Ggra9144.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9144.t1
Unique NameGgra9144.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length202
Homology
BLAST of Ggra9144.t1 vs. uniprot
Match: A0A2V3IHV3 (Ras-related protein RABC1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHV3_9FLOR)

HSP 1 Score: 358 bits (920), Expect = 1.320e-124
Identity = 180/201 (89.55%), Postives = 194/201 (96.52%), Query Frame = 0
Query:    1 MEFDETFKILLVGDSGVGKSSILLRFTDDVFEPMQPTIGVDFKVKAFKVDHRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALKEVWLKEVAMYSTRPAAVKMVVGNKVDIEQRQVSREEGLEFARQQSTLFVESSAKTATGVQQTFEELLRKILETPQLCASDSSAAANIRPSADNTSSSYAESCSC 201
            MEFDETFKIL+VGDSGVGKSSILLRFTDDVFEPMQPTIGVDFKVKAFKVD+RRVKMTIWDTAGQERFRTLT+AYYRGAHGVILVYDVSKRETF++LKE+WLKEVAMYSTRP+AVKM+VGNK+DIE+RQVSREEG+EFARQQSTLFVESSAKTATGVQQTFEELLRKILETP+LC S+SS   NIRP+A N SSSYAE CSC
Sbjct:    1 MEFDETFKILVVGDSGVGKSSILLRFTDDVFEPMQPTIGVDFKVKAFKVDNRRVKMTIWDTAGQERFRTLTNAYYRGAHGVILVYDVSKRETFDSLKEIWLKEVAMYSTRPSAVKMIVGNKIDIEKRQVSREEGVEFARQQSTLFVESSAKTATGVQQTFEELLRKILETPELCVSESSQGGNIRPTAGNASSSYAEGCSC 201          
BLAST of Ggra9144.t1 vs. uniprot
Match: R7QD81 (Rab family GTPase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QD81_CHOCR)

HSP 1 Score: 349 bits (896), Expect = 5.780e-121
Identity = 184/201 (91.54%), Postives = 189/201 (94.03%), Query Frame = 0
Query:    1 MEFDETFKILLVGDSGVGKSSILLRFTDDVFEPMQPTIGVDFKVKAFKVDHRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALKEVWLKEVAMYSTRPAAVKMVVGNKVDIEQRQVSREEGLEFARQQSTLFVESSAKTATGVQQTFEELLRKILETPQLCASDSSAAANIRPSADNTSSSYAESCSC 201
            MEFDETFKILLVGDSGVGKSSILLRFTDDVFE MQPTIGVDFKVKA KVD+RRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALK+VWLKEV+MYSTR AAVKMVVGNKVDIE RQVSREEGL FARQQSTLFVESSAKTA+GVQQTFEELLRKILETPQLC SDS AA NI+PSA    SSYAESCSC
Sbjct:    1 MEFDETFKILLVGDSGVGKSSILLRFTDDVFEAMQPTIGVDFKVKAMKVDNRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALKDVWLKEVSMYSTRSAAVKMVVGNKVDIEDRQVSREEGLAFARQQSTLFVESSAKTASGVQQTFEELLRKILETPQLCTSDS-AAGNIQPSASGQGSSYAESCSC 200          
BLAST of Ggra9144.t1 vs. uniprot
Match: A0A1X6P3G8 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P3G8_PORUM)

HSP 1 Score: 259 bits (663), Expect = 2.220e-85
Identity = 127/178 (71.35%), Postives = 150/178 (84.27%), Query Frame = 0
Query:    3 FDETFKILLVGDSGVGKSSILLRFTDDVFEPMQPTIGVDFKVKAFKVDHRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALKEVWLKEVAMYSTRPAAVKMVVGNKVDIEQRQVSREEGLEFARQQSTLFVESSAKTATGVQQTFEELLRKILETPQLCASDSSA 180
            +DE FK+LL GDSGVGKSSILLRFTDDVF+ + PTIGVDFKVKA +VD RRVK+T WDTAGQERFRTLTSAYYRGAHGV+LVYDVSKRETF+ L  VWL EV  YSTRP  +KM+VGNK+D+  R+VS  +G   AR+   LF+ESSA+TA GV+Q FEEL+RK+L+TPQLCAS S++
Sbjct:    4 YDEQFKVLLCGDSGVGKSSILLRFTDDVFDDVAPTIGVDFKVKALEVDGRRVKITAWDTAGQERFRTLTSAYYRGAHGVVLVYDVSKRETFDNLASVWLPEVNQYSTRPEVIKMIVGNKLDLANREVSSADGDALARRNGCLFIESSARTAAGVRQCFEELVRKVLDTPQLCASSSAS 181          
BLAST of Ggra9144.t1 vs. uniprot
Match: D8RPN0 (Rab family GTPase n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RPN0_SELML)

HSP 1 Score: 238 bits (608), Expect = 6.640e-77
Identity = 126/202 (62.38%), Postives = 154/202 (76.24%), Query Frame = 0
Query:    2 EFDETFKILLVGDSGVGKSSILLRFTDDVFEPMQPTIGVDFKVKAFKVDHRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALKEVWLKEVAMYSTRPAAVKMVVGNKVDIE-QRQVSREEGLEFARQQSTLFVESSAKTATGVQQTFEELLRKILETPQLCASDSSAAANI-RPSADNTSSSYAESCSC 201
            EFD  FKILL+GDSGVGKSS+LLRFT D F+ + PTIGVDFK+K   ++ +R+K+TIWDTAGQERFRTLTS+YYRGA GVILVYDV++R+TF  L++VWLKEV +YST    VK++VGNKVD + +R VS+ EG+ FAR+   LF+ESSAKT   VQQ FEEL+RKILETP L A   S   NI RP  +      A SC+C
Sbjct:   14 EFDHLFKILLIGDSGVGKSSLLLRFTADTFDDLSPTIGVDFKLKLMTLEGKRLKLTIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLQDVWLKEVELYSTNQDCVKLLVGNKVDRDSERAVSQHEGIAFARKYGCLFLESSAKTRINVQQCFEELVRKILETPSLVAEAKSVKKNILRPGNEPPPPENAGSCAC 215          
BLAST of Ggra9144.t1 vs. uniprot
Match: A0A5B8N2B8 (Small rab-related GTPase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8N2B8_9CHLO)

HSP 1 Score: 237 bits (605), Expect = 1.660e-76
Identity = 119/183 (65.03%), Postives = 146/183 (79.78%), Query Frame = 0
Query:    3 FDETFKILLVGDSGVGKSSILLRFT-DDVFEPMQPTIGVDFKVKAFKVDHRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALKEVWLKEVAMYSTRPAAVKMVVGNKVDIEQRQVSREEGLEFARQQSTLFVESSAKTATGVQQTFEELLRKILETPQLCASDSSAAANI 184
            FD  FKILLVGDSGVGKSSIL+RFT +D FE M PTIGVDFK+K   +D +R+K+TIWDTAGQERFRTLTS+YYRGA G+I  YDV ++ETF +L+E+W+ EV MYST P A+KMVVGNKVD++ RQV++EEG  FARQ   LF+E+SAK    + Q FEEL+RK+LETPQL    +SA+  I
Sbjct:   14 FDHLFKILLVGDSGVGKSSILMRFTTEDCFEDMSPTIGVDFKLKMLDLDGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIFAYDVCRKETFRSLQELWMNEVDMYSTIPDAIKMVVGNKVDLQDRQVTKEEGKNFARQHGCLFIETSAKENIKIAQCFEELVRKMLETPQLVEDYNSASKGI 196          
BLAST of Ggra9144.t1 vs. uniprot
Match: A0A388JM55 (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JM55_CHABU)

HSP 1 Score: 237 bits (604), Expect = 2.000e-76
Identity = 121/202 (59.90%), Postives = 155/202 (76.73%), Query Frame = 0
Query:    1 MEFDETFKILLVGDSGVGKSSILLRFTDDVFEPMQPTIGVDFKVKAFKVDHRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALKEVWLKEVAMYSTRPAAVKMVVGNKVDIEQ-RQVSREEGLEFARQQSTLFVESSAKTATGVQQTFEELLRKILETPQLCASDSSAAANIRPSADNTSSSYAESCSC 201
            +EFD  FK+LL+GDSGVGKSS+LLRFT + F+ + PTIGVDFK+K   ++ +R+K+TIWDTAGQERFRTLTS+YYRGA G+IL YDV++R+TF  L +VWLKEV  YST P  VKM+VGNK+D E+ R V++++ + FARQ   LF+E SAK++ GVQQ FEEL+RKILETP L   D++ A  +RP AD  S   A  C C
Sbjct:    7 VEFDHLFKLLLIGDSGVGKSSLLLRFTTNTFDDLSPTIGVDFKLKMLNLNGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILTYDVTRRDTFTNLADVWLKEVERYSTNPDCVKMLVGNKIDKEEERVVTKQDAIAFARQYGCLFIECSAKSSVGVQQCFEELVRKILETPSLVL-DTAPAGTVRPGADQ-SVDVASGCRC 206          
BLAST of Ggra9144.t1 vs. uniprot
Match: A0A1Y1II07 (Rab family GTPase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1II07_KLENI)

HSP 1 Score: 235 bits (600), Expect = 1.330e-75
Identity = 120/201 (59.70%), Postives = 154/201 (76.62%), Query Frame = 0
Query:    2 EFDETFKILLVGDSGVGKSSILLRFTDDVFEPMQPTIGVDFKVKAFKVDHRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALKEVWLKEVAMYSTRPAAVKMVVGNKVDIE-QRQVSREEGLEFARQQSTLFVESSAKTATGVQQTFEELLRKILETPQLCASDSSAAANIRPSADNTSSSYAESCSC 201
            EFD  FK+LL+GDSGVGKSS+LLRFT D F+ + PTIGVDFK+K   +  +R+K+TIWDTAGQERFRTLTS+YYRGA G+IL YDV++RETF  L ++WLKEV +YST P  +KM+VGNKVD E +RQV++EEG  FARQ   LF+E+SAKT  GVQ  F+EL++KIL+TP L      +  ++R +AD  +SS    C+C
Sbjct:   23 EFDHLFKLLLIGDSGVGKSSLLLRFTADTFDDLSPTIGVDFKLKMLTLGGKRIKLTIWDTAGQERFRTLTSSYYRGAQGIILAYDVTRRETFTDLSDIWLKEVELYSTNPDCIKMLVGNKVDRESERQVTKEEGKAFARQHGCLFLEASAKTRRGVQDCFQELVQKILDTPGLVDVGRPSGDHLRLNADQQASSSG--CAC 221          
BLAST of Ggra9144.t1 vs. uniprot
Match: A0A804HYL4 (Uncharacterized protein n=4 Tax=Petrosaviidae TaxID=1437197 RepID=A0A804HYL4_MUSAM)

HSP 1 Score: 231 bits (589), Expect = 4.330e-74
Identity = 113/179 (63.13%), Postives = 142/179 (79.33%), Query Frame = 0
Query:    2 EFDETFKILLVGDSGVGKSSILLRFTDDVFEPMQPTIGVDFKVKAFKVDHRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALKEVWLKEVAMYSTRPAAVKMVVGNKVDIE-QRQVSREEGLEFARQQSTLFVESSAKTATGVQQTFEELLRKILETPQLCASDSS 179
            EFD  FK+LL+GDSGVGKSS+LLRFT D FE + PTIGVDFKVK   +  +R+K+ IWDTAGQERFRTLTS+YYRGA GVI+VYDV++R+TF  L ++W KE+ +YST    +KM+VGNKVD E +R V+++EG++FAR+   LF+E SAKT   V+Q FEEL+ KILETP LCA  SS
Sbjct:   10 EFDYLFKLLLIGDSGVGKSSLLLRFTSDSFEDLSPTIGVDFKVKIVNIGGKRLKLAIWDTAGQERFRTLTSSYYRGAQGVIMVYDVTRRDTFTNLSDIWAKEIELYSTNQDCIKMLVGNKVDKEGERAVTKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPSLCAEGSS 188          
BLAST of Ggra9144.t1 vs. uniprot
Match: A9RLA5 (Rab18/RabC-family small GTPase n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A9RLA5_PHYPA)

HSP 1 Score: 231 bits (588), Expect = 6.350e-74
Identity = 112/185 (60.54%), Postives = 146/185 (78.92%), Query Frame = 0
Query:    2 EFDETFKILLVGDSGVGKSSILLRFTDDVFEPMQPTIGVDFKVKAFKVDHRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALKEVWLKEVAMYSTRPAAVKMVVGNKVDIEQ--RQVSREEGLEFARQQSTLFVESSAKTATGVQQTFEELLRKILETPQLCASDSSAAANI 184
            EFD  FKILL+GDSGVGKSS+L+RFT D F+ + PTIGVDFKVK   +  +++K+TIWDTAGQERFRTLTS+YYRGA G+ILVYDVS+R TF  L ++WLKEV  YST P  +KM++GNKVD+E+  R V+++EG+ FARQ   LF+E+SAKT+  VQ+ F+EL++KIL+TP L A  +    N+
Sbjct:    7 EFDHLFKILLIGDSGVGKSSLLVRFTADTFDDLSPTIGVDFKVKMMTLGGKKLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVSRRATFTNLSDIWLKEVDRYSTNPDCIKMLIGNKVDLEEHERVVTKKEGIAFARQHGCLFLEASAKTSVNVQRCFDELVQKILDTPSLTADTAQLKKNV 191          
BLAST of Ggra9144.t1 vs. uniprot
Match: ras-related protein RABC1-like isoform X1 n=2 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4ACF40 (ras-related protein RABC1-like isoform X1 n=2 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4ACF40)

HSP 1 Score: 229 bits (584), Expect = 2.570e-73
Identity = 111/180 (61.67%), Postives = 142/180 (78.89%), Query Frame = 0
Query:    2 EFDETFKILLVGDSGVGKSSILLRFTDDVFEPMQPTIGVDFKVKAFKVDHRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALKEVWLKEVAMYSTRPAAVKMVVGNKVDIE-QRQVSREEGLEFARQQSTLFVESSAKTATGVQQTFEELLRKILETPQLCASDSSA 180
            EFD  FK+LL+GDSGVGKSS+LLRFT D FE + PTIGVDFKVK   +  +R+K+ +WDTAGQERFRTLTS+YYRGA G+I+VYDV++R+TF  L ++W KE+ +YST    +KM+VGNKVD E +R V+++EG+ FAR+   LF+E SAKT   V+Q FEEL+ KILETP LCA  SS+
Sbjct:   10 EFDYLFKLLLIGDSGVGKSSLLLRFTSDSFEDLSPTIGVDFKVKIVNIGGKRLKLAVWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWTKEIDLYSTNQDCIKMLVGNKVDKENERVVTKKEGINFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPSLCAEGSSS 189          
The following BLAST results are available for this feature:
BLAST of Ggra9144.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IHV31.320e-12489.55Ras-related protein RABC1 n=1 Tax=Gracilariopsis c... [more]
R7QD815.780e-12191.54Rab family GTPase n=1 Tax=Chondrus crispus TaxID=2... [more]
A0A1X6P3G82.220e-8571.35Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
D8RPN06.640e-7762.38Rab family GTPase n=1 Tax=Selaginella moellendorff... [more]
A0A5B8N2B81.660e-7665.03Small rab-related GTPase n=1 Tax=Chloropicon primu... [more]
A0A388JM552.000e-7659.90Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A1Y1II071.330e-7559.70Rab family GTPase n=1 Tax=Klebsormidium nitens Tax... [more]
A0A804HYL44.330e-7463.13Uncharacterized protein n=4 Tax=Petrosaviidae TaxI... [more]
A9RLA56.350e-7460.54Rab18/RabC-family small GTPase n=3 Tax=Physcomitri... [more]
ras-related protein RABC1-like isoform X1 n=2 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4ACF402.570e-7361.67ras-related protein RABC1-like isoform X1 n=2 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 7..28
score: 51.95
coord: 47..69
score: 47.68
coord: 29..45
score: 28.33
coord: 145..167
score: 39.43
coord: 111..124
score: 38.88
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 4..170
e-value: 1.5E-26
score: 104.2
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 7..170
e-value: 1.8E-94
score: 329.8
NoneNo IPR availableSMARTSM00177arf_sub_2coord: 3..171
e-value: 8.4E-5
score: 19.9
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 12..200
e-value: 1.4E-5
score: 30.1
NoneNo IPR availablePANTHERPTHR47977:SF19RAS-RELATED PROTEIN RABC1-LIKEcoord: 2..194
NoneNo IPR availablePANTHERPTHR47977LD21953P-RELATEDcoord: 2..194
NoneNo IPR availablePROSITEPS51419RABcoord: 2..201
score: 32.987316
NoneNo IPR availablePROSITEPS51420RHOcoord: 1..167
score: 9.030685
NoneNo IPR availablePROSITEPS51417ARFcoord: 1..167
score: 9.48139
NoneNo IPR availableCDDcd01863Rab18coord: 7..167
e-value: 8.26316E-94
score: 268.795
IPR001806Small GTPaseSMARTSM00174rho_sub_3coord: 9..170
e-value: 1.5E-12
score: 40.7
IPR001806Small GTPasePFAMPF00071Rascoord: 8..168
e-value: 4.5E-55
score: 185.7
IPR001806Small GTPasePROSITEPS51421RAScoord: 2..201
score: 15.428831
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 5..163
e-value: 1.7E-29
score: 100.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 1..198
e-value: 2.8E-64
score: 218.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..171

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:89637..90437 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9144.t1Ggra9144.t1Gracilaria gracilis GNS1m malemRNAtig00000075_pilon 89637..90437 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9144.t1 ID=Ggra9144.t1|Name=Ggra9144.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=202bp
MEFDETFKILLVGDSGVGKSSILLRFTDDVFEPMQPTIGVDFKVKAFKVD
HRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALKEVW
LKEVAMYSTRPAAVKMVVGNKVDIEQRQVSREEGLEFARQQSTLFVESSA
KTATGVQQTFEELLRKILETPQLCASDSSAAANIRPSADNTSSSYAESCS
C*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase