Ggra9206.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9206.t1
Unique Name	Ggra9206.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	556

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:384500..386167 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	67593.Physo138682
PFAMs	RHSP
Max annot lvl	4776\|Peronosporales
Evalue	1.25e-08
EggNOG OGs	2CT8K@1\|root,2RFBM@2759\|Eukaryota,3QGPG@4776\|Peronosporales

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9206	Ggra9206	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 384500..386167 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9206.t1.start1	Ggra9206.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 384500..384502 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9206.t1.CDS1	Ggra9206.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 384500..386167 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9206.t1.exon1	Ggra9206.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 384500..386167 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9206.t1.stop1	Ggra9206.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 386165..386167 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9206.t1	Ggra9206.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 384500..386167 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:384500..386167+
coding sequence from alignment at tig00000075_pilon:384500..386167+

mRNA sequence

>Ggra9206.t1 ID=Ggra9206.t1|Name=Ggra9206.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=556bp
MLSRTSVCSLSILLGNISRQYRIRNFGEQLNNASTLIPAAVEYPTLFNSF
APHFAEDPRIGKQVASFERAVKQKVSDSIDVIRTDSPIEGIGCALCPHLI
FVRRRIHDALLTAIRKRLHAVVVGNPGIGKSVFQQYYLARIFNEQLFGPL
PDDYFGNTNPPEVVVRQIGASLTELYFVPERKYVIFQRSPEVLLRAFKPE
RTLLLFEPGHDVCEPVWSPQIPTSAYVSPSSSRYKEFVKRGARKLYNPVW
DLDEILCVAEIMRSESSFPDAMQSFYKDAEVEKRFKEFGGIFRYCLPQHP
EVLLDARGKRKEALQEAGRSSLIRFETIEHPEVSHHLAHFEVDVTGPDPF
GKATIDLVNDNVENELKREWLLVSLLDKIRALMRNDETGYMDKACQDLFE
DVLAEVLMRKVAWRQRVVVGGHVAREDGVLFSSGYLLRRIDGIVPKFEDM
DERVLYVPLKRNFPLADMVWRCGDLLFMANAARQNSGSKRVAGVEAFVNE
LCVPHGLKVCLYIVPKHDMFTRLNVEVPLTARKLVNLEVVILEMPKDYGA
STFGY*

spliced messenger RNA

>Ggra9206.t1 ID=Ggra9206.t1|Name=Ggra9206.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1668bp|location=Sequence derived from alignment at tig00000075_pilon:384500..386167+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTCACGAACCTCCGTCTGCTCGCTCAGTATTCTTCTCGGCAACAT
TTCTCGGCAATACCGCATTAGAAATTTTGGTGAACAACTTAACAACGCAT
CCACTCTAATACCGGCCGCTGTAGAGTATCCAACCTTGTTTAACAGCTTT
GCGCCCCATTTTGCTGAAGATCCACGCATTGGCAAACAAGTTGCGTCCTT
TGAACGAGCTGTGAAACAAAAAGTCTCGGATTCGATCGACGTTATTCGAA
CTGACTCTCCAATTGAGGGTATTGGATGTGCTCTCTGTCCACACCTAATT
TTTGTGCGCCGTCGAATCCATGATGCTCTGCTGACCGCAATTCGAAAGCG
ATTGCATGCTGTTGTTGTTGGAAACCCTGGAATAGGCAAGAGCGTTTTCC
AACAGTACTACCTTGCTCGCATTTTCAATGAACAATTGTTTGGGCCCCTG
CCAGACGACTACTTTGGGAACACTAATCCTCCGGAAGTCGTGGTACGACA
AATCGGTGCAAGTCTTACCGAGTTGTATTTTGTGCCGGAGCGGAAGTATG
TTATATTTCAAAGAAGCCCTGAAGTTCTACTTCGCGCTTTCAAACCGGAG
CGCACCCTTCTTCTTTTCGAGCCCGGCCATGACGTCTGTGAACCTGTATG
GTCTCCCCAAATTCCGACATCAGCGTATGTCTCTCCAAGTAGCTCACGGT
ACAAAGAATTCGTGAAAAGAGGAGCTCGAAAGCTCTACAATCCCGTATGG
GATCTTGACGAAATCCTCTGTGTCGCTGAGATTATGCGGTCCGAGTCATC
TTTTCCGGACGCAATGCAAAGTTTCTATAAAGACGCAGAAGTAGAAAAGC
GCTTCAAAGAATTCGGCGGCATTTTTCGGTACTGCCTTCCACAGCATCCT
GAAGTTCTTTTGGATGCGAGGGGAAAGCGAAAGGAAGCACTTCAAGAGGC
TGGAAGGAGTAGCCTAATTCGATTTGAAACTATCGAACATCCAGAGGTCA
GCCACCATTTGGCGCATTTCGAGGTCGACGTCACTGGACCGGACCCATTT
GGGAAAGCCACAATCGATCTTGTGAACGACAACGTTGAGAACGAGCTCAA
ACGTGAATGGTTATTAGTGTCTCTACTTGACAAAATCCGGGCTCTAATGC
GCAATGACGAGACGGGTTATATGGACAAAGCATGTCAAGACCTGTTTGAG
GATGTTCTTGCTGAAGTTCTTATGCGCAAGGTGGCTTGGCGTCAAAGGGT
GGTAGTGGGTGGACATGTTGCCCGAGAAGATGGAGTTCTATTTTCAAGCG
GGTACTTGTTAAGGCGGATTGATGGAATTGTGCCCAAGTTTGAGGATATG
GATGAGCGAGTGTTGTATGTACCATTGAAGAGGAATTTTCCACTAGCAGA
TATGGTGTGGCGATGTGGTGATTTACTTTTCATGGCAAACGCGGCCCGTC
AAAACAGCGGCTCGAAACGAGTTGCCGGCGTAGAAGCATTTGTGAATGAA
TTATGTGTCCCTCACGGCTTGAAAGTTTGTCTATACATTGTGCCAAAACA
CGATATGTTTACCAGGCTCAACGTAGAGGTGCCGTTGACGGCGCGAAAGC
TGGTCAATTTGGAAGTGGTGATCCTGGAAATGCCGAAGGACTACGGCGCG
AGCACATTTGGATACTAA

protein sequence of Ggra9206.t1

>Ggra9206.t1 ID=Ggra9206.t1|Name=Ggra9206.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=556bp
MLSRTSVCSLSILLGNISRQYRIRNFGEQLNNASTLIPAAVEYPTLFNSF
APHFAEDPRIGKQVASFERAVKQKVSDSIDVIRTDSPIEGIGCALCPHLI
FVRRRIHDALLTAIRKRLHAVVVGNPGIGKSVFQQYYLARIFNEQLFGPL
PDDYFGNTNPPEVVVRQIGASLTELYFVPERKYVIFQRSPEVLLRAFKPE
RTLLLFEPGHDVCEPVWSPQIPTSAYVSPSSSRYKEFVKRGARKLYNPVW
DLDEILCVAEIMRSESSFPDAMQSFYKDAEVEKRFKEFGGIFRYCLPQHP
EVLLDARGKRKEALQEAGRSSLIRFETIEHPEVSHHLAHFEVDVTGPDPF
GKATIDLVNDNVENELKREWLLVSLLDKIRALMRNDETGYMDKACQDLFE
DVLAEVLMRKVAWRQRVVVGGHVAREDGVLFSSGYLLRRIDGIVPKFEDM
DERVLYVPLKRNFPLADMVWRCGDLLFMANAARQNSGSKRVAGVEAFVNE
LCVPHGLKVCLYIVPKHDMFTRLNVEVPLTARKLVNLEVVILEMPKDYGA
STFGY*

mRNA from alignment at tig00000075_pilon:384500..386167+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9206.t1 ID=Ggra9206.t1|Name=Ggra9206.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1668bp|location=Sequence derived from alignment at tig00000075_pilon:384500..386167+ (Gracilaria gracilis GNS1m male)
ATGCTCTCACGAACCTCCGTCTGCTCGCTCAGTATTCTTCTCGGCAACAT
TTCTCGGCAATACCGCATTAGAAATTTTGGTGAACAACTTAACAACGCAT
CCACTCTAATACCGGCCGCTGTAGAGTATCCAACCTTGTTTAACAGCTTT
GCGCCCCATTTTGCTGAAGATCCACGCATTGGCAAACAAGTTGCGTCCTT
TGAACGAGCTGTGAAACAAAAAGTCTCGGATTCGATCGACGTTATTCGAA
CTGACTCTCCAATTGAGGGTATTGGATGTGCTCTCTGTCCACACCTAATT
TTTGTGCGCCGTCGAATCCATGATGCTCTGCTGACCGCAATTCGAAAGCG
ATTGCATGCTGTTGTTGTTGGAAACCCTGGAATAGGCAAGAGCGTTTTCC
AACAGTACTACCTTGCTCGCATTTTCAATGAACAATTGTTTGGGCCCCTG
CCAGACGACTACTTTGGGAACACTAATCCTCCGGAAGTCGTGGTACGACA
AATCGGTGCAAGTCTTACCGAGTTGTATTTTGTGCCGGAGCGGAAGTATG
TTATATTTCAAAGAAGCCCTGAAGTTCTACTTCGCGCTTTCAAACCGGAG
CGCACCCTTCTTCTTTTCGAGCCCGGCCATGACGTCTGTGAACCTGTATG
GTCTCCCCAAATTCCGACATCAGCGTATGTCTCTCCAAGTAGCTCACGGT
ACAAAGAATTCGTGAAAAGAGGAGCTCGAAAGCTCTACAATCCCGTATGG
GATCTTGACGAAATCCTCTGTGTCGCTGAGATTATGCGGTCCGAGTCATC
TTTTCCGGACGCAATGCAAAGTTTCTATAAAGACGCAGAAGTAGAAAAGC
GCTTCAAAGAATTCGGCGGCATTTTTCGGTACTGCCTTCCACAGCATCCT
GAAGTTCTTTTGGATGCGAGGGGAAAGCGAAAGGAAGCACTTCAAGAGGC
TGGAAGGAGTAGCCTAATTCGATTTGAAACTATCGAACATCCAGAGGTCA
GCCACCATTTGGCGCATTTCGAGGTCGACGTCACTGGACCGGACCCATTT
GGGAAAGCCACAATCGATCTTGTGAACGACAACGTTGAGAACGAGCTCAA
ACGTGAATGGTTATTAGTGTCTCTACTTGACAAAATCCGGGCTCTAATGC
GCAATGACGAGACGGGTTATATGGACAAAGCATGTCAAGACCTGTTTGAG
GATGTTCTTGCTGAAGTTCTTATGCGCAAGGTGGCTTGGCGTCAAAGGGT
GGTAGTGGGTGGACATGTTGCCCGAGAAGATGGAGTTCTATTTTCAAGCG
GGTACTTGTTAAGGCGGATTGATGGAATTGTGCCCAAGTTTGAGGATATG
GATGAGCGAGTGTTGTATGTACCATTGAAGAGGAATTTTCCACTAGCAGA
TATGGTGTGGCGATGTGGTGATTTACTTTTCATGGCAAACGCGGCCCGTC
AAAACAGCGGCTCGAAACGAGTTGCCGGCGTAGAAGCATTTGTGAATGAA
TTATGTGTCCCTCACGGCTTGAAAGTTTGTCTATACATTGTGCCAAAACA
CGATATGTTTACCAGGCTCAACGTAGAGGTGCCGTTGACGGCGCGAAAGC
TGGTCAATTTGGAAGTGGTGATCCTGGAAATGCCGAAGGACTACGGCGCG
AGCACATTTGGATACTAA

Coding sequence (CDS) from alignment at tig00000075_pilon:384500..386167+

>Ggra9206.t1 ID=Ggra9206.t1|Name=Ggra9206.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1668bp|location=Sequence derived from alignment at tig00000075_pilon:384500..386167+ (Gracilaria gracilis GNS1m male)
ATGCTCTCACGAACCTCCGTCTGCTCGCTCAGTATTCTTCTCGGCAACAT
TTCTCGGCAATACCGCATTAGAAATTTTGGTGAACAACTTAACAACGCAT
CCACTCTAATACCGGCCGCTGTAGAGTATCCAACCTTGTTTAACAGCTTT
GCGCCCCATTTTGCTGAAGATCCACGCATTGGCAAACAAGTTGCGTCCTT
TGAACGAGCTGTGAAACAAAAAGTCTCGGATTCGATCGACGTTATTCGAA
CTGACTCTCCAATTGAGGGTATTGGATGTGCTCTCTGTCCACACCTAATT
TTTGTGCGCCGTCGAATCCATGATGCTCTGCTGACCGCAATTCGAAAGCG
ATTGCATGCTGTTGTTGTTGGAAACCCTGGAATAGGCAAGAGCGTTTTCC
AACAGTACTACCTTGCTCGCATTTTCAATGAACAATTGTTTGGGCCCCTG
CCAGACGACTACTTTGGGAACACTAATCCTCCGGAAGTCGTGGTACGACA
AATCGGTGCAAGTCTTACCGAGTTGTATTTTGTGCCGGAGCGGAAGTATG
TTATATTTCAAAGAAGCCCTGAAGTTCTACTTCGCGCTTTCAAACCGGAG
CGCACCCTTCTTCTTTTCGAGCCCGGCCATGACGTCTGTGAACCTGTATG
GTCTCCCCAAATTCCGACATCAGCGTATGTCTCTCCAAGTAGCTCACGGT
ACAAAGAATTCGTGAAAAGAGGAGCTCGAAAGCTCTACAATCCCGTATGG
GATCTTGACGAAATCCTCTGTGTCGCTGAGATTATGCGGTCCGAGTCATC
TTTTCCGGACGCAATGCAAAGTTTCTATAAAGACGCAGAAGTAGAAAAGC
GCTTCAAAGAATTCGGCGGCATTTTTCGGTACTGCCTTCCACAGCATCCT
GAAGTTCTTTTGGATGCGAGGGGAAAGCGAAAGGAAGCACTTCAAGAGGC
TGGAAGGAGTAGCCTAATTCGATTTGAAACTATCGAACATCCAGAGGTCA
GCCACCATTTGGCGCATTTCGAGGTCGACGTCACTGGACCGGACCCATTT
GGGAAAGCCACAATCGATCTTGTGAACGACAACGTTGAGAACGAGCTCAA
ACGTGAATGGTTATTAGTGTCTCTACTTGACAAAATCCGGGCTCTAATGC
GCAATGACGAGACGGGTTATATGGACAAAGCATGTCAAGACCTGTTTGAG
GATGTTCTTGCTGAAGTTCTTATGCGCAAGGTGGCTTGGCGTCAAAGGGT
GGTAGTGGGTGGACATGTTGCCCGAGAAGATGGAGTTCTATTTTCAAGCG
GGTACTTGTTAAGGCGGATTGATGGAATTGTGCCCAAGTTTGAGGATATG
GATGAGCGAGTGTTGTATGTACCATTGAAGAGGAATTTTCCACTAGCAGA
TATGGTGTGGCGATGTGGTGATTTACTTTTCATGGCAAACGCGGCCCGTC
AAAACAGCGGCTCGAAACGAGTTGCCGGCGTAGAAGCATTTGTGAATGAA
TTATGTGTCCCTCACGGCTTGAAAGTTTGTCTATACATTGTGCCAAAACA
CGATATGTTTACCAGGCTCAACGTAGAGGTGCCGTTGACGGCGCGAAAGC
TGGTCAATTTGGAAGTGGTGATCCTGGAAATGCCGAAGGACTACGGCGCG
AGCACATTTGGATACTAA