Ggra9253.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra9253.t1
Unique Name	Ggra9253.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	154

Homology

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BLAST of Ggra9253.t1 vs. uniprot
Match: R7QA63 (Histone H2A n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QA63_CHOCR)

HSP 1 Score: 221 bits (563), Expect = 8.080e-72
Identity = 112/118 (94.92%), Postives = 115/118 (97.46%), Query Frame = 0

Query:   36 PKKVISRSSRAGLQFPVGRIHRHLKNRVSRQERVGATAAVYSAAILEYLTAEVLELAGNACKDLKVKRVTPRHLQLAIRGDEELDCLVQATIAGGGVIPYIHKSLTFKKGSKKSSQME 153
            PKK+ISRSSRAGLQFPVGRIHRHLKNRVSRQERVGATAAVYSAAILEYLTAEVLELAGNACKDLKVKRVTPRHLQLAIRGDEELDCLVQATIAGGGVIPYIHKSLT+KK   KSSQ+E
Sbjct:   32 PKKIISRSSRAGLQFPVGRIHRHLKNRVSRQERVGATAAVYSAAILEYLTAEVLELAGNACKDLKVKRVTPRHLQLAIRGDEELDCLVQATIAGGGVIPYIHKSLTYKKPGAKSSQLE 149

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BLAST of Ggra9253.t1 vs. uniprot
Match: H2AV (Histone H2A.V (Fragment) n=21 Tax=Eukaryota TaxID=2759 RepID=H2AV_STRPU)

HSP 1 Score: 186 bits (472), Expect = 2.660e-58
Identity = 94/113 (83.19%), Postives = 104/113 (92.04%), Query Frame = 0

Query:   38 KVISRSSRAGLQFPVGRIHRHLKNRVSRQERVGATAAVYSAAILEYLTAEVLELAGNACKDLKVKRVTPRHLQLAIRGDEELDCLVQATIAGGGVIPYIHKSLTFKKGSKKSS 150
            K +SRS+RAGLQFPVGRIHRHLKNR +   RVGATAAVYSAAILEYLTAEVLELAGNA KDLKVKR+TPRHLQLAIRGDEELD L++ATIAGGGVIP+IHKSL  KKGS+K++
Sbjct:   13 KAVSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGSQKAT 125

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BLAST of Ggra9253.t1 vs. uniprot
Match: C4WSK5 (Histone H2A n=42 Tax=Protostomia TaxID=33317 RepID=C4WSK5_ACYPI)

HSP 1 Score: 186 bits (472), Expect = 2.930e-58
Identity = 97/124 (78.23%), Postives = 105/124 (84.68%), Query Frame = 0

Query:   25 GTHAKTSSSTEPKKVISRSSRAGLQFPVGRIHRHLKNRVSRQERVGATAAVYSAAILEYLTAEVLELAGNACKDLKVKRVTPRHLQLAIRGDEELDCLVQATIAGGGVIPYIHKSLTFKKGSKK 148
            G  A   S     K +SRS+RAGLQFPVGRIHRHLKNR +   RVGATAAVYSAAILEYLTAEVLELAGNA KDLKVKR+TPRHLQLAIRGDEELD L++ATIAGGGVIP+IHKSL  KKGS+K
Sbjct:    3 GGKAGKDSGKSKAKAVSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIRATIAGGGVIPHIHKSLIGKKGSQK 126

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BLAST of Ggra9253.t1 vs. uniprot
Match: A0A6P7URS7 (Histone H2A n=4 Tax=Arthropoda TaxID=6656 RepID=A0A6P7URS7_IXOSC)

HSP 1 Score: 186 bits (472), Expect = 3.670e-58
Identity = 97/125 (77.60%), Postives = 106/125 (84.80%), Query Frame = 0

Query:   25 GTHAKTSSSTEPKKVISRSSRAGLQFPVGRIHRHLKNRVSRQERVGATAAVYSAAILEYLTAEVLELAGNACKDLKVKRVTPRHLQLAIRGDEELDCLVQATIAGGGVIPYIHKSLTFKKGSKKS 149
            G  A   S     K +SRS+RAGLQFPVGRIHRHLKNR +   RVGATAAVYSAAILEYLTAEVLELAGNA KDLKVKR+TPRHLQLAIRGDEELD L++ATIAGGGVIP+IHKSL  KKGS+K+
Sbjct:   10 GGKAGKDSGKAKAKAVSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGSQKT 134

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BLAST of Ggra9253.t1 vs. uniprot
Match: H6T4K6 (Histone H2A n=4 Tax=Eukaryota TaxID=2759 RepID=H6T4K6_MYTGA)

HSP 1 Score: 186 bits (471), Expect = 4.030e-58
Identity = 97/125 (77.60%), Postives = 105/125 (84.00%), Query Frame = 0

Query:   25 GTHAKTSSSTEPKKVISRSSRAGLQFPVGRIHRHLKNRVSRQERVGATAAVYSAAILEYLTAEVLELAGNACKDLKVKRVTPRHLQLAIRGDEELDCLVQATIAGGGVIPYIHKSLTFKKGSKKS 149
            G  A   S     K +SRS RAGLQFPVGRIHRHLKNR +   RVGATAAVYSAAILEYLTAEVLELAGNA KDLKVKR+TPRHLQLAIRGDEELD L++ATIAGGGVIP+IHKSL  KKGS+K+
Sbjct:    3 GGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGSQKT 127

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BLAST of Ggra9253.t1 vs. uniprot
Match: A0A3G4ZJ30 (Histone H2A n=3 Tax=Protostomia TaxID=33317 RepID=A0A3G4ZJ30_PHAPT)

HSP 1 Score: 185 bits (470), Expect = 5.730e-58
Identity = 96/125 (76.80%), Postives = 106/125 (84.80%), Query Frame = 0

Query:   25 GTHAKTSSSTEPKKVISRSSRAGLQFPVGRIHRHLKNRVSRQERVGATAAVYSAAILEYLTAEVLELAGNACKDLKVKRVTPRHLQLAIRGDEELDCLVQATIAGGGVIPYIHKSLTFKKGSKKS 149
            G  A   S     K +SRS+RAGLQFPVGRIHRHLKNR +   RVGATAAVYSAAILEYLTAEVLELAGNA KDLKVKR+TPRHLQLAIRGDEELD L++ATIAGGGVIP+IHKSL  KKG++K+
Sbjct:    3 GGKAGKDSGKAKAKAVSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLITKKGAQKA 127

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BLAST of Ggra9253.t1 vs. uniprot
Match: A0A6A4JLV4 (Histone H2A n=2 Tax=Cimicomorpha TaxID=33354 RepID=A0A6A4JLV4_APOLU)

HSP 1 Score: 186 bits (471), Expect = 6.530e-58
Identity = 97/124 (78.23%), Postives = 105/124 (84.68%), Query Frame = 0

Query:   25 GTHAKTSSSTEPKKVISRSSRAGLQFPVGRIHRHLKNRVSRQERVGATAAVYSAAILEYLTAEVLELAGNACKDLKVKRVTPRHLQLAIRGDEELDCLVQATIAGGGVIPYIHKSLTFKKGSKK 148
            G  A   S     K +SRS+RAGLQFPVGRIHRHLKNR +   RVGATAAVYSAAILEYLTAEVLELAGNA KDLKVKR+TPRHLQLAIRGDEELD L++ATIAGGGVIP+IHKSL  KKGS+K
Sbjct:   17 GGKAGKDSGKAKAKAVSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGSQK 140

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BLAST of Ggra9253.t1 vs. uniprot
Match: A0A663EBZ2 (Histone H2A n=6 Tax=Aves TaxID=8782 RepID=A0A663EBZ2_AQUCH)

HSP 1 Score: 186 bits (472), Expect = 1.510e-57
Identity = 100/150 (66.67%), Postives = 115/150 (76.67%), Query Frame = 0

Query:    1 MAPKKSAPADDKDKDTXXXXXXTNGTHAKTSSSTEPKKVISRSSRAGLQFPVGRIHRHLKNRVSRQERVGATAAVYSAAILEYLTAEVLELAGNACKDLKVKRVTPRHLQLAIRGDEELDCLVQATIAGGGVIPYIHKSLTFKKGSKKSS 150
            +A  ++APA  +D+ +        G  A   S     K +SRS RAGLQFPVGRIHRHLK R +   RVGATAAVYSAAILEYLTAEVLELAGNA KDLKVKR+TPRHLQLAIRGDEELD L++ATIAGGGVIP+IHKSL  KKG +K++
Sbjct:   30 LAAPETAPARTQDRSSGGGGGTMAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTA 179

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BLAST of Ggra9253.t1 vs. uniprot
Match: B7SP61 (Histone H2A n=2 Tax=Bilateria TaxID=33213 RepID=B7SP61_DERVA)

HSP 1 Score: 184 bits (467), Expect = 1.690e-57
Identity = 96/125 (76.80%), Postives = 105/125 (84.00%), Query Frame = 0

Query:   25 GTHAKTSSSTEPKKVISRSSRAGLQFPVGRIHRHLKNRVSRQERVGATAAVYSAAILEYLTAEVLELAGNACKDLKVKRVTPRHLQLAIRGDEELDCLVQATIAGGGVIPYIHKSLTFKKGSKKS 149
            G  A   S     K +SRS+RAGLQFPVGRIHRHLKNR +   RVGATAAVYSAAILEYLTAEVLELAGNA KDLKVKR+TPRHLQLAIRGDEELD L++AT AGGGVIP+IHKSL  KKGS+K+
Sbjct:    3 GGKAGKDSGKAKAKAVSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATTAGGGVIPHIHKSLIGKKGSQKT 127

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BLAST of Ggra9253.t1 vs. uniprot
Match: A0A4W5PSY2 (Histone H2A n=2 Tax=Clupeocephala TaxID=186625 RepID=A0A4W5PSY2_9TELE)

HSP 1 Score: 184 bits (466), Expect = 2.110e-57
Identity = 94/121 (77.69%), Postives = 104/121 (85.95%), Query Frame = 0

Query:   30 TSSSTEPKKVISRSSRAGLQFPVGRIHRHLKNRVSRQERVGATAAVYSAAILEYLTAEVLELAGNACKDLKVKRVTPRHLQLAIRGDEELDCLVQATIAGGGVIPYIHKSLTFKKGSKKSS 150
            T+S     K +SRS RAGLQFPVGRIHRHLK R +   RVGATAAVYSAAILEYLTAEVLELAGNA KDLKVKR+TPRHLQLAIRGDEELD L++ATIAGGGVIP+IHKSL  KKG +K++
Sbjct:    4 TTSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTA 124

The following BLAST results are available for this feature:

BLAST of Ggra9253.t1 vs. uniprot

BLAST of Ggra9253.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
R7QA63	8.080e-72	94.92	Histone H2A n=1 Tax=Chondrus crispus TaxID=2769 Re...	[more]
H2AV	2.660e-58	83.19	Histone H2A.V (Fragment) n=21 Tax=Eukaryota TaxID=...	[more]
C4WSK5	2.930e-58	78.23	Histone H2A n=42 Tax=Protostomia TaxID=33317 RepID...	[more]
A0A6P7URS7	3.670e-58	77.60	Histone H2A n=4 Tax=Arthropoda TaxID=6656 RepID=A0...	[more]
H6T4K6	4.030e-58	77.60	Histone H2A n=4 Tax=Eukaryota TaxID=2759 RepID=H6T...	[more]
A0A3G4ZJ30	5.730e-58	76.80	Histone H2A n=3 Tax=Protostomia TaxID=33317 RepID=...	[more]
A0A6A4JLV4	6.530e-58	78.23	Histone H2A n=2 Tax=Cimicomorpha TaxID=33354 RepID...	[more]
A0A663EBZ2	1.510e-57	66.67	Histone H2A n=6 Tax=Aves TaxID=8782 RepID=A0A663EB...	[more]
B7SP61	1.690e-57	76.80	Histone H2A n=2 Tax=Bilateria TaxID=33213 RepID=B7...	[more]
A0A4W5PSY2	2.110e-57	77.69	Histone H2A n=2 Tax=Clupeocephala TaxID=186625 Rep...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 83..96 score: 84.01 coord: 38..60 score: 72.09 coord: 68..83 score: 71.79 coord: 97..111 score: 60.57 coord: 124..142 score: 50.43
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 27..147 e-value: 1.1E-64 score: 230.9
IPR002119	Histone H2A	PANTHER	PTHR23430	HISTONE H2A	coord: 29..144
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 37..144 e-value: 4.08757E-55 score: 167.127
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 117..149 e-value: 6.2E-11 score: 41.9
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 10..116 e-value: 1.5E-20 score: 73.9
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 24..153 e-value: 1.1E-53 score: 182.5
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 17..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	PANTHER	PTHR23430:SF300	HISTONE H2A	coord: 29..144
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 46..52

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:602246..602707 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9253.t1	Ggra9253.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000075_pilon 602246..602707 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra9253.t1 ID=Ggra9253.t1|Name=Ggra9253.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=154bp
MAPKKSAPADDKDKDTKDTKSTTNGTHAKTSSSTEPKKVISRSSRAGLQF
PVGRIHRHLKNRVSRQERVGATAAVYSAAILEYLTAEVLELAGNACKDLK
VKRVTPRHLQLAIRGDEELDCLVQATIAGGGVIPYIHKSLTFKKGSKKSS
QME*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002119	Histone_H2A
IPR032454	Histone_H2A_C
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold
IPR032458	Histone_H2A_CS