Ggra9225.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9225.t1
Unique NameGgra9225.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length74
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:423588..423999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5833.PFL1830w
PFAMsubiquitin
Max annot lvl422676|Aconoidasida
KEGG koko:K13113
KEGG Pathwayko04212,map04212
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0019538,GO:0031386,GO:0034641,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564
Evalue9.14e-35
EggNOG OGsKOG3493@1|root,KOG3493@2759|Eukaryota,3YAMA@5794|Apicomplexa,3KCH3@422676|Aconoidasida,3Z04P@5819|Haemosporida
DescriptionUbiquitin-like protein
COG categoryO
BRITEko00000,ko00001,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9225Ggra9225Gracilaria gracilis GNS1m malegenetig00000075_pilon 423588..423999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9225.t1Ggra9225.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 423588..423999 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9225.t1.stop1Ggra9225.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 423588..423590 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9225.t1.CDS1Ggra9225.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 423588..423636 -
Ggra9225.t1.CDS2Ggra9225.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 423748..423889 -
Ggra9225.t1.CDS3Ggra9225.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000075_pilon 423969..423999 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9225.t1.exon1Ggra9225.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 423588..423636 -
Ggra9225.t1.exon2Ggra9225.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 423748..423889 -
Ggra9225.t1.exon3Ggra9225.t1.exon3Gracilaria gracilis GNS1m maleexontig00000075_pilon 423969..423999 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9225.t1.intron1Ggra9225.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 423637..423747 -
Ggra9225.t1.intron2Ggra9225.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000075_pilon 423890..423968 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9225.t1.start1Ggra9225.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 423997..423999 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9225.t1 ID=Ggra9225.t1|Name=Ggra9225.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=74bp
MIEVILNDRLGQKVRVKCEPDDTIGQLKLLVAALTGTRAEKLRIQRANIV
YKDHITLADYEIKDGQGLELFYN*
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spliced messenger RNA

>Ggra9225.t1 ID=Ggra9225.t1|Name=Ggra9225.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=222bp|location=Sequence derived from alignment at tig00000075_pilon:423588..423999- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGAAGTCATACTTAACGACCGACTCGGACAGAAAGTCCGCGTCAA
GTGTGAGCCCGATGATACCATTGGGCAGCTTAAGCTATTGGTTGCCGCTC
TAACCGGAACACGGGCAGAGAAACTCCGAATTCAAAGGGCGAATATTGTA
TACAAAGACCACATAACATTGGCTGATTATGAAATTAAGGACGGTCAAGG
ACTTGAATTGTTCTATAACTAG
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protein sequence of Ggra9225.t1

>Ggra9225.t1 ID=Ggra9225.t1|Name=Ggra9225.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=74bp
MIEVILNDRLGQKVRVKCEPDDTIGQLKLLVAALTGTRAEKLRIQRANIV
YKDHITLADYEIKDGQGLELFYN*
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mRNA from alignment at tig00000075_pilon:423588..423999-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9225.t1 ID=Ggra9225.t1|Name=Ggra9225.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=412bp|location=Sequence derived from alignment at tig00000075_pilon:423588..423999- (Gracilaria gracilis GNS1m male)
ATGATTGAAGTCATACTTAACGACCGACTCGGTATGTGACGAATTCAGGA
AAGCCTCCATTTTCATGATTTTGGCTAACATTGAATGTCTCACTCGACCT
GTCTCTACAGGACAGAAAGTCCGCGTCAAGTGTGAGCCCGATGATACCAT
TGGGCAGCTTAAGCTATTGGTTGCCGCTCTAACCGGAACACGGGCAGAGA
AACTCCGAATTCAAAGGGCGAATATTGTATACAAAGACCACATAACATTG
GCGTAAGTTTGAAGGTGCCCCATGCTTTTCATTCATTAAGGATTTTGGCG
ATCTTGTTGGCTTCATGAAACCAAGAACTAACGACTTTCGTGGAAACTGG
TCTGCAACAACAGTGATTATGAAATTAAGGACGGTCAAGGACTTGAATTG
TTCTATAACTAG
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Coding sequence (CDS) from alignment at tig00000075_pilon:423588..423999-

>Ggra9225.t1 ID=Ggra9225.t1|Name=Ggra9225.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=222bp|location=Sequence derived from alignment at tig00000075_pilon:423588..423999- (Gracilaria gracilis GNS1m male)
ATGATTGAAGTCATACTTAACGACCGACTCGGACAGAAAGTCCGCGTCAA
GTGTGAGCCCGATGATACCATTGGGCAGCTTAAGCTATTGGTTGCCGCTC
TAACCGGAACACGGGCAGAGAAACTCCGAATTCAAAGGGCGAATATTGTA
TACAAAGACCACATAACATTGGCTGATTATGAAATTAAGGACGGTCAAGG
ACTTGAATTGTTCTATAACTAG
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