Ggra9166.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9166.t1
Unique NameGgra9166.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length184
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:280911..281462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S85_9V6.1
PFAMsPrefoldin
Max annot lvl35493|Streptophyta
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
Evalue1.41e-09
EggNOG OGsKOG3047@1|root,KOG3047@2759|Eukaryota,37TTF@33090|Viridiplantae,3GI5Y@35493|Streptophyta
DescriptionProtein UXT homolog
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9166Ggra9166Gracilaria gracilis GNS1m malegenetig00000075_pilon 280911..281462 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9166.t1.start1Ggra9166.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 280911..280913 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9166.t1.CDS1Ggra9166.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 280911..281462 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9166.t1.exon1Ggra9166.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 280911..281462 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9166.t1.stop1Ggra9166.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 281460..281462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9166.t1Ggra9166.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 280911..281462 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9166.t1 ID=Ggra9166.t1|Name=Ggra9166.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=184bp
MKRNKTKTEEHDHEETDAVITSEETRVAIQNYSRALEKRLKPTLEATFSL
RDDALKQLAELEQTERALRVVEKECRTSRARPGKPVFESRVNLGENFFVR
AEAKRAEKVVLDLGLGVFVEVGFREANKFVQERRQMFRNIADTETKKVAE
IQAMVEGVVKCLTSLQIHDGSKGDQEHAHHEEA*
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spliced messenger RNA

>Ggra9166.t1 ID=Ggra9166.t1|Name=Ggra9166.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=552bp|location=Sequence derived from alignment at tig00000075_pilon:280911..281462+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGAAACAAGACAAAGACTGAAGAACATGACCATGAGGAAACGGA
TGCAGTGATAACGTCGGAGGAAACAAGAGTAGCAATCCAAAACTATAGCA
GAGCACTGGAAAAACGATTGAAGCCAACATTAGAAGCTACATTCTCTCTT
CGTGACGATGCTTTGAAACAGTTAGCGGAGCTGGAACAAACGGAAAGAGC
TCTACGCGTTGTAGAAAAAGAATGCCGAACTTCTCGCGCAAGGCCCGGAA
AGCCAGTTTTCGAATCAAGGGTCAACCTAGGCGAGAACTTCTTCGTACGT
GCAGAAGCTAAGCGAGCTGAAAAAGTGGTTTTGGATCTTGGCCTCGGCGT
TTTTGTAGAAGTTGGATTTCGCGAAGCAAACAAATTTGTTCAGGAGCGCC
GGCAGATGTTTCGAAACATTGCAGACACTGAGACCAAGAAAGTTGCAGAG
ATACAGGCAATGGTCGAAGGTGTGGTTAAATGCCTAACCAGTCTTCAGAT
ACATGACGGATCGAAAGGAGATCAAGAGCACGCCCACCACGAAGAAGCAT
AG
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protein sequence of Ggra9166.t1

>Ggra9166.t1 ID=Ggra9166.t1|Name=Ggra9166.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=184bp
MKRNKTKTEEHDHEETDAVITSEETRVAIQNYSRALEKRLKPTLEATFSL
RDDALKQLAELEQTERALRVVEKECRTSRARPGKPVFESRVNLGENFFVR
AEAKRAEKVVLDLGLGVFVEVGFREANKFVQERRQMFRNIADTETKKVAE
IQAMVEGVVKCLTSLQIHDGSKGDQEHAHHEEA*
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mRNA from alignment at tig00000075_pilon:280911..281462+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9166.t1 ID=Ggra9166.t1|Name=Ggra9166.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=552bp|location=Sequence derived from alignment at tig00000075_pilon:280911..281462+ (Gracilaria gracilis GNS1m male)
ATGAAGAGAAACAAGACAAAGACTGAAGAACATGACCATGAGGAAACGGA
TGCAGTGATAACGTCGGAGGAAACAAGAGTAGCAATCCAAAACTATAGCA
GAGCACTGGAAAAACGATTGAAGCCAACATTAGAAGCTACATTCTCTCTT
CGTGACGATGCTTTGAAACAGTTAGCGGAGCTGGAACAAACGGAAAGAGC
TCTACGCGTTGTAGAAAAAGAATGCCGAACTTCTCGCGCAAGGCCCGGAA
AGCCAGTTTTCGAATCAAGGGTCAACCTAGGCGAGAACTTCTTCGTACGT
GCAGAAGCTAAGCGAGCTGAAAAAGTGGTTTTGGATCTTGGCCTCGGCGT
TTTTGTAGAAGTTGGATTTCGCGAAGCAAACAAATTTGTTCAGGAGCGCC
GGCAGATGTTTCGAAACATTGCAGACACTGAGACCAAGAAAGTTGCAGAG
ATACAGGCAATGGTCGAAGGTGTGGTTAAATGCCTAACCAGTCTTCAGAT
ACATGACGGATCGAAAGGAGATCAAGAGCACGCCCACCACGAAGAAGCAT
AG
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Coding sequence (CDS) from alignment at tig00000075_pilon:280911..281462+

>Ggra9166.t1 ID=Ggra9166.t1|Name=Ggra9166.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=552bp|location=Sequence derived from alignment at tig00000075_pilon:280911..281462+ (Gracilaria gracilis GNS1m male)
ATGAAGAGAAACAAGACAAAGACTGAAGAACATGACCATGAGGAAACGGA
TGCAGTGATAACGTCGGAGGAAACAAGAGTAGCAATCCAAAACTATAGCA
GAGCACTGGAAAAACGATTGAAGCCAACATTAGAAGCTACATTCTCTCTT
CGTGACGATGCTTTGAAACAGTTAGCGGAGCTGGAACAAACGGAAAGAGC
TCTACGCGTTGTAGAAAAAGAATGCCGAACTTCTCGCGCAAGGCCCGGAA
AGCCAGTTTTCGAATCAAGGGTCAACCTAGGCGAGAACTTCTTCGTACGT
GCAGAAGCTAAGCGAGCTGAAAAAGTGGTTTTGGATCTTGGCCTCGGCGT
TTTTGTAGAAGTTGGATTTCGCGAAGCAAACAAATTTGTTCAGGAGCGCC
GGCAGATGTTTCGAAACATTGCAGACACTGAGACCAAGAAAGTTGCAGAG
ATACAGGCAATGGTCGAAGGTGTGGTTAAATGCCTAACCAGTCTTCAGAT
ACATGACGGATCGAAAGGAGATCAAGAGCACGCCCACCACGAAGAAGCAT
AG
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