Ggra9267.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9267.t1
Unique Name	Ggra9267.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	643

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:635880..637808 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9267	Ggra9267	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 635880..637808 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9267.t1.start1	Ggra9267.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 635880..635882 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9267.t1.CDS1	Ggra9267.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 635880..637808 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9267.t1.exon1	Ggra9267.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 635880..637808 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9267.t1.stop1	Ggra9267.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 637806..637808 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9267.t1	Ggra9267.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 635880..637808 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:635880..637808+
coding sequence from alignment at tig00000075_pilon:635880..637808+

mRNA sequence

>Ggra9267.t1 ID=Ggra9267.t1|Name=Ggra9267.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=643bp
MEFEPSSALRLRSSVLRSLLFLATVLLLPSFVFAESESDDCATPATRVSP
AFSHDPWPIRRYLSLSTSAPSARFYRNNKGEGEKMKRVFRFLKDLLNIMD
TRRNANDESACNLHRELDWVSRMEDAAEKRQIIQAKNGVHNSCPSRLDFT
KDEDRKDFDSSLGEGVSQMLRDAVLSMKPAVETSSESPFKLGMVNWSRIV
PTTDWDLRHLSQQCRLETVSAYRVDGRLYMRVAVTNRPVDDFALDYDRQV
FEEWVKDDFEGSLIMTHPRLIPVDSKLDIPGEIEESTTIVEKWSARLLLA
SHGTMLMEDNPAISEAMRQNAVDIDLAEDAIVISNVAILALPLTMNLIPV
AFLAELSTVAMLAYIIFTDVVSTLPFLVKGVELIGAADNERRETVAFYMG
NKTFGEIEVWTATCQGEDKFFAIGVSFVAIAVAAIVVGVFLEVFAGIVMR
RRRRKEGADAEGPFGRAAFDTTKLSLLGSGTDADGLERRYSIDADDIRDE
SDTETRPSSNESTTAGEKRWWRWGSQSSPNTTSVLNVKVMPSVDSDVLSV
DIIPRGEAYFSDEKKLEGVQEETISFMNRLKIMLRFLRSGDGHGSQGFSV
GVGSDGMSSAERAARASGSEGYSYGYDEEEEGQESRRDSSMV*

spliced messenger RNA

>Ggra9267.t1 ID=Ggra9267.t1|Name=Ggra9267.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1929bp|location=Sequence derived from alignment at tig00000075_pilon:635880..637808+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTTTGAGCCTTCTTCTGCACTTCGCCTGCGTTCTTCGGTCTTGCG
CTCCTTGCTGTTCCTTGCCACTGTTCTCCTGCTTCCTTCCTTCGTGTTCG
CCGAATCTGAGAGCGACGATTGCGCCACTCCTGCCACTCGTGTGTCTCCT
GCATTCAGTCACGACCCATGGCCCATTCGGCGCTATCTTTCGCTGTCTAC
TTCAGCCCCATCCGCCCGCTTTTATCGCAACAACAAGGGGGAAGGAGAGA
AGATGAAACGCGTCTTCCGTTTTCTCAAAGACCTTCTGAACATTATGGAT
ACTCGTCGTAATGCCAACGATGAGTCTGCGTGCAATCTTCATCGGGAGCT
AGACTGGGTTTCCAGAATGGAAGACGCCGCCGAGAAGCGTCAGATTATTC
AGGCGAAAAATGGCGTTCACAATTCTTGTCCGTCCAGGCTAGACTTCACG
AAGGACGAAGACCGCAAAGACTTCGACTCTTCCCTTGGAGAAGGGGTGAG
CCAAATGCTTAGAGATGCTGTCTTGTCTATGAAGCCCGCAGTCGAGACAA
GTAGTGAGTCGCCATTTAAACTGGGGATGGTGAATTGGTCGCGTATCGTC
CCTACCACCGATTGGGACCTTCGACACCTTTCGCAGCAGTGCCGTTTGGA
AACTGTATCAGCTTACCGAGTGGATGGGCGGCTGTACATGCGGGTAGCAG
TCACCAATCGCCCTGTCGATGACTTTGCTTTGGATTACGATCGTCAAGTA
TTCGAAGAATGGGTCAAAGACGATTTTGAGGGCTCATTAATAATGACTCA
TCCCCGCTTGATACCTGTTGATTCCAAGCTAGACATACCCGGCGAAATTG
AAGAATCAACGACCATAGTAGAAAAGTGGTCGGCCAGGCTTCTTCTGGCT
TCGCACGGTACCATGCTCATGGAAGATAACCCAGCTATATCTGAGGCGAT
GAGACAAAACGCTGTGGACATAGATCTTGCAGAAGATGCCATTGTAATCA
GCAATGTCGCAATTCTTGCTTTACCGTTAACGATGAATCTTATACCCGTT
GCATTTCTGGCAGAGTTAAGCACAGTTGCGATGCTTGCGTATATCATCTT
CACAGATGTGGTTTCCACGCTACCGTTCCTTGTTAAGGGTGTGGAGCTTA
TTGGAGCCGCTGATAATGAACGTCGGGAAACGGTTGCGTTTTATATGGGC
AATAAGACGTTTGGAGAGATTGAGGTTTGGACCGCTACTTGCCAGGGTGA
GGATAAGTTTTTTGCAATCGGGGTGTCGTTTGTGGCGATAGCTGTGGCTG
CCATAGTGGTTGGTGTGTTTCTGGAAGTTTTTGCTGGCATCGTTATGAGA
CGGAGACGGAGAAAAGAGGGTGCAGATGCGGAAGGACCGTTTGGTAGAGC
AGCGTTTGATACAACGAAGCTAAGCTTGTTGGGGAGTGGTACTGATGCAG
ATGGGTTGGAGAGGCGGTACTCTATCGATGCCGATGATATCAGAGATGAA
TCTGACACAGAGACTAGACCATCGTCCAACGAATCGACTACAGCAGGGGA
GAAGCGATGGTGGCGATGGGGTTCGCAGAGTTCACCTAACACAACATCAG
TTCTGAACGTGAAAGTGATGCCGAGTGTCGATAGCGATGTTCTTAGTGTT
GACATCATACCCAGAGGTGAAGCTTACTTCTCAGATGAAAAGAAGCTCGA
AGGCGTACAAGAGGAAACAATCTCATTTATGAATCGATTGAAGATTATGC
TTCGCTTCTTGAGAAGCGGGGATGGTCACGGAAGTCAAGGCTTTTCTGTA
GGGGTTGGAAGTGACGGCATGTCTAGCGCTGAACGTGCTGCGCGGGCAAG
TGGGTCCGAAGGTTATTCTTATGGGTATGATGAAGAGGAGGAGGGCCAAG
AATCTCGGAGGGACTCATCGATGGTCTGA

protein sequence of Ggra9267.t1

>Ggra9267.t1 ID=Ggra9267.t1|Name=Ggra9267.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=643bp
MEFEPSSALRLRSSVLRSLLFLATVLLLPSFVFAESESDDCATPATRVSP
AFSHDPWPIRRYLSLSTSAPSARFYRNNKGEGEKMKRVFRFLKDLLNIMD
TRRNANDESACNLHRELDWVSRMEDAAEKRQIIQAKNGVHNSCPSRLDFT
KDEDRKDFDSSLGEGVSQMLRDAVLSMKPAVETSSESPFKLGMVNWSRIV
PTTDWDLRHLSQQCRLETVSAYRVDGRLYMRVAVTNRPVDDFALDYDRQV
FEEWVKDDFEGSLIMTHPRLIPVDSKLDIPGEIEESTTIVEKWSARLLLA
SHGTMLMEDNPAISEAMRQNAVDIDLAEDAIVISNVAILALPLTMNLIPV
AFLAELSTVAMLAYIIFTDVVSTLPFLVKGVELIGAADNERRETVAFYMG
NKTFGEIEVWTATCQGEDKFFAIGVSFVAIAVAAIVVGVFLEVFAGIVMR
RRRRKEGADAEGPFGRAAFDTTKLSLLGSGTDADGLERRYSIDADDIRDE
SDTETRPSSNESTTAGEKRWWRWGSQSSPNTTSVLNVKVMPSVDSDVLSV
DIIPRGEAYFSDEKKLEGVQEETISFMNRLKIMLRFLRSGDGHGSQGFSV
GVGSDGMSSAERAARASGSEGYSYGYDEEEEGQESRRDSSMV*

mRNA from alignment at tig00000075_pilon:635880..637808+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9267.t1 ID=Ggra9267.t1|Name=Ggra9267.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1929bp|location=Sequence derived from alignment at tig00000075_pilon:635880..637808+ (Gracilaria gracilis GNS1m male)
ATGGAGTTTGAGCCTTCTTCTGCACTTCGCCTGCGTTCTTCGGTCTTGCG
CTCCTTGCTGTTCCTTGCCACTGTTCTCCTGCTTCCTTCCTTCGTGTTCG
CCGAATCTGAGAGCGACGATTGCGCCACTCCTGCCACTCGTGTGTCTCCT
GCATTCAGTCACGACCCATGGCCCATTCGGCGCTATCTTTCGCTGTCTAC
TTCAGCCCCATCCGCCCGCTTTTATCGCAACAACAAGGGGGAAGGAGAGA
AGATGAAACGCGTCTTCCGTTTTCTCAAAGACCTTCTGAACATTATGGAT
ACTCGTCGTAATGCCAACGATGAGTCTGCGTGCAATCTTCATCGGGAGCT
AGACTGGGTTTCCAGAATGGAAGACGCCGCCGAGAAGCGTCAGATTATTC
AGGCGAAAAATGGCGTTCACAATTCTTGTCCGTCCAGGCTAGACTTCACG
AAGGACGAAGACCGCAAAGACTTCGACTCTTCCCTTGGAGAAGGGGTGAG
CCAAATGCTTAGAGATGCTGTCTTGTCTATGAAGCCCGCAGTCGAGACAA
GTAGTGAGTCGCCATTTAAACTGGGGATGGTGAATTGGTCGCGTATCGTC
CCTACCACCGATTGGGACCTTCGACACCTTTCGCAGCAGTGCCGTTTGGA
AACTGTATCAGCTTACCGAGTGGATGGGCGGCTGTACATGCGGGTAGCAG
TCACCAATCGCCCTGTCGATGACTTTGCTTTGGATTACGATCGTCAAGTA
TTCGAAGAATGGGTCAAAGACGATTTTGAGGGCTCATTAATAATGACTCA
TCCCCGCTTGATACCTGTTGATTCCAAGCTAGACATACCCGGCGAAATTG
AAGAATCAACGACCATAGTAGAAAAGTGGTCGGCCAGGCTTCTTCTGGCT
TCGCACGGTACCATGCTCATGGAAGATAACCCAGCTATATCTGAGGCGAT
GAGACAAAACGCTGTGGACATAGATCTTGCAGAAGATGCCATTGTAATCA
GCAATGTCGCAATTCTTGCTTTACCGTTAACGATGAATCTTATACCCGTT
GCATTTCTGGCAGAGTTAAGCACAGTTGCGATGCTTGCGTATATCATCTT
CACAGATGTGGTTTCCACGCTACCGTTCCTTGTTAAGGGTGTGGAGCTTA
TTGGAGCCGCTGATAATGAACGTCGGGAAACGGTTGCGTTTTATATGGGC
AATAAGACGTTTGGAGAGATTGAGGTTTGGACCGCTACTTGCCAGGGTGA
GGATAAGTTTTTTGCAATCGGGGTGTCGTTTGTGGCGATAGCTGTGGCTG
CCATAGTGGTTGGTGTGTTTCTGGAAGTTTTTGCTGGCATCGTTATGAGA
CGGAGACGGAGAAAAGAGGGTGCAGATGCGGAAGGACCGTTTGGTAGAGC
AGCGTTTGATACAACGAAGCTAAGCTTGTTGGGGAGTGGTACTGATGCAG
ATGGGTTGGAGAGGCGGTACTCTATCGATGCCGATGATATCAGAGATGAA
TCTGACACAGAGACTAGACCATCGTCCAACGAATCGACTACAGCAGGGGA
GAAGCGATGGTGGCGATGGGGTTCGCAGAGTTCACCTAACACAACATCAG
TTCTGAACGTGAAAGTGATGCCGAGTGTCGATAGCGATGTTCTTAGTGTT
GACATCATACCCAGAGGTGAAGCTTACTTCTCAGATGAAAAGAAGCTCGA
AGGCGTACAAGAGGAAACAATCTCATTTATGAATCGATTGAAGATTATGC
TTCGCTTCTTGAGAAGCGGGGATGGTCACGGAAGTCAAGGCTTTTCTGTA
GGGGTTGGAAGTGACGGCATGTCTAGCGCTGAACGTGCTGCGCGGGCAAG
TGGGTCCGAAGGTTATTCTTATGGGTATGATGAAGAGGAGGAGGGCCAAG
AATCTCGGAGGGACTCATCGATGGTCTGA

Coding sequence (CDS) from alignment at tig00000075_pilon:635880..637808+

>Ggra9267.t1 ID=Ggra9267.t1|Name=Ggra9267.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1929bp|location=Sequence derived from alignment at tig00000075_pilon:635880..637808+ (Gracilaria gracilis GNS1m male)
ATGGAGTTTGAGCCTTCTTCTGCACTTCGCCTGCGTTCTTCGGTCTTGCG
CTCCTTGCTGTTCCTTGCCACTGTTCTCCTGCTTCCTTCCTTCGTGTTCG
CCGAATCTGAGAGCGACGATTGCGCCACTCCTGCCACTCGTGTGTCTCCT
GCATTCAGTCACGACCCATGGCCCATTCGGCGCTATCTTTCGCTGTCTAC
TTCAGCCCCATCCGCCCGCTTTTATCGCAACAACAAGGGGGAAGGAGAGA
AGATGAAACGCGTCTTCCGTTTTCTCAAAGACCTTCTGAACATTATGGAT
ACTCGTCGTAATGCCAACGATGAGTCTGCGTGCAATCTTCATCGGGAGCT
AGACTGGGTTTCCAGAATGGAAGACGCCGCCGAGAAGCGTCAGATTATTC
AGGCGAAAAATGGCGTTCACAATTCTTGTCCGTCCAGGCTAGACTTCACG
AAGGACGAAGACCGCAAAGACTTCGACTCTTCCCTTGGAGAAGGGGTGAG
CCAAATGCTTAGAGATGCTGTCTTGTCTATGAAGCCCGCAGTCGAGACAA
GTAGTGAGTCGCCATTTAAACTGGGGATGGTGAATTGGTCGCGTATCGTC
CCTACCACCGATTGGGACCTTCGACACCTTTCGCAGCAGTGCCGTTTGGA
AACTGTATCAGCTTACCGAGTGGATGGGCGGCTGTACATGCGGGTAGCAG
TCACCAATCGCCCTGTCGATGACTTTGCTTTGGATTACGATCGTCAAGTA
TTCGAAGAATGGGTCAAAGACGATTTTGAGGGCTCATTAATAATGACTCA
TCCCCGCTTGATACCTGTTGATTCCAAGCTAGACATACCCGGCGAAATTG
AAGAATCAACGACCATAGTAGAAAAGTGGTCGGCCAGGCTTCTTCTGGCT
TCGCACGGTACCATGCTCATGGAAGATAACCCAGCTATATCTGAGGCGAT
GAGACAAAACGCTGTGGACATAGATCTTGCAGAAGATGCCATTGTAATCA
GCAATGTCGCAATTCTTGCTTTACCGTTAACGATGAATCTTATACCCGTT
GCATTTCTGGCAGAGTTAAGCACAGTTGCGATGCTTGCGTATATCATCTT
CACAGATGTGGTTTCCACGCTACCGTTCCTTGTTAAGGGTGTGGAGCTTA
TTGGAGCCGCTGATAATGAACGTCGGGAAACGGTTGCGTTTTATATGGGC
AATAAGACGTTTGGAGAGATTGAGGTTTGGACCGCTACTTGCCAGGGTGA
GGATAAGTTTTTTGCAATCGGGGTGTCGTTTGTGGCGATAGCTGTGGCTG
CCATAGTGGTTGGTGTGTTTCTGGAAGTTTTTGCTGGCATCGTTATGAGA
CGGAGACGGAGAAAAGAGGGTGCAGATGCGGAAGGACCGTTTGGTAGAGC
AGCGTTTGATACAACGAAGCTAAGCTTGTTGGGGAGTGGTACTGATGCAG
ATGGGTTGGAGAGGCGGTACTCTATCGATGCCGATGATATCAGAGATGAA
TCTGACACAGAGACTAGACCATCGTCCAACGAATCGACTACAGCAGGGGA
GAAGCGATGGTGGCGATGGGGTTCGCAGAGTTCACCTAACACAACATCAG
TTCTGAACGTGAAAGTGATGCCGAGTGTCGATAGCGATGTTCTTAGTGTT
GACATCATACCCAGAGGTGAAGCTTACTTCTCAGATGAAAAGAAGCTCGA
AGGCGTACAAGAGGAAACAATCTCATTTATGAATCGATTGAAGATTATGC
TTCGCTTCTTGAGAAGCGGGGATGGTCACGGAAGTCAAGGCTTTTCTGTA
GGGGTTGGAAGTGACGGCATGTCTAGCGCTGAACGTGCTGCGCGGGCAAG
TGGGTCCGAAGGTTATTCTTATGGGTATGATGAAGAGGAGGAGGGCCAAG
AATCTCGGAGGGACTCATCGATGGTCTGA