Ggra9221.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9221.t1
Unique NameGgra9221.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length539
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:416662..418278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704435.1
PFAMsDUF295,F-box,RHD3
Max annot lvl2759|Eukaryota
Evalue1.25e-135
EggNOG OGsKOG2203@1|root,KOG2203@2759|Eukaryota
DescriptionGTP binding
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9221Ggra9221Gracilaria gracilis GNS1m malegenetig00000075_pilon 416662..418278 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9221.t1.stop1Ggra9221.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 416662..416664 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9221.t1.CDS1Ggra9221.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 416662..418278 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9221.t1.exon1Ggra9221.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 416662..418278 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9221.t1.start1Ggra9221.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 418276..418278 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9221.t1Ggra9221.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 416662..418278 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9221.t1 ID=Ggra9221.t1|Name=Ggra9221.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=539bp
MDTGSSQSVLQLINARGEFNSEEFEKFAIEHFPEDQTDQDANLVTIALLG
SRTSGKSTLANRLFSTNFAVARPFAGRGTQGCVAAVSPSRYLILDSQGSD
GRDGENHKVARVTTFSLALANALIFNLWAADLGRYEAAGYSLLRTIFTEH
IRIFQGEPGEPVKTMIVFVIRDHDDESPLDSLKSILMNDIESMWNDIDAN
GAALSDLFDFEFVSLPHIRHRSDEFDEAVDNLSQRFCNPNHPQYLLHTDY
SRKIPIEGLYNYADVVWKDTEQDKSVELPGKKDLVAAYRCDVAYDAQQRP
SLAQLNRWTSEVDRGNTVSSFGVKASNLLDSALEKYDRDTLAHASSPIRA
KKRSELQSSLQSRVRSLFNKQILLLQNAALQRFKKILLSKVTNPMYETET
PIALRNVDEWFARHAESLLVPSMRLSFRSARQEVQNALHTYGEGFANSPT
AQLQAMQQMERQAQRAPPRQRNIEFGLGINAACRPSGFGNFQLITGYARG
PHTMQFTLVNDKDAAEQEGQGQVPFFRIQPTINTTVDL*
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spliced messenger RNA

>Ggra9221.t1 ID=Ggra9221.t1|Name=Ggra9221.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1617bp|location=Sequence derived from alignment at tig00000075_pilon:416662..418278- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACACCGGCTCGTCACAGTCCGTGTTACAACTCATCAATGCGCGCGG
CGAGTTCAACTCGGAGGAGTTTGAGAAGTTTGCCATCGAACACTTCCCAG
AGGATCAGACCGATCAGGATGCCAACCTTGTCACCATAGCGTTGTTGGGT
TCTCGTACCTCGGGAAAGAGTACTTTGGCTAACCGTTTGTTCTCTACCAA
CTTTGCCGTGGCTCGTCCGTTTGCCGGCCGTGGTACCCAGGGTTGTGTAG
CCGCTGTTTCGCCCTCGCGCTACTTAATTTTGGACTCGCAGGGCTCGGAC
GGACGGGATGGTGAGAACCATAAGGTCGCGCGTGTCACTACTTTTTCGCT
TGCGTTGGCAAATGCTCTCATTTTCAATTTGTGGGCTGCCGACCTAGGTC
GCTACGAGGCTGCGGGTTATTCGTTGTTAAGAACCATTTTTACGGAGCAT
ATCCGCATCTTTCAGGGAGAACCCGGAGAACCCGTCAAGACAATGATTGT
GTTTGTGATTCGCGACCATGACGATGAATCGCCTTTGGATTCTCTCAAGA
GCATTCTCATGAATGATATCGAGTCCATGTGGAACGATATCGATGCCAAT
GGTGCTGCCTTGTCCGATTTGTTTGACTTCGAGTTTGTGTCACTACCTCA
TATTCGCCATCGCAGTGACGAGTTTGATGAAGCAGTTGACAATCTATCGC
AGCGTTTTTGTAATCCGAACCACCCACAGTACTTGCTCCATACGGACTAC
TCTCGAAAGATCCCCATTGAAGGGCTGTACAACTATGCCGACGTTGTGTG
GAAGGACACCGAGCAGGACAAGTCTGTCGAACTGCCAGGTAAGAAAGACC
TGGTTGCTGCATACCGGTGTGACGTTGCTTATGATGCGCAGCAGCGCCCC
TCTTTGGCTCAGCTCAATCGATGGACATCAGAAGTTGACAGGGGAAACAC
AGTATCTTCTTTCGGTGTGAAGGCTTCCAACCTGCTTGATTCTGCCTTGG
AGAAATATGACCGAGACACTTTGGCGCATGCTTCCTCACCAATCCGCGCG
AAGAAGCGATCCGAGTTGCAATCGTCATTGCAGTCTCGGGTACGCTCGTT
GTTCAACAAGCAAATTCTTTTATTGCAGAATGCTGCGCTGCAGAGATTCA
AGAAAATTTTGCTGTCCAAGGTCACCAACCCCATGTATGAGACGGAGACG
CCTATTGCGTTGCGCAACGTTGACGAATGGTTTGCCAGACACGCAGAGAG
TTTGCTTGTGCCGTCTATGCGCCTTTCATTCCGTTCGGCGAGACAGGAAG
TACAGAACGCATTGCATACTTATGGCGAGGGCTTTGCTAACTCGCCAACT
GCGCAGCTGCAGGCAATGCAGCAAATGGAAAGACAAGCTCAGCGTGCTCC
TCCCAGACAGCGTAACATCGAATTTGGCCTCGGAATCAATGCAGCGTGTC
GTCCTAGCGGCTTTGGAAACTTCCAGCTCATCACCGGATATGCTCGTGGT
CCGCATACAATGCAGTTCACATTAGTGAATGACAAGGATGCTGCTGAACA
AGAAGGACAAGGGCAAGTGCCATTCTTCCGGATCCAACCTACTATTAATA
CGACAGTTGATCTTTAG
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protein sequence of Ggra9221.t1

>Ggra9221.t1 ID=Ggra9221.t1|Name=Ggra9221.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=539bp
MDTGSSQSVLQLINARGEFNSEEFEKFAIEHFPEDQTDQDANLVTIALLG
SRTSGKSTLANRLFSTNFAVARPFAGRGTQGCVAAVSPSRYLILDSQGSD
GRDGENHKVARVTTFSLALANALIFNLWAADLGRYEAAGYSLLRTIFTEH
IRIFQGEPGEPVKTMIVFVIRDHDDESPLDSLKSILMNDIESMWNDIDAN
GAALSDLFDFEFVSLPHIRHRSDEFDEAVDNLSQRFCNPNHPQYLLHTDY
SRKIPIEGLYNYADVVWKDTEQDKSVELPGKKDLVAAYRCDVAYDAQQRP
SLAQLNRWTSEVDRGNTVSSFGVKASNLLDSALEKYDRDTLAHASSPIRA
KKRSELQSSLQSRVRSLFNKQILLLQNAALQRFKKILLSKVTNPMYETET
PIALRNVDEWFARHAESLLVPSMRLSFRSARQEVQNALHTYGEGFANSPT
AQLQAMQQMERQAQRAPPRQRNIEFGLGINAACRPSGFGNFQLITGYARG
PHTMQFTLVNDKDAAEQEGQGQVPFFRIQPTINTTVDL*
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mRNA from alignment at tig00000075_pilon:416662..418278-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9221.t1 ID=Ggra9221.t1|Name=Ggra9221.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1617bp|location=Sequence derived from alignment at tig00000075_pilon:416662..418278- (Gracilaria gracilis GNS1m male)
ATGGACACCGGCTCGTCACAGTCCGTGTTACAACTCATCAATGCGCGCGG
CGAGTTCAACTCGGAGGAGTTTGAGAAGTTTGCCATCGAACACTTCCCAG
AGGATCAGACCGATCAGGATGCCAACCTTGTCACCATAGCGTTGTTGGGT
TCTCGTACCTCGGGAAAGAGTACTTTGGCTAACCGTTTGTTCTCTACCAA
CTTTGCCGTGGCTCGTCCGTTTGCCGGCCGTGGTACCCAGGGTTGTGTAG
CCGCTGTTTCGCCCTCGCGCTACTTAATTTTGGACTCGCAGGGCTCGGAC
GGACGGGATGGTGAGAACCATAAGGTCGCGCGTGTCACTACTTTTTCGCT
TGCGTTGGCAAATGCTCTCATTTTCAATTTGTGGGCTGCCGACCTAGGTC
GCTACGAGGCTGCGGGTTATTCGTTGTTAAGAACCATTTTTACGGAGCAT
ATCCGCATCTTTCAGGGAGAACCCGGAGAACCCGTCAAGACAATGATTGT
GTTTGTGATTCGCGACCATGACGATGAATCGCCTTTGGATTCTCTCAAGA
GCATTCTCATGAATGATATCGAGTCCATGTGGAACGATATCGATGCCAAT
GGTGCTGCCTTGTCCGATTTGTTTGACTTCGAGTTTGTGTCACTACCTCA
TATTCGCCATCGCAGTGACGAGTTTGATGAAGCAGTTGACAATCTATCGC
AGCGTTTTTGTAATCCGAACCACCCACAGTACTTGCTCCATACGGACTAC
TCTCGAAAGATCCCCATTGAAGGGCTGTACAACTATGCCGACGTTGTGTG
GAAGGACACCGAGCAGGACAAGTCTGTCGAACTGCCAGGTAAGAAAGACC
TGGTTGCTGCATACCGGTGTGACGTTGCTTATGATGCGCAGCAGCGCCCC
TCTTTGGCTCAGCTCAATCGATGGACATCAGAAGTTGACAGGGGAAACAC
AGTATCTTCTTTCGGTGTGAAGGCTTCCAACCTGCTTGATTCTGCCTTGG
AGAAATATGACCGAGACACTTTGGCGCATGCTTCCTCACCAATCCGCGCG
AAGAAGCGATCCGAGTTGCAATCGTCATTGCAGTCTCGGGTACGCTCGTT
GTTCAACAAGCAAATTCTTTTATTGCAGAATGCTGCGCTGCAGAGATTCA
AGAAAATTTTGCTGTCCAAGGTCACCAACCCCATGTATGAGACGGAGACG
CCTATTGCGTTGCGCAACGTTGACGAATGGTTTGCCAGACACGCAGAGAG
TTTGCTTGTGCCGTCTATGCGCCTTTCATTCCGTTCGGCGAGACAGGAAG
TACAGAACGCATTGCATACTTATGGCGAGGGCTTTGCTAACTCGCCAACT
GCGCAGCTGCAGGCAATGCAGCAAATGGAAAGACAAGCTCAGCGTGCTCC
TCCCAGACAGCGTAACATCGAATTTGGCCTCGGAATCAATGCAGCGTGTC
GTCCTAGCGGCTTTGGAAACTTCCAGCTCATCACCGGATATGCTCGTGGT
CCGCATACAATGCAGTTCACATTAGTGAATGACAAGGATGCTGCTGAACA
AGAAGGACAAGGGCAAGTGCCATTCTTCCGGATCCAACCTACTATTAATA
CGACAGTTGATCTTTAG
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Coding sequence (CDS) from alignment at tig00000075_pilon:416662..418278-

>Ggra9221.t1 ID=Ggra9221.t1|Name=Ggra9221.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1617bp|location=Sequence derived from alignment at tig00000075_pilon:416662..418278- (Gracilaria gracilis GNS1m male)
ATGGACACCGGCTCGTCACAGTCCGTGTTACAACTCATCAATGCGCGCGG
CGAGTTCAACTCGGAGGAGTTTGAGAAGTTTGCCATCGAACACTTCCCAG
AGGATCAGACCGATCAGGATGCCAACCTTGTCACCATAGCGTTGTTGGGT
TCTCGTACCTCGGGAAAGAGTACTTTGGCTAACCGTTTGTTCTCTACCAA
CTTTGCCGTGGCTCGTCCGTTTGCCGGCCGTGGTACCCAGGGTTGTGTAG
CCGCTGTTTCGCCCTCGCGCTACTTAATTTTGGACTCGCAGGGCTCGGAC
GGACGGGATGGTGAGAACCATAAGGTCGCGCGTGTCACTACTTTTTCGCT
TGCGTTGGCAAATGCTCTCATTTTCAATTTGTGGGCTGCCGACCTAGGTC
GCTACGAGGCTGCGGGTTATTCGTTGTTAAGAACCATTTTTACGGAGCAT
ATCCGCATCTTTCAGGGAGAACCCGGAGAACCCGTCAAGACAATGATTGT
GTTTGTGATTCGCGACCATGACGATGAATCGCCTTTGGATTCTCTCAAGA
GCATTCTCATGAATGATATCGAGTCCATGTGGAACGATATCGATGCCAAT
GGTGCTGCCTTGTCCGATTTGTTTGACTTCGAGTTTGTGTCACTACCTCA
TATTCGCCATCGCAGTGACGAGTTTGATGAAGCAGTTGACAATCTATCGC
AGCGTTTTTGTAATCCGAACCACCCACAGTACTTGCTCCATACGGACTAC
TCTCGAAAGATCCCCATTGAAGGGCTGTACAACTATGCCGACGTTGTGTG
GAAGGACACCGAGCAGGACAAGTCTGTCGAACTGCCAGGTAAGAAAGACC
TGGTTGCTGCATACCGGTGTGACGTTGCTTATGATGCGCAGCAGCGCCCC
TCTTTGGCTCAGCTCAATCGATGGACATCAGAAGTTGACAGGGGAAACAC
AGTATCTTCTTTCGGTGTGAAGGCTTCCAACCTGCTTGATTCTGCCTTGG
AGAAATATGACCGAGACACTTTGGCGCATGCTTCCTCACCAATCCGCGCG
AAGAAGCGATCCGAGTTGCAATCGTCATTGCAGTCTCGGGTACGCTCGTT
GTTCAACAAGCAAATTCTTTTATTGCAGAATGCTGCGCTGCAGAGATTCA
AGAAAATTTTGCTGTCCAAGGTCACCAACCCCATGTATGAGACGGAGACG
CCTATTGCGTTGCGCAACGTTGACGAATGGTTTGCCAGACACGCAGAGAG
TTTGCTTGTGCCGTCTATGCGCCTTTCATTCCGTTCGGCGAGACAGGAAG
TACAGAACGCATTGCATACTTATGGCGAGGGCTTTGCTAACTCGCCAACT
GCGCAGCTGCAGGCAATGCAGCAAATGGAAAGACAAGCTCAGCGTGCTCC
TCCCAGACAGCGTAACATCGAATTTGGCCTCGGAATCAATGCAGCGTGTC
GTCCTAGCGGCTTTGGAAACTTCCAGCTCATCACCGGATATGCTCGTGGT
CCGCATACAATGCAGTTCACATTAGTGAATGACAAGGATGCTGCTGAACA
AGAAGGACAAGGGCAAGTGCCATTCTTCCGGATCCAACCTACTATTAATA
CGACAGTTGATCTTTAG
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