Ggra9211.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra9211.t1
Unique Name	Ggra9211.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	165

Homology

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BLAST of Ggra9211.t1 vs. uniprot
Match: A0A2V3IP74 (Caltractin n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IP74_9FLOR)

HSP 1 Score: 216 bits (549), Expect = 2.770e-69
Identity = 96/164 (58.54%), Postives = 132/164 (80.49%), Query Frame = 0

Query:    1 MQLSNFVIPTKISSTPVFRTVVSKVFSKFDTNKDGSMDSNELTVAMCHVHYNLARHSPGLMQPPTSESILKLMKKHDKDSSSTLSEEEFFDMAVEWFDDGGVMFIEQMLLTSLMSMVVLPGSAAIIHDKIPFGKHIPKLLFKVLFGVALKVVATNISMARKASE 164
            M L N ++PTK+S+TP FR  V++VF+KFDTN + ++D+ ELTVAMCH+H++L +HSPGL +PPTS+ + K+M++HDKD SSTL E+EFFDMAV+WFD  G MF ++++LTSLMSMV++P +A ++H KIP  + +P +LFKVLFGVALKV ATNI  + K  E
Sbjct:    1 MHLGNAIMPTKLSATPAFRACVTRVFNKFDTNGNHTIDATELTVAMCHLHFSLVKHSPGLTEPPTSDDVAKIMREHDKDGSSTLDEQEFFDMAVKWFDHSGAMFCQRLILTSLMSMVIIPETANLLHKKIPLARRLPNILFKVLFGVALKVAATNIQSSSKDDE 164

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BLAST of Ggra9211.t1 vs. uniprot
Match: A0A1X6NV29 (EF-hand domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NV29_PORUM)

HSP 1 Score: 97.1 bits (240), Expect = 2.060e-22
Identity = 54/166 (32.53%), Postives = 88/166 (53.01%), Query Frame = 0

Query:    2 QLSNFVIPT---KISSTPVFRTVVSKVFSKFDTNKDGSMDSNELTVAMCHVHYNLARHSPGLMQPPTSESILKLMKKHDKDSSSTLSEEEFFDMAVEWFDDGGVMFIEQMLLTSLMSMVVLPGSAAIIHDKIPFGKHIPKLLFKVLFGVALKVVATNISMARKASE 164
            +L  F +PT   + S T  F   VS VF K   N  G +D   L VAMCH+H+ L +H PG+ + PT E++ +++   D +    L E EF   A EW+D+ G +++ +  L S ++ V +P  AA    KIP G  +PK ++    G+    V+T ++   + ++
Sbjct:    7 RLPAFRVPTPGRRFSDTSAFDKTVSAVFRKVAVN--GVIDEMALVVAMCHLHFKLKKHVPGVTRTPTREAVQEVLGGFDANRDGVLDETEFHRFAKEWWDNTGAIWVYRAALVSAVTFVAVPELAAAARLKIPHGTDVPKGVWVAAAGLLFNAVSTAVAARMERAD 170

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BLAST of Ggra9211.t1 vs. uniprot
Match: A0A7S1X9E6 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1X9E6_9RHOD)

HSP 1 Score: 67.8 bits (164), Expect = 3.650e-11
Identity = 33/130 (25.38%), Postives = 62/130 (47.69%), Query Frame = 0

Query:   11 KISSTPVFRTVVSKVFSKFDTNKDGSMDSNELTVAMCHVHYNLARHSPGLMQPPTSESILKLMKKHDKDSSSTLSEEEFFDMAVEWFDDGGVMFIEQMLLTSLMSMVVLPGSAAIIHDKIPFGKHIPKLL 140
            +++ +  F+  V   F K D N  G++D +E+T+AMCH  + L++  PG+ + PT   +     +      + ++ EEF     EW       F+  +     M+ VV+P  A ++  ++     +PK L
Sbjct:   22 EVTKSDAFKKSVGVAFVKVDRNNSGTIDKDEMTLAMCHFVFQLSKRIPGIAEVPTRSEVDDFFDEFAGPGKTEMNLEEFERFVAEWVKRNSSNFLALVSTGLAMNFVVIPACAGVLKREVDILHRVPKAL 151

The following BLAST results are available for this feature:

BLAST of Ggra9211.t1 vs. uniprot

BLAST of Ggra9211.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A2V3IP74	2.770e-69	58.54	Caltractin n=1 Tax=Gracilariopsis chorda TaxID=448...	[more]
A0A1X6NV29	2.060e-22	32.53	EF-hand domain-containing protein n=1 Tax=Porphyra...	[more]
A0A7S1X9E6	3.650e-11	25.38	Hypothetical protein n=1 Tax=Compsopogon caeruleus...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 21..49 e-value: 1.5 score: 16.4 coord: 68..96 e-value: 7.0 score: 11.0
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 24..92 e-value: 6.7E-8 score: 32.9
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 64..99 score: 8.599581
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 17..52 score: 10.635944
None	No IPR available	GENE3D	1.10.238.10		coord: 9..101 e-value: 4.3E-12 score: 48.3
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 108..127
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 128..138
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..107
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 159..164
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 139..158
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 30..42
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 23..97

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:395173..395830 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9211.t1	Ggra9211.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000075_pilon 395173..395830 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra9211.t1 ID=Ggra9211.t1|Name=Ggra9211.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=165bp
MQLSNFVIPTKISSTPVFRTVVSKVFSKFDTNKDGSMDSNELTVAMCHVH
YNLARHSPGLMQPPTSESILKLMKKHDKDSSSTLSEEEFFDMAVEWFDDG
GVMFIEQMLLTSLMSMVVLPGSAAIIHDKIPFGKHIPKLLFKVLFGVALK
VVATNISMARKASE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002048	EF_hand_dom
IPR018247	EF_Hand_1_Ca_BS
IPR011992	EF-hand-dom_pair