Ggra9138.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9138.t1
Unique NameGgra9138.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length418
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:81496..82749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703965.1
Preferred nameRMND5A
PFAMsCLTH,zf-RING_UBOX
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019538,GO:0019941,GO:0030163,GO:0032991,GO:0034657,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0051603,GO:0071704,GO:1901564,GO:1901565,GO:1901575
Evalue3.23e-76
EggNOG OGsCOG5109@1|root,KOG2817@2759|Eukaryota
Descriptionproteasome-mediated ubiquitin-dependent protein catabolic process
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9138Ggra9138Gracilaria gracilis GNS1m malegenetig00000075_pilon 81496..82749 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9138.t1.start1Ggra9138.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 81496..81498 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9138.t1.CDS1Ggra9138.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 81496..82749 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9138.t1.exon1Ggra9138.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 81496..82749 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9138.t1.stop1Ggra9138.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 82747..82749 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9138.t1Ggra9138.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 81496..82749 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9138.t1 ID=Ggra9138.t1|Name=Ggra9138.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=418bp
MDPILNEYAAMLRRHHKATRAAESAIDSMLSTLRALRLALDQDGAAQTVA
NTDAVKEEPELQPEQHDPMHVDHAHHSPSNSEHDSLSFVLHRLQMLFCAS
KSLQSSLLTDHKSVGAAINKFGKTIDSATASNLGDLCAPSVRLNTCKIND
AIAAHLFREGLFDVGRKFLLEAAVLLDDRHIQPFEQLYHILKAFRNNHLA
PAIEWAQANHQLLLQSNSHLEFRLHRLAYLHLLQQDRRAEALQYAQRHFC
NFQHHIASVQKLMTCLLYAPSLSKSPYKALVSPSHKEDIERSLSREYCRA
QGLPRDSLLVTVIHCGSKAIPMLLKASRVAPNLQELGMDDALPVEVDIGR
HCQFHSIFTCPVSKEEAYEGNNVPMMLPCGHVLCKQTITRLPRGSPRFKC
PYCPMEQNAKECHEIHF*
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spliced messenger RNA

>Ggra9138.t1 ID=Ggra9138.t1|Name=Ggra9138.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1254bp|location=Sequence derived from alignment at tig00000075_pilon:81496..82749+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCCCATTCTGAACGAGTACGCCGCTATGCTGCGCCGCCATCACAA
GGCCACGCGCGCCGCCGAGAGTGCCATCGACTCCATGCTGTCCACGCTGC
GCGCGCTTAGACTGGCGCTTGATCAAGATGGTGCCGCGCAAACTGTTGCC
AACACCGACGCTGTCAAGGAAGAGCCTGAGCTACAACCTGAGCAGCACGA
CCCCATGCATGTTGACCACGCGCATCATTCGCCTTCCAATTCAGAGCACG
ACTCGCTGTCGTTTGTGTTGCACCGACTGCAGATGCTTTTCTGCGCCTCA
AAGTCGCTGCAAAGCTCGTTGCTCACGGACCACAAGTCCGTTGGAGCCGC
TATCAACAAGTTTGGCAAGACAATAGACTCTGCTACCGCGTCCAATCTCG
GCGACTTGTGTGCACCTTCCGTGCGTCTCAACACGTGCAAGATTAACGAC
GCCATTGCGGCGCACCTGTTTCGCGAGGGGCTGTTCGACGTTGGACGCAA
GTTCCTGTTGGAAGCAGCCGTACTTTTGGATGACCGTCACATCCAACCTT
TTGAACAACTGTACCACATTCTCAAAGCGTTTCGTAACAATCATCTTGCT
CCGGCCATCGAATGGGCGCAGGCCAACCATCAACTGTTGCTGCAGTCCAA
CTCCCATCTCGAGTTCCGTCTGCACCGGCTGGCGTACCTGCATCTGCTTC
AACAAGATCGAAGGGCCGAGGCGTTGCAATACGCACAGCGTCATTTCTGT
AATTTTCAACATCACATTGCCAGCGTTCAGAAACTCATGACTTGTCTACT
CTACGCACCGTCACTGTCCAAGTCGCCGTACAAGGCGTTGGTGTCGCCGT
CGCATAAGGAGGACATTGAACGCTCGCTGTCACGCGAGTATTGCCGCGCC
CAGGGTCTTCCTCGCGATTCCCTGCTTGTCACAGTCATTCACTGCGGGTC
CAAGGCAATTCCAATGCTGCTCAAAGCCTCAAGGGTAGCTCCGAATCTCC
AGGAATTGGGCATGGACGATGCATTACCGGTTGAGGTGGATATTGGCAGA
CACTGCCAGTTTCATTCCATCTTCACCTGTCCCGTTTCCAAGGAGGAGGC
TTATGAAGGAAACAATGTGCCAATGATGCTACCATGCGGCCACGTTTTGT
GCAAACAGACCATTACTCGACTGCCACGAGGAAGTCCGAGGTTCAAGTGT
CCGTACTGCCCTATGGAACAGAATGCGAAGGAGTGCCATGAGATTCACTT
TTGA
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protein sequence of Ggra9138.t1

>Ggra9138.t1 ID=Ggra9138.t1|Name=Ggra9138.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=418bp
MDPILNEYAAMLRRHHKATRAAESAIDSMLSTLRALRLALDQDGAAQTVA
NTDAVKEEPELQPEQHDPMHVDHAHHSPSNSEHDSLSFVLHRLQMLFCAS
KSLQSSLLTDHKSVGAAINKFGKTIDSATASNLGDLCAPSVRLNTCKIND
AIAAHLFREGLFDVGRKFLLEAAVLLDDRHIQPFEQLYHILKAFRNNHLA
PAIEWAQANHQLLLQSNSHLEFRLHRLAYLHLLQQDRRAEALQYAQRHFC
NFQHHIASVQKLMTCLLYAPSLSKSPYKALVSPSHKEDIERSLSREYCRA
QGLPRDSLLVTVIHCGSKAIPMLLKASRVAPNLQELGMDDALPVEVDIGR
HCQFHSIFTCPVSKEEAYEGNNVPMMLPCGHVLCKQTITRLPRGSPRFKC
PYCPMEQNAKECHEIHF*
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mRNA from alignment at tig00000075_pilon:81496..82749+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9138.t1 ID=Ggra9138.t1|Name=Ggra9138.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1254bp|location=Sequence derived from alignment at tig00000075_pilon:81496..82749+ (Gracilaria gracilis GNS1m male)
ATGGACCCCATTCTGAACGAGTACGCCGCTATGCTGCGCCGCCATCACAA
GGCCACGCGCGCCGCCGAGAGTGCCATCGACTCCATGCTGTCCACGCTGC
GCGCGCTTAGACTGGCGCTTGATCAAGATGGTGCCGCGCAAACTGTTGCC
AACACCGACGCTGTCAAGGAAGAGCCTGAGCTACAACCTGAGCAGCACGA
CCCCATGCATGTTGACCACGCGCATCATTCGCCTTCCAATTCAGAGCACG
ACTCGCTGTCGTTTGTGTTGCACCGACTGCAGATGCTTTTCTGCGCCTCA
AAGTCGCTGCAAAGCTCGTTGCTCACGGACCACAAGTCCGTTGGAGCCGC
TATCAACAAGTTTGGCAAGACAATAGACTCTGCTACCGCGTCCAATCTCG
GCGACTTGTGTGCACCTTCCGTGCGTCTCAACACGTGCAAGATTAACGAC
GCCATTGCGGCGCACCTGTTTCGCGAGGGGCTGTTCGACGTTGGACGCAA
GTTCCTGTTGGAAGCAGCCGTACTTTTGGATGACCGTCACATCCAACCTT
TTGAACAACTGTACCACATTCTCAAAGCGTTTCGTAACAATCATCTTGCT
CCGGCCATCGAATGGGCGCAGGCCAACCATCAACTGTTGCTGCAGTCCAA
CTCCCATCTCGAGTTCCGTCTGCACCGGCTGGCGTACCTGCATCTGCTTC
AACAAGATCGAAGGGCCGAGGCGTTGCAATACGCACAGCGTCATTTCTGT
AATTTTCAACATCACATTGCCAGCGTTCAGAAACTCATGACTTGTCTACT
CTACGCACCGTCACTGTCCAAGTCGCCGTACAAGGCGTTGGTGTCGCCGT
CGCATAAGGAGGACATTGAACGCTCGCTGTCACGCGAGTATTGCCGCGCC
CAGGGTCTTCCTCGCGATTCCCTGCTTGTCACAGTCATTCACTGCGGGTC
CAAGGCAATTCCAATGCTGCTCAAAGCCTCAAGGGTAGCTCCGAATCTCC
AGGAATTGGGCATGGACGATGCATTACCGGTTGAGGTGGATATTGGCAGA
CACTGCCAGTTTCATTCCATCTTCACCTGTCCCGTTTCCAAGGAGGAGGC
TTATGAAGGAAACAATGTGCCAATGATGCTACCATGCGGCCACGTTTTGT
GCAAACAGACCATTACTCGACTGCCACGAGGAAGTCCGAGGTTCAAGTGT
CCGTACTGCCCTATGGAACAGAATGCGAAGGAGTGCCATGAGATTCACTT
TTGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:81496..82749+

>Ggra9138.t1 ID=Ggra9138.t1|Name=Ggra9138.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1254bp|location=Sequence derived from alignment at tig00000075_pilon:81496..82749+ (Gracilaria gracilis GNS1m male)
ATGGACCCCATTCTGAACGAGTACGCCGCTATGCTGCGCCGCCATCACAA
GGCCACGCGCGCCGCCGAGAGTGCCATCGACTCCATGCTGTCCACGCTGC
GCGCGCTTAGACTGGCGCTTGATCAAGATGGTGCCGCGCAAACTGTTGCC
AACACCGACGCTGTCAAGGAAGAGCCTGAGCTACAACCTGAGCAGCACGA
CCCCATGCATGTTGACCACGCGCATCATTCGCCTTCCAATTCAGAGCACG
ACTCGCTGTCGTTTGTGTTGCACCGACTGCAGATGCTTTTCTGCGCCTCA
AAGTCGCTGCAAAGCTCGTTGCTCACGGACCACAAGTCCGTTGGAGCCGC
TATCAACAAGTTTGGCAAGACAATAGACTCTGCTACCGCGTCCAATCTCG
GCGACTTGTGTGCACCTTCCGTGCGTCTCAACACGTGCAAGATTAACGAC
GCCATTGCGGCGCACCTGTTTCGCGAGGGGCTGTTCGACGTTGGACGCAA
GTTCCTGTTGGAAGCAGCCGTACTTTTGGATGACCGTCACATCCAACCTT
TTGAACAACTGTACCACATTCTCAAAGCGTTTCGTAACAATCATCTTGCT
CCGGCCATCGAATGGGCGCAGGCCAACCATCAACTGTTGCTGCAGTCCAA
CTCCCATCTCGAGTTCCGTCTGCACCGGCTGGCGTACCTGCATCTGCTTC
AACAAGATCGAAGGGCCGAGGCGTTGCAATACGCACAGCGTCATTTCTGT
AATTTTCAACATCACATTGCCAGCGTTCAGAAACTCATGACTTGTCTACT
CTACGCACCGTCACTGTCCAAGTCGCCGTACAAGGCGTTGGTGTCGCCGT
CGCATAAGGAGGACATTGAACGCTCGCTGTCACGCGAGTATTGCCGCGCC
CAGGGTCTTCCTCGCGATTCCCTGCTTGTCACAGTCATTCACTGCGGGTC
CAAGGCAATTCCAATGCTGCTCAAAGCCTCAAGGGTAGCTCCGAATCTCC
AGGAATTGGGCATGGACGATGCATTACCGGTTGAGGTGGATATTGGCAGA
CACTGCCAGTTTCATTCCATCTTCACCTGTCCCGTTTCCAAGGAGGAGGC
TTATGAAGGAAACAATGTGCCAATGATGCTACCATGCGGCCACGTTTTGT
GCAAACAGACCATTACTCGACTGCCACGAGGAAGTCCGAGGTTCAAGTGT
CCGTACTGCCCTATGGAACAGAATGCGAAGGAGTGCCATGAGATTCACTT
TTGA
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