Ggra9186.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9186.t1
Unique NameGgra9186.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length680
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:329988..332128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_02408T0
Preferred nameDDX21
PFAMsDEAD,GUCT,Helicase_C
Max annot lvl33154|Opisthokonta
KEGG koko:K13183,ko:K16911
KEGG Pathwayko01110,map01110
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003725,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005886,GO:0006139,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009615,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010501,GO:0010604,GO:0010628,GO:0014070,GO:0016020,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017069,GO:0017111,GO:0018130,GO:0019222,GO:0019438,GO:0019843,GO:0030515,GO:0031974,GO:0031981,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0035198,GO:0040029,GO:0042221,GO:0042623,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043330,GO:0043331,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0050789,GO:0050896,GO:0051704,GO:0051707,GO:0060255,GO:0061980,GO:0065007,GO:0070013,GO:0070035,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:0097322,GO:0097659,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901698
Evalue1.24e-132
EggNOG OGsCOG0513@1|root,KOG0331@2759|Eukaryota,38HSV@33154|Opisthokonta
EC3.6.4.13
Description7SK snRNA binding
COG categoryA
BRITEko00000,ko01000,ko03009,ko03036,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9186Ggra9186Gracilaria gracilis GNS1m malegenetig00000075_pilon 329988..332128 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9186.t1Ggra9186.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 329988..332128 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9186.t1.stop1Ggra9186.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 329988..329990 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9186.t1.CDS1Ggra9186.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 329988..330001 -
Ggra9186.t1.CDS2Ggra9186.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 330103..332128 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9186.t1.exon1Ggra9186.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 329988..330001 -
Ggra9186.t1.exon2Ggra9186.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 330103..332128 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9186.t1.intron1Ggra9186.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 330002..330102 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9186.t1.start1Ggra9186.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 332126..332128 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9186.t1 ID=Ggra9186.t1|Name=Ggra9186.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=680bp
MGVEDLEKHDMASPVLEVEKQLKSDTNKSKSDRKEKKKDKKEKRVKKDKK
DKKDKKDKKERKDKKEKKEKKRKRDTSPSSSEDENSSPSSPDHVLDATAL
YDEEQHPSKKAKLEENTGPRLGVEPEMDDIAEDENIGLGEQVKPQVDSND
VNAFGMSQITVNTLKKKDINSLFEIQSATYKLLRMERKDIIGRARTGSGK
TLAFVLPIIETLVADNMTRVRAHEKPLVLCLAPTRELAQQVHRDFEWIAG
GHRLSTTCFTGGTPKGPQKGELRRGVDVLVGTPGRIMDHLDDGALSLAGV
QFVVLDEADEMLSMGFQEDVERILSACTTSKMKQTLLFSATIPRWVKGLA
QKYMRADATVTVDTVSNEKNRTNSSITHLALACPPSERASTMADVARMYS
GANGKTLIFTDTKAEANELSEEKLLVGALGAVGLLHGDIPQSQRERTLAS
YREGRIRVLVATDVAARGLDIKAVDLVLQTHPPSNYETYIHRSGRTGRAG
KSGTCLTFYSLKEKFLIGLIEHKAGIKFERGRPPQVSDLVRSSAADTAKL
MGAVHADNVALFREVARKVMRQFGDEEDAAERALAASLACMAGYNSERFK
SRSLLSGFEGYRAAVLTREQGFEHGGQAFSMVRRAVGEQWASKIRGTVLC
KDRRKAVFDVPDELAEEVCGRGGQLDAAA*
back to top

spliced messenger RNA

>Ggra9186.t1 ID=Ggra9186.t1|Name=Ggra9186.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2040bp|location=Sequence derived from alignment at tig00000075_pilon:329988..332128- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGTCGAAGATTTGGAGAAGCACGATATGGCTTCACCTGTACTCGA
AGTGGAAAAACAGCTCAAGTCCGATACCAACAAGTCCAAGTCTGACCGGA
AGGAAAAGAAGAAAGACAAGAAGGAGAAACGAGTCAAGAAGGACAAGAAG
GATAAGAAGGACAAGAAGGACAAGAAGGAGAGAAAGGACAAGAAGGAAAA
GAAGGAGAAGAAACGCAAACGAGACACCTCCCCGTCTTCGTCAGAGGACG
AAAACTCGAGTCCTTCCTCCCCGGACCACGTTCTCGATGCCACTGCCCTT
TATGATGAAGAACAGCACCCCAGCAAGAAGGCAAAGCTCGAAGAGAACAC
TGGCCCGCGCTTGGGCGTTGAACCTGAGATGGACGACATTGCTGAAGATG
AGAACATTGGCCTCGGAGAGCAAGTGAAACCCCAAGTTGATAGCAACGAC
GTCAACGCGTTTGGCATGTCACAAATCACAGTCAACACTCTGAAGAAAAA
GGACATCAACTCCCTTTTTGAAATCCAATCTGCAACATACAAGCTGCTAC
GCATGGAGCGCAAGGACATCATCGGCCGCGCTCGAACCGGTTCCGGGAAA
ACGCTCGCGTTTGTGTTGCCCATCATCGAAACACTGGTGGCGGACAACAT
GACGCGTGTGCGCGCACACGAGAAGCCCTTGGTGCTATGCTTGGCGCCGA
CTCGAGAACTTGCGCAACAGGTTCATCGAGATTTTGAGTGGATTGCAGGC
GGTCATCGACTCTCGACGACGTGCTTTACGGGCGGAACACCGAAGGGTCC
GCAGAAGGGAGAGTTGCGACGCGGCGTGGATGTGCTGGTTGGCACTCCCG
GCCGCATCATGGATCATCTGGATGACGGCGCTCTGTCGCTTGCTGGTGTA
CAGTTTGTGGTGTTGGATGAAGCAGATGAAATGCTTTCTATGGGCTTTCA
AGAAGACGTGGAACGCATTCTAAGCGCGTGTACCACGTCAAAGATGAAGC
AGACTCTGTTGTTCTCTGCCACAATTCCCAGATGGGTGAAGGGGCTCGCG
CAGAAGTACATGCGCGCGGACGCGACGGTGACGGTGGACACTGTGAGCAA
TGAGAAAAACCGGACCAACTCCAGCATCACGCATCTGGCACTCGCTTGTC
CGCCGTCGGAACGTGCGTCTACCATGGCGGACGTGGCAAGGATGTATAGC
GGGGCGAACGGAAAGACTTTAATCTTTACGGACACGAAGGCGGAAGCTAA
CGAACTGTCGGAGGAAAAGTTGCTGGTAGGCGCTCTGGGTGCTGTTGGGC
TGTTACACGGTGATATTCCACAAAGCCAGAGAGAACGCACGCTGGCGTCG
TACAGAGAAGGCAGGATCCGCGTGCTGGTGGCGACGGACGTGGCGGCAAG
AGGGTTGGATATCAAGGCGGTGGATCTGGTGTTACAGACACATCCTCCAA
GTAACTACGAGACGTATATCCATCGCTCTGGACGTACGGGGCGCGCTGGG
AAGAGCGGTACTTGTTTGACGTTCTACTCGCTCAAGGAAAAGTTCCTGAT
CGGGCTGATTGAACATAAGGCTGGCATCAAGTTTGAGCGCGGTCGACCAC
CGCAGGTGAGCGACTTGGTGCGCTCTAGCGCGGCGGATACGGCCAAATTG
ATGGGCGCGGTGCACGCGGATAACGTGGCGCTGTTCAGAGAGGTGGCGCG
AAAGGTGATGCGGCAGTTTGGGGATGAAGAGGACGCGGCGGAGAGAGCTT
TGGCGGCGTCGTTGGCTTGTATGGCGGGGTATAACAGCGAGCGGTTCAAG
TCGCGATCGCTGCTGTCCGGCTTCGAGGGGTATCGGGCGGCGGTGCTGAC
GCGTGAGCAGGGCTTTGAACATGGCGGGCAGGCGTTTAGCATGGTGAGAC
GCGCGGTGGGTGAGCAGTGGGCTTCCAAGATTCGCGGCACGGTGCTTTGT
AAGGATCGACGGAAGGCGGTGTTCGACGTGCCGGATGAGCTGGCGGAGGA
GGTTTGTGGCAGGGGTGGGCAGCTGGATGCAGCGGCGTAA
back to top

protein sequence of Ggra9186.t1

>Ggra9186.t1 ID=Ggra9186.t1|Name=Ggra9186.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=680bp
MGVEDLEKHDMASPVLEVEKQLKSDTNKSKSDRKEKKKDKKEKRVKKDKK
DKKDKKDKKERKDKKEKKEKKRKRDTSPSSSEDENSSPSSPDHVLDATAL
YDEEQHPSKKAKLEENTGPRLGVEPEMDDIAEDENIGLGEQVKPQVDSND
VNAFGMSQITVNTLKKKDINSLFEIQSATYKLLRMERKDIIGRARTGSGK
TLAFVLPIIETLVADNMTRVRAHEKPLVLCLAPTRELAQQVHRDFEWIAG
GHRLSTTCFTGGTPKGPQKGELRRGVDVLVGTPGRIMDHLDDGALSLAGV
QFVVLDEADEMLSMGFQEDVERILSACTTSKMKQTLLFSATIPRWVKGLA
QKYMRADATVTVDTVSNEKNRTNSSITHLALACPPSERASTMADVARMYS
GANGKTLIFTDTKAEANELSEEKLLVGALGAVGLLHGDIPQSQRERTLAS
YREGRIRVLVATDVAARGLDIKAVDLVLQTHPPSNYETYIHRSGRTGRAG
KSGTCLTFYSLKEKFLIGLIEHKAGIKFERGRPPQVSDLVRSSAADTAKL
MGAVHADNVALFREVARKVMRQFGDEEDAAERALAASLACMAGYNSERFK
SRSLLSGFEGYRAAVLTREQGFEHGGQAFSMVRRAVGEQWASKIRGTVLC
KDRRKAVFDVPDELAEEVCGRGGQLDAAA*
back to top

mRNA from alignment at tig00000075_pilon:329988..332128-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9186.t1 ID=Ggra9186.t1|Name=Ggra9186.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2141bp|location=Sequence derived from alignment at tig00000075_pilon:329988..332128- (Gracilaria gracilis GNS1m male)
ATGGGTGTCGAAGATTTGGAGAAGCACGATATGGCTTCACCTGTACTCGA
AGTGGAAAAACAGCTCAAGTCCGATACCAACAAGTCCAAGTCTGACCGGA
AGGAAAAGAAGAAAGACAAGAAGGAGAAACGAGTCAAGAAGGACAAGAAG
GATAAGAAGGACAAGAAGGACAAGAAGGAGAGAAAGGACAAGAAGGAAAA
GAAGGAGAAGAAACGCAAACGAGACACCTCCCCGTCTTCGTCAGAGGACG
AAAACTCGAGTCCTTCCTCCCCGGACCACGTTCTCGATGCCACTGCCCTT
TATGATGAAGAACAGCACCCCAGCAAGAAGGCAAAGCTCGAAGAGAACAC
TGGCCCGCGCTTGGGCGTTGAACCTGAGATGGACGACATTGCTGAAGATG
AGAACATTGGCCTCGGAGAGCAAGTGAAACCCCAAGTTGATAGCAACGAC
GTCAACGCGTTTGGCATGTCACAAATCACAGTCAACACTCTGAAGAAAAA
GGACATCAACTCCCTTTTTGAAATCCAATCTGCAACATACAAGCTGCTAC
GCATGGAGCGCAAGGACATCATCGGCCGCGCTCGAACCGGTTCCGGGAAA
ACGCTCGCGTTTGTGTTGCCCATCATCGAAACACTGGTGGCGGACAACAT
GACGCGTGTGCGCGCACACGAGAAGCCCTTGGTGCTATGCTTGGCGCCGA
CTCGAGAACTTGCGCAACAGGTTCATCGAGATTTTGAGTGGATTGCAGGC
GGTCATCGACTCTCGACGACGTGCTTTACGGGCGGAACACCGAAGGGTCC
GCAGAAGGGAGAGTTGCGACGCGGCGTGGATGTGCTGGTTGGCACTCCCG
GCCGCATCATGGATCATCTGGATGACGGCGCTCTGTCGCTTGCTGGTGTA
CAGTTTGTGGTGTTGGATGAAGCAGATGAAATGCTTTCTATGGGCTTTCA
AGAAGACGTGGAACGCATTCTAAGCGCGTGTACCACGTCAAAGATGAAGC
AGACTCTGTTGTTCTCTGCCACAATTCCCAGATGGGTGAAGGGGCTCGCG
CAGAAGTACATGCGCGCGGACGCGACGGTGACGGTGGACACTGTGAGCAA
TGAGAAAAACCGGACCAACTCCAGCATCACGCATCTGGCACTCGCTTGTC
CGCCGTCGGAACGTGCGTCTACCATGGCGGACGTGGCAAGGATGTATAGC
GGGGCGAACGGAAAGACTTTAATCTTTACGGACACGAAGGCGGAAGCTAA
CGAACTGTCGGAGGAAAAGTTGCTGGTAGGCGCTCTGGGTGCTGTTGGGC
TGTTACACGGTGATATTCCACAAAGCCAGAGAGAACGCACGCTGGCGTCG
TACAGAGAAGGCAGGATCCGCGTGCTGGTGGCGACGGACGTGGCGGCAAG
AGGGTTGGATATCAAGGCGGTGGATCTGGTGTTACAGACACATCCTCCAA
GTAACTACGAGACGTATATCCATCGCTCTGGACGTACGGGGCGCGCTGGG
AAGAGCGGTACTTGTTTGACGTTCTACTCGCTCAAGGAAAAGTTCCTGAT
CGGGCTGATTGAACATAAGGCTGGCATCAAGTTTGAGCGCGGTCGACCAC
CGCAGGTGAGCGACTTGGTGCGCTCTAGCGCGGCGGATACGGCCAAATTG
ATGGGCGCGGTGCACGCGGATAACGTGGCGCTGTTCAGAGAGGTGGCGCG
AAAGGTGATGCGGCAGTTTGGGGATGAAGAGGACGCGGCGGAGAGAGCTT
TGGCGGCGTCGTTGGCTTGTATGGCGGGGTATAACAGCGAGCGGTTCAAG
TCGCGATCGCTGCTGTCCGGCTTCGAGGGGTATCGGGCGGCGGTGCTGAC
GCGTGAGCAGGGCTTTGAACATGGCGGGCAGGCGTTTAGCATGGTGAGAC
GCGCGGTGGGTGAGCAGTGGGCTTCCAAGATTCGCGGCACGGTGCTTTGT
AAGGATCGACGGAAGGCGGTGTTCGACGTGCCGGATGAGCTGGCGGAGGA
GGTTTGTGGCAGGGGTGGGCAGCTGGGTGGGGGGTGTGTGATTGAGGTGG
TGGACGAGATGCCCGAGCTGCAGGAGGAGAAGTTTGACGTACGGGAGGCG
ATGAATCGTGTGTACGAGCGCAAGCAGATGCAGCGGCGTAA
back to top

Coding sequence (CDS) from alignment at tig00000075_pilon:329988..332128-

>Ggra9186.t1 ID=Ggra9186.t1|Name=Ggra9186.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2040bp|location=Sequence derived from alignment at tig00000075_pilon:329988..332128- (Gracilaria gracilis GNS1m male)
ATGGGTGTCGAAGATTTGGAGAAGCACGATATGGCTTCACCTGTACTCGA
AGTGGAAAAACAGCTCAAGTCCGATACCAACAAGTCCAAGTCTGACCGGA
AGGAAAAGAAGAAAGACAAGAAGGAGAAACGAGTCAAGAAGGACAAGAAG
GATAAGAAGGACAAGAAGGACAAGAAGGAGAGAAAGGACAAGAAGGAAAA
GAAGGAGAAGAAACGCAAACGAGACACCTCCCCGTCTTCGTCAGAGGACG
AAAACTCGAGTCCTTCCTCCCCGGACCACGTTCTCGATGCCACTGCCCTT
TATGATGAAGAACAGCACCCCAGCAAGAAGGCAAAGCTCGAAGAGAACAC
TGGCCCGCGCTTGGGCGTTGAACCTGAGATGGACGACATTGCTGAAGATG
AGAACATTGGCCTCGGAGAGCAAGTGAAACCCCAAGTTGATAGCAACGAC
GTCAACGCGTTTGGCATGTCACAAATCACAGTCAACACTCTGAAGAAAAA
GGACATCAACTCCCTTTTTGAAATCCAATCTGCAACATACAAGCTGCTAC
GCATGGAGCGCAAGGACATCATCGGCCGCGCTCGAACCGGTTCCGGGAAA
ACGCTCGCGTTTGTGTTGCCCATCATCGAAACACTGGTGGCGGACAACAT
GACGCGTGTGCGCGCACACGAGAAGCCCTTGGTGCTATGCTTGGCGCCGA
CTCGAGAACTTGCGCAACAGGTTCATCGAGATTTTGAGTGGATTGCAGGC
GGTCATCGACTCTCGACGACGTGCTTTACGGGCGGAACACCGAAGGGTCC
GCAGAAGGGAGAGTTGCGACGCGGCGTGGATGTGCTGGTTGGCACTCCCG
GCCGCATCATGGATCATCTGGATGACGGCGCTCTGTCGCTTGCTGGTGTA
CAGTTTGTGGTGTTGGATGAAGCAGATGAAATGCTTTCTATGGGCTTTCA
AGAAGACGTGGAACGCATTCTAAGCGCGTGTACCACGTCAAAGATGAAGC
AGACTCTGTTGTTCTCTGCCACAATTCCCAGATGGGTGAAGGGGCTCGCG
CAGAAGTACATGCGCGCGGACGCGACGGTGACGGTGGACACTGTGAGCAA
TGAGAAAAACCGGACCAACTCCAGCATCACGCATCTGGCACTCGCTTGTC
CGCCGTCGGAACGTGCGTCTACCATGGCGGACGTGGCAAGGATGTATAGC
GGGGCGAACGGAAAGACTTTAATCTTTACGGACACGAAGGCGGAAGCTAA
CGAACTGTCGGAGGAAAAGTTGCTGGTAGGCGCTCTGGGTGCTGTTGGGC
TGTTACACGGTGATATTCCACAAAGCCAGAGAGAACGCACGCTGGCGTCG
TACAGAGAAGGCAGGATCCGCGTGCTGGTGGCGACGGACGTGGCGGCAAG
AGGGTTGGATATCAAGGCGGTGGATCTGGTGTTACAGACACATCCTCCAA
GTAACTACGAGACGTATATCCATCGCTCTGGACGTACGGGGCGCGCTGGG
AAGAGCGGTACTTGTTTGACGTTCTACTCGCTCAAGGAAAAGTTCCTGAT
CGGGCTGATTGAACATAAGGCTGGCATCAAGTTTGAGCGCGGTCGACCAC
CGCAGGTGAGCGACTTGGTGCGCTCTAGCGCGGCGGATACGGCCAAATTG
ATGGGCGCGGTGCACGCGGATAACGTGGCGCTGTTCAGAGAGGTGGCGCG
AAAGGTGATGCGGCAGTTTGGGGATGAAGAGGACGCGGCGGAGAGAGCTT
TGGCGGCGTCGTTGGCTTGTATGGCGGGGTATAACAGCGAGCGGTTCAAG
TCGCGATCGCTGCTGTCCGGCTTCGAGGGGTATCGGGCGGCGGTGCTGAC
GCGTGAGCAGGGCTTTGAACATGGCGGGCAGGCGTTTAGCATGGTGAGAC
GCGCGGTGGGTGAGCAGTGGGCTTCCAAGATTCGCGGCACGGTGCTTTGT
AAGGATCGACGGAAGGCGGTGTTCGACGTGCCGGATGAGCTGGCGGAGGA
GGTTTGTGGCAGGGGTGGGCAGCTGGATGCAGCGGCGTAA
back to top