Ggra9144.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9144.t1
Unique NameGgra9144.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length202
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:89637..90437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ14579
PFAMsRas
Max annot lvl35493|Streptophyta
KEGG koko:K07910,ko:K17506
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005886,GO:0012505,GO:0016020,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0071944
Evalue6.65e-77
EggNOG OGsKOG0080@1|root,KOG0080@2759|Eukaryota,37KG9@33090|Viridiplantae,3GEI6@35493|Streptophyta
EC3.1.3.16
DescriptionRas-related protein
COG categoryU
BRITEko00000,ko01000,ko01009,ko04031,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9144Ggra9144Gracilaria gracilis GNS1m malegenetig00000075_pilon 89637..90437 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9144.t1Ggra9144.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 89637..90437 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9144.t1.start1Ggra9144.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 89637..89639 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9144.t1.CDS1Ggra9144.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 89637..89818 +
Ggra9144.t1.CDS2Ggra9144.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 89925..89967 +
Ggra9144.t1.CDS3Ggra9144.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000075_pilon 90057..90437 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9144.t1.exon1Ggra9144.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 89637..89818 +
Ggra9144.t1.exon2Ggra9144.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 89925..89967 +
Ggra9144.t1.exon3Ggra9144.t1.exon3Gracilaria gracilis GNS1m maleexontig00000075_pilon 90057..90437 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9144.t1.intron1Ggra9144.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 89819..89924 +
Ggra9144.t1.intron2Ggra9144.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000075_pilon 89968..90056 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9144.t1.stop1Ggra9144.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 90435..90437 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9144.t1 ID=Ggra9144.t1|Name=Ggra9144.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=202bp
MEFDETFKILLVGDSGVGKSSILLRFTDDVFEPMQPTIGVDFKVKAFKVD
HRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALKEVW
LKEVAMYSTRPAAVKMVVGNKVDIEQRQVSREEGLEFARQQSTLFVESSA
KTATGVQQTFEELLRKILETPQLCASDSSAAANIRPSADNTSSSYAESCS
C*
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spliced messenger RNA

>Ggra9144.t1 ID=Ggra9144.t1|Name=Ggra9144.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=606bp|location=Sequence derived from alignment at tig00000075_pilon:89637..90437+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTTTGATGAGACGTTTAAGATTCTTCTTGTGGGCGATAGCGGTGT
TGGAAAGTCCAGCATTCTGTTACGCTTCACGGATGATGTGTTTGAACCTA
TGCAACCTACCATTGGCGTCGATTTCAAGGTCAAGGCTTTCAAGGTGGAT
CATCGTCGCGTCAAGATGACTATTTGGGATACTGCCGGTCAAGAACGCTT
TCGAACGCTCACCAGTGCCTATTACCGAGGAGCCCACGGTGTCATCTTAG
TATACGACGTCTCAAAACGAGAGACCTTTGAAGCCCTCAAAGAAGTATGG
CTCAAAGAAGTAGCAATGTATAGTACCAGACCAGCCGCCGTCAAAATGGT
CGTCGGAAACAAGGTCGATATCGAACAACGACAAGTGTCTCGAGAAGAAG
GTCTAGAATTTGCTCGTCAACAAAGTACCCTCTTCGTCGAATCAAGCGCC
AAGACCGCCACCGGTGTACAACAAACCTTCGAAGAACTGCTACGGAAGAT
TCTAGAGACCCCTCAATTATGCGCTTCGGACAGTTCTGCAGCCGCTAATA
TCAGACCTTCGGCTGATAACACCTCTTCGTCGTATGCAGAGAGTTGCTCA
TGTTAA
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protein sequence of Ggra9144.t1

>Ggra9144.t1 ID=Ggra9144.t1|Name=Ggra9144.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=202bp
MEFDETFKILLVGDSGVGKSSILLRFTDDVFEPMQPTIGVDFKVKAFKVD
HRRVKMTIWDTAGQERFRTLTSAYYRGAHGVILVYDVSKRETFEALKEVW
LKEVAMYSTRPAAVKMVVGNKVDIEQRQVSREEGLEFARQQSTLFVESSA
KTATGVQQTFEELLRKILETPQLCASDSSAAANIRPSADNTSSSYAESCS
C*
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mRNA from alignment at tig00000075_pilon:89637..90437+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9144.t1 ID=Ggra9144.t1|Name=Ggra9144.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=801bp|location=Sequence derived from alignment at tig00000075_pilon:89637..90437+ (Gracilaria gracilis GNS1m male)
ATGGAGTTTGATGAGACGTTTAAGATTCTTCTTGTGGGCGATAGCGGTGT
TGGAAAGTCCAGCATTCTGTTACGCTTCACGGATGATGTGTTTGAACCTA
TGCAACCTACCATTGGCGTCGATTTCAAGGTCAAGGCTTTCAAGGTGGAT
CATCGTCGCGTCAAGATGACTATTTGGGATACGTACGCTTTCTCTCTCTC
ACTTTATCCTGCGTTTGTTTCGCTTGCCTTGCTTTTTGCGTGCTTCTGAC
ACCTGTTCTCTGTGCATTTGCTCGCGTCCGATCTGTAGTGCCGGTCAAGA
ACGCTTTCGAACGCTCACCAGTGCCTATTACGTAAGTAAATCACCTAGTT
CCTGCTATCTGCATCTGCCGTCAAATCGCGCTAACTCCAACCTAAAACTA
CCTTCCACACTTCCACACAGCGAGGAGCCCACGGTGTCATCTTAGTATAC
GACGTCTCAAAACGAGAGACCTTTGAAGCCCTCAAAGAAGTATGGCTCAA
AGAAGTAGCAATGTATAGTACCAGACCAGCCGCCGTCAAAATGGTCGTCG
GAAACAAGGTCGATATCGAACAACGACAAGTGTCTCGAGAAGAAGGTCTA
GAATTTGCTCGTCAACAAAGTACCCTCTTCGTCGAATCAAGCGCCAAGAC
CGCCACCGGTGTACAACAAACCTTCGAAGAACTGCTACGGAAGATTCTAG
AGACCCCTCAATTATGCGCTTCGGACAGTTCTGCAGCCGCTAATATCAGA
CCTTCGGCTGATAACACCTCTTCGTCGTATGCAGAGAGTTGCTCATGTTA
A
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Coding sequence (CDS) from alignment at tig00000075_pilon:89637..90437+

>Ggra9144.t1 ID=Ggra9144.t1|Name=Ggra9144.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=606bp|location=Sequence derived from alignment at tig00000075_pilon:89637..90437+ (Gracilaria gracilis GNS1m male)
ATGGAGTTTGATGAGACGTTTAAGATTCTTCTTGTGGGCGATAGCGGTGT
TGGAAAGTCCAGCATTCTGTTACGCTTCACGGATGATGTGTTTGAACCTA
TGCAACCTACCATTGGCGTCGATTTCAAGGTCAAGGCTTTCAAGGTGGAT
CATCGTCGCGTCAAGATGACTATTTGGGATACTGCCGGTCAAGAACGCTT
TCGAACGCTCACCAGTGCCTATTACCGAGGAGCCCACGGTGTCATCTTAG
TATACGACGTCTCAAAACGAGAGACCTTTGAAGCCCTCAAAGAAGTATGG
CTCAAAGAAGTAGCAATGTATAGTACCAGACCAGCCGCCGTCAAAATGGT
CGTCGGAAACAAGGTCGATATCGAACAACGACAAGTGTCTCGAGAAGAAG
GTCTAGAATTTGCTCGTCAACAAAGTACCCTCTTCGTCGAATCAAGCGCC
AAGACCGCCACCGGTGTACAACAAACCTTCGAAGAACTGCTACGGAAGAT
TCTAGAGACCCCTCAATTATGCGCTTCGGACAGTTCTGCAGCCGCTAATA
TCAGACCTTCGGCTGATAACACCTCTTCGTCGTATGCAGAGAGTTGCTCA
TGTTAA
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