Ggra9245.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9245.t1
Unique NameGgra9245.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length329
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:570035..571021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_019210-tr
Preferred nameNGDN
PFAMsSas10_Utp3
Max annot lvl33208|Metazoa
KEGG koko:K14765
GOsGO:0000462,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
Evalue7.69e-17
EggNOG OGsKOG3117@1|root,KOG3117@2759|Eukaryota,38GU4@33154|Opisthokonta,3BHWF@33208|Metazoa,3CXS4@33213|Bilateria
Descriptionmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
COG categoryA
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9245Ggra9245Gracilaria gracilis GNS1m malegenetig00000075_pilon 570035..571021 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9245.t1.start1Ggra9245.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 570035..570037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9245.t1.CDS1Ggra9245.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 570035..571021 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9245.t1.exon1Ggra9245.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 570035..571021 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9245.t1.stop1Ggra9245.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 571019..571021 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9245.t1Ggra9245.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 570035..571021 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9245.t1 ID=Ggra9245.t1|Name=Ggra9245.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=329bp
MEVVEAINKLQELADDAKDHVQKVKSVTESAEGLENGISLLRAKSATLMH
YNALIIQFALARLLGKPVQPVVERLIEDWVILTKTAPLEKKLQYQIDTLL
RSASQDAANEADRHRPDPDAVVLDEDGEAESSDEERPYRAPRFTEVVYDG
DDENRMERIQKQKERHQARAIRSSEVQEMLATIQGRPEELFSNENLHTPS
AKRVIKEQKQREQFEEDNFVRLSQSKKSKKRTRREMDDAMTGAQGGGNGF
SGLTALADRVVKSTKGNSSVNGKAGAANRSKRHGVDEEEEIQRERQLDQI
VEDEEREIRLSNKRSSRSRGSARKKRRR*
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spliced messenger RNA

>Ggra9245.t1 ID=Ggra9245.t1|Name=Ggra9245.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=987bp|location=Sequence derived from alignment at tig00000075_pilon:570035..571021+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGTCGTGGAAGCGATAAATAAGCTTCAGGAGCTTGCTGATGATGC
AAAGGATCACGTACAGAAAGTCAAATCAGTCACCGAAAGCGCTGAAGGGC
TTGAGAACGGCATCTCACTTCTACGCGCCAAGTCAGCAACGCTCATGCAC
TACAATGCATTAATCATTCAATTCGCGCTCGCTCGTCTACTCGGAAAGCC
CGTGCAGCCTGTGGTAGAACGATTGATAGAAGACTGGGTTATTCTTACCA
AAACTGCGCCTCTAGAGAAGAAGTTACAATACCAGATCGACACGTTACTC
AGGAGTGCGTCTCAAGACGCTGCAAACGAAGCTGACAGACACCGCCCGGA
TCCAGACGCCGTGGTCCTGGACGAAGATGGAGAAGCTGAATCTAGCGACG
AAGAAAGACCATACAGAGCCCCACGCTTCACAGAGGTGGTTTATGACGGA
GATGATGAGAACCGTATGGAACGCATTCAGAAACAGAAGGAACGACACCA
AGCTCGCGCGATTCGAAGCTCGGAAGTTCAAGAAATGCTAGCAACGATTC
AAGGACGTCCTGAAGAGCTGTTCAGCAATGAGAACTTGCACACGCCTTCT
GCAAAACGGGTGATCAAAGAGCAAAAGCAGCGGGAACAATTTGAGGAAGA
TAACTTTGTGAGACTGTCGCAGTCGAAGAAGAGCAAGAAGCGAACCCGTC
GCGAGATGGACGATGCTATGACTGGAGCGCAAGGTGGAGGGAATGGCTTT
TCTGGTTTGACGGCACTGGCCGACCGTGTGGTTAAATCCACCAAGGGAAA
CAGCAGTGTGAATGGTAAGGCTGGGGCGGCGAACCGGAGTAAGCGGCACG
GTGTTGACGAGGAGGAGGAAATTCAGAGGGAGCGGCAACTAGATCAAATC
GTTGAAGATGAAGAGAGAGAGATCAGGCTCTCCAACAAGCGCTCCTCCCG
TTCACGAGGCTCAGCCCGAAAGAAGCGCCGAAGATGA
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protein sequence of Ggra9245.t1

>Ggra9245.t1 ID=Ggra9245.t1|Name=Ggra9245.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=329bp
MEVVEAINKLQELADDAKDHVQKVKSVTESAEGLENGISLLRAKSATLMH
YNALIIQFALARLLGKPVQPVVERLIEDWVILTKTAPLEKKLQYQIDTLL
RSASQDAANEADRHRPDPDAVVLDEDGEAESSDEERPYRAPRFTEVVYDG
DDENRMERIQKQKERHQARAIRSSEVQEMLATIQGRPEELFSNENLHTPS
AKRVIKEQKQREQFEEDNFVRLSQSKKSKKRTRREMDDAMTGAQGGGNGF
SGLTALADRVVKSTKGNSSVNGKAGAANRSKRHGVDEEEEIQRERQLDQI
VEDEEREIRLSNKRSSRSRGSARKKRRR*
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mRNA from alignment at tig00000075_pilon:570035..571021+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9245.t1 ID=Ggra9245.t1|Name=Ggra9245.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=987bp|location=Sequence derived from alignment at tig00000075_pilon:570035..571021+ (Gracilaria gracilis GNS1m male)
ATGGAAGTCGTGGAAGCGATAAATAAGCTTCAGGAGCTTGCTGATGATGC
AAAGGATCACGTACAGAAAGTCAAATCAGTCACCGAAAGCGCTGAAGGGC
TTGAGAACGGCATCTCACTTCTACGCGCCAAGTCAGCAACGCTCATGCAC
TACAATGCATTAATCATTCAATTCGCGCTCGCTCGTCTACTCGGAAAGCC
CGTGCAGCCTGTGGTAGAACGATTGATAGAAGACTGGGTTATTCTTACCA
AAACTGCGCCTCTAGAGAAGAAGTTACAATACCAGATCGACACGTTACTC
AGGAGTGCGTCTCAAGACGCTGCAAACGAAGCTGACAGACACCGCCCGGA
TCCAGACGCCGTGGTCCTGGACGAAGATGGAGAAGCTGAATCTAGCGACG
AAGAAAGACCATACAGAGCCCCACGCTTCACAGAGGTGGTTTATGACGGA
GATGATGAGAACCGTATGGAACGCATTCAGAAACAGAAGGAACGACACCA
AGCTCGCGCGATTCGAAGCTCGGAAGTTCAAGAAATGCTAGCAACGATTC
AAGGACGTCCTGAAGAGCTGTTCAGCAATGAGAACTTGCACACGCCTTCT
GCAAAACGGGTGATCAAAGAGCAAAAGCAGCGGGAACAATTTGAGGAAGA
TAACTTTGTGAGACTGTCGCAGTCGAAGAAGAGCAAGAAGCGAACCCGTC
GCGAGATGGACGATGCTATGACTGGAGCGCAAGGTGGAGGGAATGGCTTT
TCTGGTTTGACGGCACTGGCCGACCGTGTGGTTAAATCCACCAAGGGAAA
CAGCAGTGTGAATGGTAAGGCTGGGGCGGCGAACCGGAGTAAGCGGCACG
GTGTTGACGAGGAGGAGGAAATTCAGAGGGAGCGGCAACTAGATCAAATC
GTTGAAGATGAAGAGAGAGAGATCAGGCTCTCCAACAAGCGCTCCTCCCG
TTCACGAGGCTCAGCCCGAAAGAAGCGCCGAAGATGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:570035..571021+

>Ggra9245.t1 ID=Ggra9245.t1|Name=Ggra9245.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=987bp|location=Sequence derived from alignment at tig00000075_pilon:570035..571021+ (Gracilaria gracilis GNS1m male)
ATGGAAGTCGTGGAAGCGATAAATAAGCTTCAGGAGCTTGCTGATGATGC
AAAGGATCACGTACAGAAAGTCAAATCAGTCACCGAAAGCGCTGAAGGGC
TTGAGAACGGCATCTCACTTCTACGCGCCAAGTCAGCAACGCTCATGCAC
TACAATGCATTAATCATTCAATTCGCGCTCGCTCGTCTACTCGGAAAGCC
CGTGCAGCCTGTGGTAGAACGATTGATAGAAGACTGGGTTATTCTTACCA
AAACTGCGCCTCTAGAGAAGAAGTTACAATACCAGATCGACACGTTACTC
AGGAGTGCGTCTCAAGACGCTGCAAACGAAGCTGACAGACACCGCCCGGA
TCCAGACGCCGTGGTCCTGGACGAAGATGGAGAAGCTGAATCTAGCGACG
AAGAAAGACCATACAGAGCCCCACGCTTCACAGAGGTGGTTTATGACGGA
GATGATGAGAACCGTATGGAACGCATTCAGAAACAGAAGGAACGACACCA
AGCTCGCGCGATTCGAAGCTCGGAAGTTCAAGAAATGCTAGCAACGATTC
AAGGACGTCCTGAAGAGCTGTTCAGCAATGAGAACTTGCACACGCCTTCT
GCAAAACGGGTGATCAAAGAGCAAAAGCAGCGGGAACAATTTGAGGAAGA
TAACTTTGTGAGACTGTCGCAGTCGAAGAAGAGCAAGAAGCGAACCCGTC
GCGAGATGGACGATGCTATGACTGGAGCGCAAGGTGGAGGGAATGGCTTT
TCTGGTTTGACGGCACTGGCCGACCGTGTGGTTAAATCCACCAAGGGAAA
CAGCAGTGTGAATGGTAAGGCTGGGGCGGCGAACCGGAGTAAGCGGCACG
GTGTTGACGAGGAGGAGGAAATTCAGAGGGAGCGGCAACTAGATCAAATC
GTTGAAGATGAAGAGAGAGAGATCAGGCTCTCCAACAAGCGCTCCTCCCG
TTCACGAGGCTCAGCCCGAAAGAAGCGCCGAAGATGA
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