGCAGACCGGTATGTGTTTTCTCCATCTTGTGTGAGTT
TTCGTTTTGGAGTCATCGGAAATGACACAGTTAGTTTCTCTGACGGTGCT
TATCAGTCCGTACGAGCAGCAAAAACCATCAGAACGAACGCAAACTCCTG
GGACAAAAAGCATGATGAAAGAAATATTTTGTGGCGTTCCCGATCAGTTT
CTTTAAGGGAAGGGGCTATTTCTCTGGAGGCAAGATTTCAAGACCTTTCT
GCGGGTCGCTTCTGGAAAGCAGGGCTTTGCTTTCGATTTAAGTCATGGAC
AAACCAAAAGTGGCCAAGAACACCAAATGATGGCATTGATTTTGTCATTT
CCGTCTATGATGATGACCTGCAGTCTCCTACGTTTAGAACAGAAGTACTG
AACCTGTTTCACTTCGCGTACTTTACGAATGCAAAACCTTGGACGGGAAA
GAAGAAGTACAGGTTCCCTTTTGAAATTAGGCACATGCTCCAGGATAAAG
ATGTGGTTTGGAATATGACAAATGCACCAGCAGCCGCAGAAACCCATTCT
TCATGGCGCATATTTGAGTGCTCAAACATTCCGACATCAGGGGAACGAAG
CGAGATAAAACTGTCTTTGGAAAGCAAACTTCGCAACGATACTGCCTCTT
TTCCAGATGAACTTGAATTAGGTTCATTCTATGTAGCCCCAACATCTGCA
CAGAGCCTGGAAACGCAAATTTCTTACACAACAGGACAAGATTTGTGTCA
CACTATCAGTGCCATCAGAAAGGAGACTGTGAATCAAGTTTGA

Coding sequence (CDS) from alignment at tig00000075_pilon:737375..739417+

>Ggra9277.t1 ID=Ggra9277.t1|Name=Ggra9277.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2043bp|location=Sequence derived from alignment at tig00000075_pilon:737375..739417+ (Gracilaria gracilis GNS1m male)
ATGTTTGCTTCACTTTGGAATATTCGTCGAGCACTGCGCGGCTTAGCAGC
TCTGCGGGATATTCGACTTGTATGGGAGCAGGCCAATATACGGGAATTTG
AGTTATGCTTTGATGACTGGATTGTTCCTGAACCAAAAAGATGTACGATA
CCCAACGCGTGTCTCCCTAAACTTGATGTCGTCGATATCCTTGTTAACCA
CAGCCTTATCGACAACGACTGGCCTGGGGAAGCACCACAAACTGAATATC
GAATAAACCCGTTGAGAAGATCTAAAAGTATGACAAAAACAAATTACTTC
CCAGATGTGCGAGCTGTTGATTCAGATCTGCTCCAAAAGCAGTGCATTCT
TATATTATGGTGTTTATGGATGTCACATGGAAAAGACGAACGCTATGATG
AAGACACACTGCAAGTGAACGAATCTGGTTCAATCCAACGAAAAATGGTA
AAATGCTTGCTCGAGAAGTTTTGTAGCCCGTCAAAGTCGAACATATCCCA
AACATCGATGTGCGTTGTATGCAAAGATGTTCCAGGGAAGCTTATAATTG
CCAAGACTTGTACATGGTGTAGACTGCGTCCTCTTATAACAAGAGCGGTA
GGCGTACACAAGTCGACAGGGGACTCAGCAGCGCTTGTTGAGTTCGAGCT
GGTTCAGCAGCTTTCGAATCTTCCGTCAAAGGTTCGGGGTGCTTTGAGAC
CAGTAGATGCTGGTAGAATACTACACCTTTACGATCGTCACTATGAATTA
GAAGAAAAGAATCGTACAGCCGCTAATCGTGAAGGAGTCTTCGTAGAATT
CTTGTGTCCAGCGTCGACGATGGGGCTCGTTCTTGGACTTTCGAAAAAAT
ACGATGACACTCTTAGGAAGTGGTTGCGATCAGCTGAAAACGAAGAAAAT
CTTATTCTAACCACTGACAGTATCAATGAGAAATATCTTGCATTTGTTGT
CCTTCTCGCCGTCCAGGGAGAACTGAAGAAAGACATAGGTCATGGCCCTG
ACGGCGAATGGCCTCGTGAAAGACATCTGCAACAGTTAGGCCGAATCGTA
CGGAGCTGTAAAGTTCTTCTACATTCAGGGCCTGAAGCTAAACCATTGGA
TGTAGTTCTTGAGGGTAATGAAGAGAAATGGAATAGTCTGATAAGCAGCG
TCATTGGAGCGGACTGGACAGAAGATTCTAAGGCCAGGATGTGGAACGAT
GCAGTAATATCGGAGTTGCAACTTCTCTCCCGGATGTTTGCTACCCCATT
ACCAATTGAGAACGCAGACCGGTATGTGTTTTCTCCATCTTGTGTGAGTT
TTCGTTTTGGAGTCATCGGAAATGACACAGTTAGTTTCTCTGACGGTGCT
TATCAGTCCGTACGAGCAGCAAAAACCATCAGAACGAACGCAAACTCCTG
GGACAAAAAGCATGATGAAAGAAATATTTTGTGGCGTTCCCGATCAGTTT
CTTTAAGGGAAGGGGCTATTTCTCTGGAGGCAAGATTTCAAGACCTTTCT
GCGGGTCGCTTCTGGAAAGCAGGGCTTTGCTTTCGATTTAAGTCATGGAC
AAACCAAAAGTGGCCAAGAACACCAAATGATGGCATTGATTTTGTCATTT
CCGTCTATGATGATGACCTGCAGTCTCCTACGTTTAGAACAGAAGTACTG
AACCTGTTTCACTTCGCGTACTTTACGAATGCAAAACCTTGGACGGGAAA
GAAGAAGTACAGGTTCCCTTTTGAAATTAGGCACATGCTCCAGGATAAAG
ATGTGGTTTGGAATATGACAAATGCACCAGCAGCCGCAGAAACCCATTCT
TCATGGCGCATATTTGAGTGCTCAAACATTCCGACATCAGGGGAACGAAG
CGAGATAAAACTGTCTTTGGAAAGCAAACTTCGCAACGATACTGCCTCTT
TTCCAGATGAACTTGAATTAGGTTCATTCTATGTAGCCCCAACATCTGCA
CAGAGCCTGGAAACGCAAATTTCTTACACAACAGGACAAGATTTGTGTCA
CACTATCAGTGCCATCAGAAAGGAGACTGTGAATCAAGTTTGA