Ggra9167.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9167.t1
Unique NameGgra9167.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length161
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:282182..282921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMO183CT
PFAMsYbaB_DNA_bd
Max annot lvl2759|Eukaryota
Evalue1.15e-28
EggNOG OGsCOG0718@1|root,2S91Q@2759|Eukaryota
DescriptionYbaB/EbfC DNA-binding family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9167Ggra9167Gracilaria gracilis GNS1m malegenetig00000075_pilon 282182..282921 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9167.t1Ggra9167.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 282182..282921 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9167.t1.stop1Ggra9167.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 282182..282184 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9167.t1.CDS1Ggra9167.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 282182..282213 -
Ggra9167.t1.CDS2Ggra9167.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 282296..282383 -
Ggra9167.t1.CDS3Ggra9167.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000075_pilon 282471..282667 -
Ggra9167.t1.CDS4Ggra9167.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000075_pilon 282756..282921 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9167.t1.exon1Ggra9167.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 282182..282213 -
Ggra9167.t1.exon2Ggra9167.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 282296..282383 -
Ggra9167.t1.exon3Ggra9167.t1.exon3Gracilaria gracilis GNS1m maleexontig00000075_pilon 282471..282667 -
Ggra9167.t1.exon4Ggra9167.t1.exon4Gracilaria gracilis GNS1m maleexontig00000075_pilon 282756..282921 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9167.t1.intron1Ggra9167.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 282214..282295 -
Ggra9167.t1.intron2Ggra9167.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000075_pilon 282384..282470 -
Ggra9167.t1.intron3Ggra9167.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000075_pilon 282668..282755 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9167.t1.start1Ggra9167.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 282919..282921 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9167.t1 ID=Ggra9167.t1|Name=Ggra9167.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=161bp
MATPQPGFISSGVFSPRSSGAYRAGNKCAALRTRKLPGRFVMMAEKPKNP
LGGLGGLGNIMDAMKKAQEFTSVAKDLQEQLKNTEIEASVREGQVKVTMT
AQQVPVKIEVSDDLVALGSSEVSEAVTEGVIAAHSKATEYMREKMGNLSK
EFGIPQPPQK*
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spliced messenger RNA

>Ggra9167.t1 ID=Ggra9167.t1|Name=Ggra9167.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=483bp|location=Sequence derived from alignment at tig00000075_pilon:282182..282921- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACTCCTCAACCTGGATTTATCTCCTCTGGAGTTTTCTCGCCCAG
GTCTTCCGGCGCCTATCGCGCAGGGAACAAATGTGCTGCACTCAGAACTC
GTAAACTTCCAGGTCGCTTTGTCATGATGGCAGAGAAGCCCAAGAACCCA
CTTGGTGGACTTGGCGGTCTGGGGAACATCATGGATGCAATGAAAAAGGC
ACAGGAATTTACTTCAGTTGCTAAAGATCTACAAGAGCAATTGAAGAACA
CGGAAATAGAGGCTTCAGTACGAGAGGGGCAGGTCAAGGTTACAATGACT
GCGCAGCAAGTGCCAGTGAAAATAGAAGTATCGGATGACTTGGTGGCTTT
AGGTAGCTCTGAGGTGTCAGAAGCTGTCACAGAAGGTGTTATTGCGGCTC
ACTCGAAGGCTACAGAGTACATGAGGGAGAAGATGGGTAACTTGTCCAAA
GAGTTTGGAATTCCACAACCTCCTCAAAAGTGA
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protein sequence of Ggra9167.t1

>Ggra9167.t1 ID=Ggra9167.t1|Name=Ggra9167.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=161bp
MATPQPGFISSGVFSPRSSGAYRAGNKCAALRTRKLPGRFVMMAEKPKNP
LGGLGGLGNIMDAMKKAQEFTSVAKDLQEQLKNTEIEASVREGQVKVTMT
AQQVPVKIEVSDDLVALGSSEVSEAVTEGVIAAHSKATEYMREKMGNLSK
EFGIPQPPQK*
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mRNA from alignment at tig00000075_pilon:282182..282921-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9167.t1 ID=Ggra9167.t1|Name=Ggra9167.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=740bp|location=Sequence derived from alignment at tig00000075_pilon:282182..282921- (Gracilaria gracilis GNS1m male)
ATGGCTACTCCTCAACCTGGATTTATCTCCTCTGGAGTTTTCTCGCCCAG
GTCTTCCGGCGCCTATCGCGCAGGGAACAAATGTGCTGCACTCAGAACTC
GTAAACTTCCAGGTCGCTTTGTCATGATGGCAGAGAAGCCCAAGAACCCA
CTTGGTGGACTTGGCGGTACGTAGATCAAAATCAATAAGGGCTGTTTGGC
CATACATTATCTGCATCCGACACTAACGATCATCTGGTTCCTTGTGGGTT
TCAGGTCTGGGGAACATCATGGATGCAATGAAAAAGGCACAGGAATTTAC
TTCAGTTGCTAAAGATCTACAAGAGCAATTGAAGAACACGGAAATAGAGG
CTTCAGTACGAGAGGGGCAGGTCAAGGTTACAATGACTGCGCAGCAAGTG
CCAGTGAAAATAGAAGTATCGGATGACTTGGTGGCTTTAGGTAGCTCTGA
GGTACGTAGCTTATCTTCCTTCCGATTCGATTCATCTCGCAGGCTTGATG
TACTGACATGGTATTTATATGAATTCCCCACTACTCAGGTGTCAGAAGCT
GTCACAGAAGGTGTTATTGCGGCTCACTCGAAGGCTACAGAGTACATGAG
GGAGAAGATGGGTAACTTGTCCAAAGGTATGTCTTCTAACGGACCTATTC
AACCTAACTACGAATTAACTCGCTAACGCATTGGAAATGTTCTTCGACTG
ATTCTCAGAGTTTGGAATTCCACAACCTCCTCAAAAGTGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:282182..282921-

>Ggra9167.t1 ID=Ggra9167.t1|Name=Ggra9167.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=483bp|location=Sequence derived from alignment at tig00000075_pilon:282182..282921- (Gracilaria gracilis GNS1m male)
ATGGCTACTCCTCAACCTGGATTTATCTCCTCTGGAGTTTTCTCGCCCAG
GTCTTCCGGCGCCTATCGCGCAGGGAACAAATGTGCTGCACTCAGAACTC
GTAAACTTCCAGGTCGCTTTGTCATGATGGCAGAGAAGCCCAAGAACCCA
CTTGGTGGACTTGGCGGTCTGGGGAACATCATGGATGCAATGAAAAAGGC
ACAGGAATTTACTTCAGTTGCTAAAGATCTACAAGAGCAATTGAAGAACA
CGGAAATAGAGGCTTCAGTACGAGAGGGGCAGGTCAAGGTTACAATGACT
GCGCAGCAAGTGCCAGTGAAAATAGAAGTATCGGATGACTTGGTGGCTTT
AGGTAGCTCTGAGGTGTCAGAAGCTGTCACAGAAGGTGTTATTGCGGCTC
ACTCGAAGGCTACAGAGTACATGAGGGAGAAGATGGGTAACTTGTCCAAA
GAGTTTGGAATTCCACAACCTCCTCAAAAGTGA
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