Ggra9169.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9169.t1
Unique Name	Ggra9169.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	392

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:285332..286507 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9169	Ggra9169	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 285332..286507 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9169.t1.start1	Ggra9169.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 285332..285334 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9169.t1.CDS1	Ggra9169.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 285332..286507 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9169.t1.exon1	Ggra9169.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 285332..286507 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9169.t1.stop1	Ggra9169.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 286505..286507 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9169.t1	Ggra9169.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 285332..286507 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:285332..286507+
coding sequence from alignment at tig00000075_pilon:285332..286507+

mRNA sequence

>Ggra9169.t1 ID=Ggra9169.t1|Name=Ggra9169.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=392bp
MLLLDGLFDTDLDAQLHSLSQHSSRTQVLSQSAALRPKACHPSSHLLPYT
RYTLFVPHLKCGWASMLVDALWRLLRLRLEPLHADVTPAEAPTFYPPLPA
YVSRPNEDTLEAIRDNAGNILPRIACYVKLCYLNMLCRSMRDEQKALQRW
LSSVEMPDPPILQLPIPPPRRSRPVLVDAHVVRASDGCVYAYLLGGVLVR
TSLYPHVVELLKSYNILVRGPSESIPVAASLCSLSNSASSRVLEKTIPRA
RGPSHGFVALQTYVRERLATSWTFLCRRVLQHATYLSAEREEKRRSAAIS
RLTTVLHKATTLREQLVQQALRFEMIGKPLTDIAAFAVALYRDHEWERIF
NGFSEEYCRDLQNARSRVKQLTSLDTYDVTTLVEMHKDGRR*

spliced messenger RNA

>Ggra9169.t1 ID=Ggra9169.t1|Name=Ggra9169.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1176bp|location=Sequence derived from alignment at tig00000075_pilon:285332..286507+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCTACTCGACGGCCTGTTCGATACCGACTTGGACGCACAGCTGCA
CAGCCTCTCGCAGCATTCCTCAAGGACCCAAGTGCTTTCGCAGTCGGCCG
CCCTCCGTCCCAAAGCCTGCCACCCGTCGTCCCATCTCCTTCCCTACACC
CGTTACACGCTTTTCGTCCCACATCTGAAATGCGGCTGGGCAAGCATGCT
CGTCGACGCCCTTTGGCGTCTGCTCCGCTTACGACTCGAGCCGCTCCACG
CTGACGTTACCCCCGCTGAGGCTCCCACCTTCTACCCACCTTTGCCCGCC
TACGTTTCGCGCCCAAATGAGGATACGCTTGAAGCTATCAGAGACAATGC
TGGAAACATCTTACCGCGTATCGCCTGTTATGTCAAGCTGTGTTATCTCA
ACATGCTGTGTCGTTCGATGCGCGATGAGCAAAAGGCTCTTCAACGATGG
TTATCTTCTGTCGAGATGCCAGATCCTCCGATTCTGCAACTACCAATCCC
CCCGCCGCGTCGTTCGCGTCCTGTCCTTGTAGATGCCCATGTAGTGCGCG
CCTCAGATGGTTGTGTGTACGCCTATTTGCTTGGCGGAGTTTTGGTGCGC
ACGTCCCTATATCCCCATGTGGTTGAGCTCTTGAAATCATACAACATTCT
AGTGCGCGGCCCCTCGGAATCCATTCCAGTAGCTGCGTCGTTGTGCTCTC
TGTCCAATTCTGCATCTTCGCGCGTTCTCGAGAAGACCATCCCACGCGCT
CGGGGCCCGTCGCATGGATTTGTAGCCTTGCAGACGTACGTAAGGGAGCG
TCTTGCTACTTCGTGGACCTTCCTGTGCAGGCGAGTATTGCAGCATGCCA
CATACTTGTCTGCAGAACGGGAAGAGAAACGCCGTTCAGCTGCAATCTCA
CGTCTAACAACGGTCTTGCATAAAGCAACCACGCTCCGCGAACAGCTTGT
GCAACAGGCTCTGCGCTTCGAAATGATAGGAAAGCCTCTTACTGATATCG
CAGCTTTCGCTGTTGCTTTGTATCGCGATCATGAATGGGAGCGCATATTC
AATGGATTCTCAGAAGAGTATTGTAGGGATCTACAGAATGCAAGATCCAG
GGTCAAACAACTCACATCTCTGGACACATACGACGTAACTACGCTGGTAG
AAATGCACAAAGACGGTAGGAGGTGA

protein sequence of Ggra9169.t1

>Ggra9169.t1 ID=Ggra9169.t1|Name=Ggra9169.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=392bp
MLLLDGLFDTDLDAQLHSLSQHSSRTQVLSQSAALRPKACHPSSHLLPYT
RYTLFVPHLKCGWASMLVDALWRLLRLRLEPLHADVTPAEAPTFYPPLPA
YVSRPNEDTLEAIRDNAGNILPRIACYVKLCYLNMLCRSMRDEQKALQRW
LSSVEMPDPPILQLPIPPPRRSRPVLVDAHVVRASDGCVYAYLLGGVLVR
TSLYPHVVELLKSYNILVRGPSESIPVAASLCSLSNSASSRVLEKTIPRA
RGPSHGFVALQTYVRERLATSWTFLCRRVLQHATYLSAEREEKRRSAAIS
RLTTVLHKATTLREQLVQQALRFEMIGKPLTDIAAFAVALYRDHEWERIF
NGFSEEYCRDLQNARSRVKQLTSLDTYDVTTLVEMHKDGRR*

mRNA from alignment at tig00000075_pilon:285332..286507+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9169.t1 ID=Ggra9169.t1|Name=Ggra9169.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1176bp|location=Sequence derived from alignment at tig00000075_pilon:285332..286507+ (Gracilaria gracilis GNS1m male)
ATGCTGCTACTCGACGGCCTGTTCGATACCGACTTGGACGCACAGCTGCA
CAGCCTCTCGCAGCATTCCTCAAGGACCCAAGTGCTTTCGCAGTCGGCCG
CCCTCCGTCCCAAAGCCTGCCACCCGTCGTCCCATCTCCTTCCCTACACC
CGTTACACGCTTTTCGTCCCACATCTGAAATGCGGCTGGGCAAGCATGCT
CGTCGACGCCCTTTGGCGTCTGCTCCGCTTACGACTCGAGCCGCTCCACG
CTGACGTTACCCCCGCTGAGGCTCCCACCTTCTACCCACCTTTGCCCGCC
TACGTTTCGCGCCCAAATGAGGATACGCTTGAAGCTATCAGAGACAATGC
TGGAAACATCTTACCGCGTATCGCCTGTTATGTCAAGCTGTGTTATCTCA
ACATGCTGTGTCGTTCGATGCGCGATGAGCAAAAGGCTCTTCAACGATGG
TTATCTTCTGTCGAGATGCCAGATCCTCCGATTCTGCAACTACCAATCCC
CCCGCCGCGTCGTTCGCGTCCTGTCCTTGTAGATGCCCATGTAGTGCGCG
CCTCAGATGGTTGTGTGTACGCCTATTTGCTTGGCGGAGTTTTGGTGCGC
ACGTCCCTATATCCCCATGTGGTTGAGCTCTTGAAATCATACAACATTCT
AGTGCGCGGCCCCTCGGAATCCATTCCAGTAGCTGCGTCGTTGTGCTCTC
TGTCCAATTCTGCATCTTCGCGCGTTCTCGAGAAGACCATCCCACGCGCT
CGGGGCCCGTCGCATGGATTTGTAGCCTTGCAGACGTACGTAAGGGAGCG
TCTTGCTACTTCGTGGACCTTCCTGTGCAGGCGAGTATTGCAGCATGCCA
CATACTTGTCTGCAGAACGGGAAGAGAAACGCCGTTCAGCTGCAATCTCA
CGTCTAACAACGGTCTTGCATAAAGCAACCACGCTCCGCGAACAGCTTGT
GCAACAGGCTCTGCGCTTCGAAATGATAGGAAAGCCTCTTACTGATATCG
CAGCTTTCGCTGTTGCTTTGTATCGCGATCATGAATGGGAGCGCATATTC
AATGGATTCTCAGAAGAGTATTGTAGGGATCTACAGAATGCAAGATCCAG
GGTCAAACAACTCACATCTCTGGACACATACGACGTAACTACGCTGGTAG
AAATGCACAAAGACGGTAGGAGGTGA

Coding sequence (CDS) from alignment at tig00000075_pilon:285332..286507+

>Ggra9169.t1 ID=Ggra9169.t1|Name=Ggra9169.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1176bp|location=Sequence derived from alignment at tig00000075_pilon:285332..286507+ (Gracilaria gracilis GNS1m male)
ATGCTGCTACTCGACGGCCTGTTCGATACCGACTTGGACGCACAGCTGCA
CAGCCTCTCGCAGCATTCCTCAAGGACCCAAGTGCTTTCGCAGTCGGCCG
CCCTCCGTCCCAAAGCCTGCCACCCGTCGTCCCATCTCCTTCCCTACACC
CGTTACACGCTTTTCGTCCCACATCTGAAATGCGGCTGGGCAAGCATGCT
CGTCGACGCCCTTTGGCGTCTGCTCCGCTTACGACTCGAGCCGCTCCACG
CTGACGTTACCCCCGCTGAGGCTCCCACCTTCTACCCACCTTTGCCCGCC
TACGTTTCGCGCCCAAATGAGGATACGCTTGAAGCTATCAGAGACAATGC
TGGAAACATCTTACCGCGTATCGCCTGTTATGTCAAGCTGTGTTATCTCA
ACATGCTGTGTCGTTCGATGCGCGATGAGCAAAAGGCTCTTCAACGATGG
TTATCTTCTGTCGAGATGCCAGATCCTCCGATTCTGCAACTACCAATCCC
CCCGCCGCGTCGTTCGCGTCCTGTCCTTGTAGATGCCCATGTAGTGCGCG
CCTCAGATGGTTGTGTGTACGCCTATTTGCTTGGCGGAGTTTTGGTGCGC
ACGTCCCTATATCCCCATGTGGTTGAGCTCTTGAAATCATACAACATTCT
AGTGCGCGGCCCCTCGGAATCCATTCCAGTAGCTGCGTCGTTGTGCTCTC
TGTCCAATTCTGCATCTTCGCGCGTTCTCGAGAAGACCATCCCACGCGCT
CGGGGCCCGTCGCATGGATTTGTAGCCTTGCAGACGTACGTAAGGGAGCG
TCTTGCTACTTCGTGGACCTTCCTGTGCAGGCGAGTATTGCAGCATGCCA
CATACTTGTCTGCAGAACGGGAAGAGAAACGCCGTTCAGCTGCAATCTCA
CGTCTAACAACGGTCTTGCATAAAGCAACCACGCTCCGCGAACAGCTTGT
GCAACAGGCTCTGCGCTTCGAAATGATAGGAAAGCCTCTTACTGATATCG
CAGCTTTCGCTGTTGCTTTGTATCGCGATCATGAATGGGAGCGCATATTC
AATGGATTCTCAGAAGAGTATTGTAGGGATCTACAGAATGCAAGATCCAG
GGTCAAACAACTCACATCTCTGGACACATACGACGTAACTACGCTGGTAG
AAATGCACAAAGACGGTAGGAGGTGA