Ggra9161.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9161.t1
Unique NameGgra9161.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length251
Homology
BLAST of Ggra9161.t1 vs. uniprot
Match: A0A2V3IGY2 (Single-stranded DNA-binding protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGY2_9FLOR)

HSP 1 Score: 240 bits (612), Expect = 3.750e-76
Identity = 123/227 (54.19%), Postives = 166/227 (73.13%), Query Frame = 0
Query:   33 SIIGQCCRNSFTGFK--IVHTKRKQRPISLPVNCQNLGYEEDEGIQIDEHLDSQWDFEIDEDELVEIEANPSIPQINSVTLVGRLGADPLFKVTSSGAELCTFSMAVTHDYDPTDSDEDKTSWFDIEVWGSLAKYASRAQKGVRVGVSGSLGFNCWTGRDGLEREDPIIRANTFEILQSRSE-------QRPYSRGHKENDGGRPPEPRSTSDSYPSLSGNLRDLPF 250
            S     C+ SF G +  +  + R ++ ++  + C+NLGYEE++ I+  E   SQWD EIDE ++VEIE + S P++N V LVGRLGADP+FKVT SGAELCTFS+AV H+YDPTD+D+DKTSW  +E+WG+LA+ A++A+KG RVG+SGSLG N WTGRDG++REDPI+RA+TFEILQSRSE       +  YS   ++ND       +S S+S  +++GNLRDLPF
Sbjct:   35 SFTSPTCQRSFRGIQLHVQSSLRARQRLARSIRCENLGYEEEDAIE--ELEGSQWDLEIDEADIVEIEYDDSFPKLNHVCLVGRLGADPVFKVTRSGAELCTFSIAVAHEYDPTDTDDDKTSWLGVEIWGNLARLAAKARKGFRVGLSGSLGLNSWTGRDGVKREDPIVRASTFEILQSRSEPASGSYAESRYSSSKRDNDF----PSKSASNSEINVTGNLRDLPF 255          
BLAST of Ggra9161.t1 vs. uniprot
Match: R7QGJ6 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QGJ6_CHOCR)

HSP 1 Score: 144 bits (364), Expect = 6.430e-39
Identity = 75/151 (49.67%), Postives = 101/151 (66.89%), Query Frame = 0
Query:  103 IPQINSVTLVGRLGADPLFKVTSSGAELCTFSMAVTHDYDPTDS-DEDKTSWFDIEVWGSLAKYASR-AQKGVRVGVSGSLGFNCWTGRDGLEREDPIIRANTFEILQSRSEQRPYS-RGHKENDGGRPPEPRSTSDSYPSLSGNLRDLPF 250
            +P +N + L GRLG DP  +  S+ A++C FS+AVT +YDP +  D+D+TSWFD+E WGS A+Y S+  +KG+RVGVSGSL  + WTG+DG  RE PI+ A++FEILQSRSEQ P    G+  +   R     S  D+    + NL DLPF
Sbjct:   96 LPLLNRIILTGRLGKDPSLRDISADAKVCNFSLAVTTEYDPDEGRDQDRTSWFDVEAWGSTAEYISKFGKKGMRVGVSGSLNVSSWTGKDGETRESPIVTADSFEILQSRSEQMPTMIDGNDRSTENRSNSQYSAGDTGRGATQNLSDLPF 246          
BLAST of Ggra9161.t1 vs. uniprot
Match: A0A218QW28 (Single-stranded DNA-binding protein n=3 Tax=Tolypothrix TaxID=111782 RepID=A0A218QW28_9CYAN)

HSP 1 Score: 75.5 bits (184), Expect = 2.430e-13
Identity = 45/118 (38.14%), Postives = 62/118 (52.54%), Query Frame = 0
Query:   97 IEANPSIPQINSVTLVGRLGADPLFKVTSSGAELCTFSMAVTHDYDPTDSDEDKTSWFDIEVWGSLAKYASR-AQKGVRVGVSGSLGFNCWT-GRDGLEREDPIIRANTFEILQSRSE 212
            IE  P I  +N+V LVGR+GADP  +   SG+   T S+AV         D     WF+IE+WG  A+ A+   +KG ++GVSG L    W     G  R  PI+ AN   +L S+ +
Sbjct:   35 IELTPQILTLNTVNLVGRVGADPEMRFFESGSVKATLSLAVRRRAKDAPPD-----WFNIELWGKTAEIAANYIRKGDQIGVSGYLKIEIWNDSTTGTLRSKPIVNANQLHLLGSKQD 147          
BLAST of Ggra9161.t1 vs. uniprot
Match: single-stranded DNA-binding protein n=1 Tax=Deinococcus roseus TaxID=392414 RepID=UPI001E4B0691 (single-stranded DNA-binding protein n=1 Tax=Deinococcus roseus TaxID=392414 RepID=UPI001E4B0691)

HSP 1 Score: 73.9 bits (180), Expect = 8.150e-13
Identity = 50/146 (34.25%), Postives = 77/146 (52.74%), Query Frame = 0
Query:  107 NSVTLVGRLGADPLFKVTSSGAELCTFSMAVTHDYDPTDSD-EDKTSWFDIEVWGSLAK-YASRAQKGVRVGVSGSLGFNCWTGRDGLEREDPIIRANTFEILQSRSEQRPYSRGHKENDGGRPPEPRSTSDSYPSLSGNLRDLPF 250
            N V LVG LG  P  +   SGA + + S+AVT  +   D + ++KT W  +E+W + A+    +A KG  + V G L    WT  +G +R++ I+ A TFEI++ R  + P  +G     G    +P+S+S S  +      DLPF
Sbjct:   15 NWVRLVGNLGKAPEIRYVPSGAAVVSPSIAVTESWKGRDGNWQEKTHWVQVELWEANAESLVKQAGKGSTLLVDGRLKNESWTDSEGNKRQNTILAAETFEIVE-RFSKAPKPQGQPVGVG----KPQSSSTSQDAFPPEEEDLPF 155          
BLAST of Ggra9161.t1 vs. uniprot
Match: A0A1F9E604 (Single-stranded DNA-binding protein n=2 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A1F9E604_9DELT)

HSP 1 Score: 71.6 bits (174), Expect = 4.930e-12
Identity = 39/106 (36.79%), Postives = 58/106 (54.72%), Query Frame = 0
Query:  106 INSVTLVGRLGADPLFKVTSSGAELCTFSMAVTHDY-DPTDSDEDKTSWFDIEVWGSLAKYASR-AQKGVRVGVSGSLGFNCWTGRDGLEREDPIIRANTFEILQS 209
            +N V LVGRLGADP  K TSS   +C F++A +  + D     +++T W  +  WG LA+  +   +KG +V V G L    W  ++G +R    + ANT + L S
Sbjct:    6 VNKVILVGRLGADPEMKYTSSSLGVCRFNLATSESWVDKEGQKKERTEWHRVVAWGKLAEICNEYLKKGRQVYVEGRLQTRSWDDKNGNKRYTTEVVANTVQFLGS 111          
BLAST of Ggra9161.t1 vs. uniprot
Match: A0A1I6Q520 (Single-stranded DNA-binding protein n=1 Tax=Sphingobacterium wenxiniae TaxID=683125 RepID=A0A1I6Q520_9SPHI)

HSP 1 Score: 70.9 bits (172), Expect = 6.120e-12
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 0
Query:  106 INSVTLVGRLGADPLFKVTSSGAELCTFSMAVTHDYDPTDSDE--DKTSWFDIEVWGSLA-KYASRAQKGVRVGVSGSLGFNCWTGRDGLEREDPIIRANTFEILQSRSE 212
            +NSV L+GRLGAD   K T+ G ++C   MA T++Y+     +  + T W  + VWG LA K     +KG R+ V GSL +  +     ++RE   IR N F +L   +E
Sbjct:    5 VNSVQLIGRLGADVEIKTTARGTKVCRIRMA-TNEYNKNSMGDWNETTHWHTLIVWGKLAEKLEKTGKKGSRLAVKGSLAYREYIDASDIKREVTEIRVNQFMLLDKATE 113          
BLAST of Ggra9161.t1 vs. uniprot
Match: A0A0A1ZRL7 (Single-stranded DNA-binding protein n=1 Tax=Prochlorococcus marinus str. MIT 9116 TaxID=167544 RepID=A0A0A1ZRL7_PROMR)

HSP 1 Score: 70.5 bits (171), Expect = 7.190e-12
Identity = 41/107 (38.32%), Postives = 60/107 (56.07%), Query Frame = 0
Query:  106 INSVTLVGRLGADPLFKVTSSGAELCTFSMAVTHDYDPTDSDEDKTSWFDIEVWGSLAKYA-SRAQKGVRVGVSGSLGFNCWTGRDGLE-REDPIIRANTFEILQSR 210
            INSV+LVGR GADP  K   SGA +  F++AV    D      +   WF++E+WG+ A+ A    +KG  VG+ G L    W+ R+  E R  P++R +   +L S+
Sbjct:    3 INSVSLVGRAGADPEIKNFDSGAMVTKFAIAVNRRKD------EMPDWFNLEIWGNQAQVAVDYVKKGSLVGIVGRLNIESWSDRNTNETRFRPVVRVDKLHLLGSK 103          
BLAST of Ggra9161.t1 vs. uniprot
Match: A0A2N2GNG0 (Single-stranded DNA-binding protein n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-22 TaxID=2013750 RepID=A0A2N2GNG0_9DELT)

HSP 1 Score: 70.5 bits (171), Expect = 1.480e-11
Identity = 48/146 (32.88%), Postives = 70/146 (47.95%), Query Frame = 0
Query:  106 INSVTLVGRLGADPLFKVTSSGAELCTFSMAVTHDYDPTDSDE-DKTSWFDIEVWGSLAKYASRA-QKGVRVGVSGSLGFNCWTGRDGLEREDPIIRANTFEILQSRSEQRPYSRGHKENDGGRPPEPRSTSDSYPSLSGNLRDLP 249
            +N V L+G LG DP+++VTS+   +  FS+A +  +   D +    T W  I VWG  A     + +KG +V V GSL    WT ++G +R    I+++    L  RS +        E D    P P +TS S  SL    R  P
Sbjct:    5 LNKVILIGNLGKDPVYRVTSNNRAVAEFSLATSESWKGDDGNRASHTEWHKIVVWGPAANAVRDSLKKGSKVYVEGSLRTRKWTDKEGKDRYTTEIQSSRVLFLSGRSSEGGGGYDGPETDM---PRPMTTSRSRASLQDFNRGTP 147          
BLAST of Ggra9161.t1 vs. uniprot
Match: A0A2H4ZPK0 (Single-stranded DNA-binding protein n=1 Tax=Paulinella longichromatophora TaxID=1708747 RepID=A0A2H4ZPK0_9EUKA)

HSP 1 Score: 69.7 bits (169), Expect = 1.500e-11
Identity = 42/119 (35.29%), Postives = 64/119 (53.78%), Query Frame = 0
Query:  106 INSVTLVGRLGADPLFKVTSSGAELCTFSMAVTHDYDPTDSDEDKTSWFDIEVWGSLAKYASR-AQKGVRVGVSGSLGFNCWTGRD-GLEREDPIIRANTFEILQSRSEQRPYSRGHKE 222
            INSV+LVG  G DP+ +   SG  +   S+AV+         +D+  WF++EVWG  AK  S   +KG  +G+ G L  + W  R+ G  R  P+I  +  ++L S+ E  P S G+ +
Sbjct:    3 INSVSLVGYAGRDPVVREFESGNVVANLSIAVSRR-----KSKDEPDWFNLEVWGKQAKVVSDYVRKGSLIGIVGKLKIDSWIDRNSGEPRSKPVITVDQLQLLGSKRE--PESNGYND 114          
BLAST of Ggra9161.t1 vs. uniprot
Match: A0A2N2ISC2 (Single-stranded DNA-binding protein n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-17 TaxID=2013744 RepID=A0A2N2ISC2_9DELT)

HSP 1 Score: 68.2 bits (165), Expect = 9.120e-11
Identity = 47/149 (31.54%), Postives = 70/149 (46.98%), Query Frame = 0
Query:  106 INSVTLVGRLGADPLFKVTSSGAELCTFSMAVTHDYDPTDSDE-DKTSWFDIEVWGSLAKYASRA-QKGVRVGVSGSLGFNCWTGRDGLEREDPIIRANTFEILQSRSEQRPYSRGHKENDGGRPPEPRSTSDSY--PSLSGNLRDLPF 250
            +N V L+G LG DP+++VTS    +  FS+A T  +   D +    T W  I VWG  A     + +KG +V V GSL    WT ++G +R    I+++    L  RS +     G + + GG        SD+Y          D+PF
Sbjct:    5 LNKVILIGNLGKDPVYRVTSGNRAVAEFSLATTESWKGDDGNRASHTEWHKIVVWGPAANAVRDSLKKGSKVYVEGSLRTRKWTDKEGKDRYTTEIQSSRVLFLSGRSSEGGGYDGPETDFGG--------SDNYGXXXXXXXXXDIPF 145          
The following BLAST results are available for this feature:
BLAST of Ggra9161.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IGY23.750e-7654.19Single-stranded DNA-binding protein n=1 Tax=Gracil... [more]
R7QGJ66.430e-3949.67Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A218QW282.430e-1338.14Single-stranded DNA-binding protein n=3 Tax=Tolypo... [more]
single-stranded DNA-binding protein n=1 Tax=Deinococcus roseus TaxID=392414 RepID=UPI001E4B06918.150e-1334.25single-stranded DNA-binding protein n=1 Tax=Deinoc... [more]
A0A1F9E6044.930e-1236.79Single-stranded DNA-binding protein n=2 Tax=unclas... [more]
A0A1I6Q5206.120e-1237.27Single-stranded DNA-binding protein n=1 Tax=Sphing... [more]
A0A0A1ZRL77.190e-1238.32Single-stranded DNA-binding protein n=1 Tax=Prochl... [more]
A0A2N2GNG01.480e-1132.88Single-stranded DNA-binding protein n=1 Tax=Deltap... [more]
A0A2H4ZPK01.500e-1135.29Single-stranded DNA-binding protein n=1 Tax=Paulin... [more]
A0A2N2ISC29.120e-1131.54Single-stranded DNA-binding protein n=1 Tax=Deltap... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011344Single-stranded DNA-binding proteinTIGRFAMTIGR00621TIGR00621coord: 105..224
e-value: 2.1E-24
score: 84.6
IPR011344Single-stranded DNA-binding proteinPANTHERPTHR10302SINGLE-STRANDED DNA-BINDING PROTEINcoord: 104..222
IPR000424Primosome PriB/single-strand DNA-bindingPFAMPF00436SSBcoord: 106..206
e-value: 9.6E-21
score: 73.8
IPR000424Primosome PriB/single-strand DNA-bindingPROSITEPS50935SSBcoord: 106..208
score: 24.074732
IPR000424Primosome PriB/single-strand DNA-bindingCDDcd04496SSB_OBFcoord: 109..207
e-value: 5.08106E-25
score: 93.0605
NoneNo IPR availableGENE3D2.40.50.140coord: 104..237
e-value: 2.1E-26
score: 94.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 209..250
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 214..229
NoneNo IPR availablePANTHERPTHR10302:SF19SINGLE-STRANDED DNA-BINDING PROTEIN 1coord: 104..222
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 106..250

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:269095..269847 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9161.t1Ggra9161.t1Gracilaria gracilis GNS1m malemRNAtig00000075_pilon 269095..269847 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9161.t1 ID=Ggra9161.t1|Name=Ggra9161.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=251bp
MVIGNCLQSGVSRGSGAFVQCPLGLPTGLNTASIIGQCCRNSFTGFKIVH
TKRKQRPISLPVNCQNLGYEEDEGIQIDEHLDSQWDFEIDEDELVEIEAN
PSIPQINSVTLVGRLGADPLFKVTSSGAELCTFSMAVTHDYDPTDSDEDK
TSWFDIEVWGSLAKYASRAQKGVRVGVSGSLGFNCWTGRDGLEREDPIIR
ANTFEILQSRSEQRPYSRGHKENDGGRPPEPRSTSDSYPSLSGNLRDLPF
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011344ssDNA-bd
IPR000424Primosome_PriB/ssb
IPR012340NA-bd_OB-fold