Ggra9220.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9220.t1
Unique NameGgra9220.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length354
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:415350..416411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9258.ENSOANP00000018768
Preferred nameRNF144B
PFAMsIBR
Max annot lvl33208|Metazoa
KEGG koko:K11975
GOsGO:0000151,GO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0010941,GO:0016020,GO:0016567,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030162,GO:0030163,GO:0031090,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031624,GO:0031966,GO:0031967,GO:0031975,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032991,GO:0036211,GO:0042176,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044390,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045732,GO:0045862,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051603,GO:0060255,GO:0060548,GO:0061136,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1902494,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1990234,GO:2000058,GO:2000060
Evalue1.37e-21
EggNOG OGsKOG1815@1|root,KOG1815@2759|Eukaryota,38C2W@33154|Opisthokonta,3BFIW@33208|Metazoa,3CR96@33213|Bilateria,48426@7711|Chordata,48ZG8@7742|Vertebrata,3J3WS@40674|Mammalia
EC2.3.2.31
Descriptionring finger protein 144B
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9220Ggra9220Gracilaria gracilis GNS1m malegenetig00000075_pilon 415350..416411 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9220.t1.start1Ggra9220.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 415350..415352 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9220.t1.CDS1Ggra9220.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 415350..416411 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9220.t1.exon1Ggra9220.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 415350..416411 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9220.t1.stop1Ggra9220.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 416409..416411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9220.t1Ggra9220.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 415350..416411 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9220.t1 ID=Ggra9220.t1|Name=Ggra9220.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=354bp
MVPRRFSARLAAADDFDADNQRALPSSQSADDAEFPDFFPNVPFRSVAAL
AEHFGADLPHFVIDTALPLSSAQPRSATRSRVRRCEICFHPESLPLRPCP
QCKATACHHCLRSWLRVRIEDGDVNHLSCFLCHELIPDSEVRNIVGELEF
NRCLFFRSKIEHGSDPTAAWCPKVGCWKLLQCNARKLNVRAPSITCSDCN
THVCPRCFSEGHGDDKCPVPTAAVRERTLSRIWEKFHTKKCPICRVKIER
AGGCSLMRCANCRTKFCWKCKGLINSEDEFTRRNRRPFSHKCYCTKVDNV
FMWISVTGGIVLVLPVAMVGLVLVAPPALITYALLPKEKKRVVRAQLAEA
VTL*
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spliced messenger RNA

>Ggra9220.t1 ID=Ggra9220.t1|Name=Ggra9220.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1062bp|location=Sequence derived from alignment at tig00000075_pilon:415350..416411+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCCGCGGCGCTTCTCTGCGCGCTTGGCTGCCGCCGATGACTTTGA
TGCCGATAATCAGCGCGCGCTTCCGTCCTCGCAGAGCGCTGACGATGCCG
AGTTCCCCGACTTCTTCCCCAATGTTCCGTTTCGCTCCGTCGCCGCCTTG
GCCGAGCACTTTGGCGCCGACCTTCCGCACTTTGTCATTGACACTGCCTT
GCCGCTGTCGTCCGCACAGCCGCGCAGCGCCACTCGCTCGCGCGTCAGAC
GCTGTGAGATTTGCTTTCACCCCGAGTCGCTGCCGCTGCGCCCGTGTCCG
CAGTGCAAGGCCACCGCCTGTCACCACTGCCTGCGCTCGTGGCTGCGCGT
CAGGATTGAGGATGGCGACGTCAACCACCTGTCGTGCTTCCTGTGCCATG
AGCTCATCCCTGACAGCGAGGTCAGGAACATTGTCGGCGAGCTCGAGTTC
AACAGATGTCTTTTCTTTCGTTCCAAGATAGAGCACGGCAGTGACCCCAC
TGCTGCATGGTGCCCAAAGGTGGGATGTTGGAAGCTTTTGCAATGCAATG
CGCGCAAACTCAACGTGCGTGCGCCCAGTATTACCTGCTCGGATTGCAAC
ACACATGTGTGTCCGCGCTGCTTCAGCGAGGGGCATGGCGATGACAAATG
TCCGGTGCCCACCGCCGCTGTCAGAGAGAGGACTCTCTCGCGAATCTGGG
AGAAGTTTCACACCAAAAAGTGTCCCATCTGCCGTGTCAAGATAGAGAGG
GCTGGCGGATGCTCTCTCATGCGCTGTGCAAACTGCAGAACCAAGTTCTG
TTGGAAGTGCAAAGGTCTCATCAATAGTGAGGACGAGTTTACACGCAGGA
ATCGTCGCCCCTTTTCTCACAAGTGCTATTGCACCAAGGTAGATAACGTC
TTCATGTGGATATCTGTCACTGGAGGAATTGTTCTTGTCTTACCTGTGGC
GATGGTTGGCCTTGTTTTGGTCGCGCCACCCGCGCTCATCACATACGCGC
TTCTGCCAAAGGAGAAGAAGCGCGTTGTACGTGCCCAACTGGCCGAGGCG
GTAACCTTATGA
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protein sequence of Ggra9220.t1

>Ggra9220.t1 ID=Ggra9220.t1|Name=Ggra9220.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=354bp
MVPRRFSARLAAADDFDADNQRALPSSQSADDAEFPDFFPNVPFRSVAAL
AEHFGADLPHFVIDTALPLSSAQPRSATRSRVRRCEICFHPESLPLRPCP
QCKATACHHCLRSWLRVRIEDGDVNHLSCFLCHELIPDSEVRNIVGELEF
NRCLFFRSKIEHGSDPTAAWCPKVGCWKLLQCNARKLNVRAPSITCSDCN
THVCPRCFSEGHGDDKCPVPTAAVRERTLSRIWEKFHTKKCPICRVKIER
AGGCSLMRCANCRTKFCWKCKGLINSEDEFTRRNRRPFSHKCYCTKVDNV
FMWISVTGGIVLVLPVAMVGLVLVAPPALITYALLPKEKKRVVRAQLAEA
VTL*
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mRNA from alignment at tig00000075_pilon:415350..416411+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9220.t1 ID=Ggra9220.t1|Name=Ggra9220.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1062bp|location=Sequence derived from alignment at tig00000075_pilon:415350..416411+ (Gracilaria gracilis GNS1m male)
ATGGTGCCGCGGCGCTTCTCTGCGCGCTTGGCTGCCGCCGATGACTTTGA
TGCCGATAATCAGCGCGCGCTTCCGTCCTCGCAGAGCGCTGACGATGCCG
AGTTCCCCGACTTCTTCCCCAATGTTCCGTTTCGCTCCGTCGCCGCCTTG
GCCGAGCACTTTGGCGCCGACCTTCCGCACTTTGTCATTGACACTGCCTT
GCCGCTGTCGTCCGCACAGCCGCGCAGCGCCACTCGCTCGCGCGTCAGAC
GCTGTGAGATTTGCTTTCACCCCGAGTCGCTGCCGCTGCGCCCGTGTCCG
CAGTGCAAGGCCACCGCCTGTCACCACTGCCTGCGCTCGTGGCTGCGCGT
CAGGATTGAGGATGGCGACGTCAACCACCTGTCGTGCTTCCTGTGCCATG
AGCTCATCCCTGACAGCGAGGTCAGGAACATTGTCGGCGAGCTCGAGTTC
AACAGATGTCTTTTCTTTCGTTCCAAGATAGAGCACGGCAGTGACCCCAC
TGCTGCATGGTGCCCAAAGGTGGGATGTTGGAAGCTTTTGCAATGCAATG
CGCGCAAACTCAACGTGCGTGCGCCCAGTATTACCTGCTCGGATTGCAAC
ACACATGTGTGTCCGCGCTGCTTCAGCGAGGGGCATGGCGATGACAAATG
TCCGGTGCCCACCGCCGCTGTCAGAGAGAGGACTCTCTCGCGAATCTGGG
AGAAGTTTCACACCAAAAAGTGTCCCATCTGCCGTGTCAAGATAGAGAGG
GCTGGCGGATGCTCTCTCATGCGCTGTGCAAACTGCAGAACCAAGTTCTG
TTGGAAGTGCAAAGGTCTCATCAATAGTGAGGACGAGTTTACACGCAGGA
ATCGTCGCCCCTTTTCTCACAAGTGCTATTGCACCAAGGTAGATAACGTC
TTCATGTGGATATCTGTCACTGGAGGAATTGTTCTTGTCTTACCTGTGGC
GATGGTTGGCCTTGTTTTGGTCGCGCCACCCGCGCTCATCACATACGCGC
TTCTGCCAAAGGAGAAGAAGCGCGTTGTACGTGCCCAACTGGCCGAGGCG
GTAACCTTATGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:415350..416411+

>Ggra9220.t1 ID=Ggra9220.t1|Name=Ggra9220.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1062bp|location=Sequence derived from alignment at tig00000075_pilon:415350..416411+ (Gracilaria gracilis GNS1m male)
ATGGTGCCGCGGCGCTTCTCTGCGCGCTTGGCTGCCGCCGATGACTTTGA
TGCCGATAATCAGCGCGCGCTTCCGTCCTCGCAGAGCGCTGACGATGCCG
AGTTCCCCGACTTCTTCCCCAATGTTCCGTTTCGCTCCGTCGCCGCCTTG
GCCGAGCACTTTGGCGCCGACCTTCCGCACTTTGTCATTGACACTGCCTT
GCCGCTGTCGTCCGCACAGCCGCGCAGCGCCACTCGCTCGCGCGTCAGAC
GCTGTGAGATTTGCTTTCACCCCGAGTCGCTGCCGCTGCGCCCGTGTCCG
CAGTGCAAGGCCACCGCCTGTCACCACTGCCTGCGCTCGTGGCTGCGCGT
CAGGATTGAGGATGGCGACGTCAACCACCTGTCGTGCTTCCTGTGCCATG
AGCTCATCCCTGACAGCGAGGTCAGGAACATTGTCGGCGAGCTCGAGTTC
AACAGATGTCTTTTCTTTCGTTCCAAGATAGAGCACGGCAGTGACCCCAC
TGCTGCATGGTGCCCAAAGGTGGGATGTTGGAAGCTTTTGCAATGCAATG
CGCGCAAACTCAACGTGCGTGCGCCCAGTATTACCTGCTCGGATTGCAAC
ACACATGTGTGTCCGCGCTGCTTCAGCGAGGGGCATGGCGATGACAAATG
TCCGGTGCCCACCGCCGCTGTCAGAGAGAGGACTCTCTCGCGAATCTGGG
AGAAGTTTCACACCAAAAAGTGTCCCATCTGCCGTGTCAAGATAGAGAGG
GCTGGCGGATGCTCTCTCATGCGCTGTGCAAACTGCAGAACCAAGTTCTG
TTGGAAGTGCAAAGGTCTCATCAATAGTGAGGACGAGTTTACACGCAGGA
ATCGTCGCCCCTTTTCTCACAAGTGCTATTGCACCAAGGTAGATAACGTC
TTCATGTGGATATCTGTCACTGGAGGAATTGTTCTTGTCTTACCTGTGGC
GATGGTTGGCCTTGTTTTGGTCGCGCCACCCGCGCTCATCACATACGCGC
TTCTGCCAAAGGAGAAGAAGCGCGTTGTACGTGCCCAACTGGCCGAGGCG
GTAACCTTATGA
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