Ggra9164.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9164.t1
Unique NameGgra9164.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length493
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:274984..276462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMJ185CT
Preferred namenuoF
PFAMsComplex1_51K,NADH_4Fe-4S,SLBB
Max annot lvl2759|Eukaryota
KEGG rclassRC00061
KEGG koko:K03942
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0016020,GO:0019866,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0070469,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1902494,GO:1990204
Evalue1.88e-268
EggNOG OGsCOG1894@1|root,KOG2658@2759|Eukaryota
EC1.6.5.3,1.6.99.3
DescriptionFMN binding
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9164Ggra9164Gracilaria gracilis GNS1m malegenetig00000075_pilon 274984..276462 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9164.t1.stop1Ggra9164.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 274984..274986 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9164.t1.CDS1Ggra9164.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 274984..276462 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9164.t1.exon1Ggra9164.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 274984..276462 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9164.t1.start1Ggra9164.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 276460..276462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9164.t1Ggra9164.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 274984..276462 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9164.t1 ID=Ggra9164.t1|Name=Ggra9164.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=493bp
MALRSAFSIAMQRSRNVGSSYVRALSTLKSTTPKQAAAAAPEPTSKSEET
WRVSNYTGSHGGLSDKDRIFTNLYRDGDWRLDGALKRGDWHRTKDLVHMG
RDWIINEIKASGLRGRGGAGFPSGLKYSFMPKENPDGRPNYLVVNADESE
PGTCKDREIMRSDPHKLVEGCLLVGRAMSARAAYIYIRGEFIDERKNLEE
AVAEAYSKGLLGKNASGSGFDFDVYVTHGAGAYICGEETAMIESLEGKQG
KPRLKPPFPANIGLYGCPTTVTNVETVAVVPTILRRGADWFASFGRKGNA
GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAIIPGG
SSVQLMPKDICEDVFMDFDSLKAVGSGLGTAAVIVMDKSTDVIAAISRLS
YFYKHESCGQCTPCREGTGWLWMLMERMKEGDAKVEEIDMLWEITKQIEG
HTICALGDAAAWPVQGVIRHFRPEFERRIAEFQAKNLQATAQ*
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spliced messenger RNA

>Ggra9164.t1 ID=Ggra9164.t1|Name=Ggra9164.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1479bp|location=Sequence derived from alignment at tig00000075_pilon:274984..276462- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTGAGATCTGCGTTCTCGATTGCGATGCAGCGAAGCCGCAACGT
CGGCTCTTCTTACGTGCGAGCTTTGTCCACCCTCAAATCCACCACGCCGA
AACAAGCTGCAGCTGCTGCCCCGGAACCTACGTCGAAAAGCGAAGAGACG
TGGAGAGTTTCCAACTACACTGGGTCACATGGGGGCCTGTCTGATAAAGA
TCGCATATTCACCAACCTCTACCGCGATGGAGATTGGCGTCTAGACGGAG
CATTGAAGCGCGGCGATTGGCACAGAACGAAAGACCTTGTACATATGGGA
CGCGATTGGATTATCAATGAGATCAAAGCATCTGGACTTCGTGGACGTGG
CGGAGCTGGATTTCCTTCAGGGCTGAAATATTCATTCATGCCTAAAGAAA
ACCCTGACGGTAGGCCTAATTACCTCGTCGTCAACGCAGATGAGTCTGAA
CCGGGAACTTGCAAGGATCGTGAAATCATGCGATCGGATCCTCACAAGCT
TGTCGAAGGCTGTCTCCTTGTTGGGCGTGCTATGAGCGCCCGAGCCGCAT
ACATATATATCCGGGGAGAATTTATTGACGAACGAAAGAATCTCGAAGAA
GCAGTTGCAGAAGCTTATTCGAAAGGCCTGCTTGGCAAAAATGCGAGCGG
ATCCGGCTTCGATTTTGACGTTTACGTTACTCATGGCGCTGGAGCATATA
TTTGCGGTGAAGAAACTGCTATGATTGAAAGCTTGGAGGGAAAGCAAGGA
AAACCGCGTCTGAAGCCGCCATTCCCCGCTAACATCGGTCTTTATGGATG
CCCGACTACTGTAACGAATGTCGAAACAGTCGCAGTTGTTCCTACAATTC
TCCGCCGTGGCGCTGATTGGTTTGCATCATTTGGGCGTAAAGGAAACGCA
GGCACCAAACTATTCTGCATCTCAGGTCATGTCAATAATCCGTGTACCGT
GGAGGAAGAAATGTCGATCCCGCTGCGGGAATTGATCGATCGACATTGTG
GCGGTGTCCGTGGTGGTTGGGACAACCTGCTCGCAATAATCCCAGGAGGT
TCTTCTGTTCAATTAATGCCAAAGGATATATGTGAGGACGTGTTCATGGA
CTTTGATTCTTTGAAAGCTGTTGGATCTGGACTTGGCACTGCGGCAGTTA
TTGTTATGGATAAGAGCACAGATGTCATTGCTGCGATTTCACGCCTCTCG
TATTTCTACAAGCACGAGTCGTGCGGGCAATGCACCCCGTGTCGTGAGGG
TACTGGTTGGCTTTGGATGCTTATGGAACGAATGAAGGAAGGAGATGCAA
AAGTGGAAGAAATCGATATGCTGTGGGAAATCACAAAGCAAATTGAAGGA
CATACTATTTGTGCCCTTGGTGATGCCGCCGCTTGGCCTGTTCAAGGGGT
GATCCGTCACTTCCGCCCAGAATTTGAACGACGCATTGCGGAGTTTCAAG
CCAAGAACCTGCAGGCGACAGCTCAATGA
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protein sequence of Ggra9164.t1

>Ggra9164.t1 ID=Ggra9164.t1|Name=Ggra9164.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=493bp
MALRSAFSIAMQRSRNVGSSYVRALSTLKSTTPKQAAAAAPEPTSKSEET
WRVSNYTGSHGGLSDKDRIFTNLYRDGDWRLDGALKRGDWHRTKDLVHMG
RDWIINEIKASGLRGRGGAGFPSGLKYSFMPKENPDGRPNYLVVNADESE
PGTCKDREIMRSDPHKLVEGCLLVGRAMSARAAYIYIRGEFIDERKNLEE
AVAEAYSKGLLGKNASGSGFDFDVYVTHGAGAYICGEETAMIESLEGKQG
KPRLKPPFPANIGLYGCPTTVTNVETVAVVPTILRRGADWFASFGRKGNA
GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAIIPGG
SSVQLMPKDICEDVFMDFDSLKAVGSGLGTAAVIVMDKSTDVIAAISRLS
YFYKHESCGQCTPCREGTGWLWMLMERMKEGDAKVEEIDMLWEITKQIEG
HTICALGDAAAWPVQGVIRHFRPEFERRIAEFQAKNLQATAQ*
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mRNA from alignment at tig00000075_pilon:274984..276462-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9164.t1 ID=Ggra9164.t1|Name=Ggra9164.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1479bp|location=Sequence derived from alignment at tig00000075_pilon:274984..276462- (Gracilaria gracilis GNS1m male)
ATGGCGCTGAGATCTGCGTTCTCGATTGCGATGCAGCGAAGCCGCAACGT
CGGCTCTTCTTACGTGCGAGCTTTGTCCACCCTCAAATCCACCACGCCGA
AACAAGCTGCAGCTGCTGCCCCGGAACCTACGTCGAAAAGCGAAGAGACG
TGGAGAGTTTCCAACTACACTGGGTCACATGGGGGCCTGTCTGATAAAGA
TCGCATATTCACCAACCTCTACCGCGATGGAGATTGGCGTCTAGACGGAG
CATTGAAGCGCGGCGATTGGCACAGAACGAAAGACCTTGTACATATGGGA
CGCGATTGGATTATCAATGAGATCAAAGCATCTGGACTTCGTGGACGTGG
CGGAGCTGGATTTCCTTCAGGGCTGAAATATTCATTCATGCCTAAAGAAA
ACCCTGACGGTAGGCCTAATTACCTCGTCGTCAACGCAGATGAGTCTGAA
CCGGGAACTTGCAAGGATCGTGAAATCATGCGATCGGATCCTCACAAGCT
TGTCGAAGGCTGTCTCCTTGTTGGGCGTGCTATGAGCGCCCGAGCCGCAT
ACATATATATCCGGGGAGAATTTATTGACGAACGAAAGAATCTCGAAGAA
GCAGTTGCAGAAGCTTATTCGAAAGGCCTGCTTGGCAAAAATGCGAGCGG
ATCCGGCTTCGATTTTGACGTTTACGTTACTCATGGCGCTGGAGCATATA
TTTGCGGTGAAGAAACTGCTATGATTGAAAGCTTGGAGGGAAAGCAAGGA
AAACCGCGTCTGAAGCCGCCATTCCCCGCTAACATCGGTCTTTATGGATG
CCCGACTACTGTAACGAATGTCGAAACAGTCGCAGTTGTTCCTACAATTC
TCCGCCGTGGCGCTGATTGGTTTGCATCATTTGGGCGTAAAGGAAACGCA
GGCACCAAACTATTCTGCATCTCAGGTCATGTCAATAATCCGTGTACCGT
GGAGGAAGAAATGTCGATCCCGCTGCGGGAATTGATCGATCGACATTGTG
GCGGTGTCCGTGGTGGTTGGGACAACCTGCTCGCAATAATCCCAGGAGGT
TCTTCTGTTCAATTAATGCCAAAGGATATATGTGAGGACGTGTTCATGGA
CTTTGATTCTTTGAAAGCTGTTGGATCTGGACTTGGCACTGCGGCAGTTA
TTGTTATGGATAAGAGCACAGATGTCATTGCTGCGATTTCACGCCTCTCG
TATTTCTACAAGCACGAGTCGTGCGGGCAATGCACCCCGTGTCGTGAGGG
TACTGGTTGGCTTTGGATGCTTATGGAACGAATGAAGGAAGGAGATGCAA
AAGTGGAAGAAATCGATATGCTGTGGGAAATCACAAAGCAAATTGAAGGA
CATACTATTTGTGCCCTTGGTGATGCCGCCGCTTGGCCTGTTCAAGGGGT
GATCCGTCACTTCCGCCCAGAATTTGAACGACGCATTGCGGAGTTTCAAG
CCAAGAACCTGCAGGCGACAGCTCAATGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:274984..276462-

>Ggra9164.t1 ID=Ggra9164.t1|Name=Ggra9164.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1479bp|location=Sequence derived from alignment at tig00000075_pilon:274984..276462- (Gracilaria gracilis GNS1m male)
ATGGCGCTGAGATCTGCGTTCTCGATTGCGATGCAGCGAAGCCGCAACGT
CGGCTCTTCTTACGTGCGAGCTTTGTCCACCCTCAAATCCACCACGCCGA
AACAAGCTGCAGCTGCTGCCCCGGAACCTACGTCGAAAAGCGAAGAGACG
TGGAGAGTTTCCAACTACACTGGGTCACATGGGGGCCTGTCTGATAAAGA
TCGCATATTCACCAACCTCTACCGCGATGGAGATTGGCGTCTAGACGGAG
CATTGAAGCGCGGCGATTGGCACAGAACGAAAGACCTTGTACATATGGGA
CGCGATTGGATTATCAATGAGATCAAAGCATCTGGACTTCGTGGACGTGG
CGGAGCTGGATTTCCTTCAGGGCTGAAATATTCATTCATGCCTAAAGAAA
ACCCTGACGGTAGGCCTAATTACCTCGTCGTCAACGCAGATGAGTCTGAA
CCGGGAACTTGCAAGGATCGTGAAATCATGCGATCGGATCCTCACAAGCT
TGTCGAAGGCTGTCTCCTTGTTGGGCGTGCTATGAGCGCCCGAGCCGCAT
ACATATATATCCGGGGAGAATTTATTGACGAACGAAAGAATCTCGAAGAA
GCAGTTGCAGAAGCTTATTCGAAAGGCCTGCTTGGCAAAAATGCGAGCGG
ATCCGGCTTCGATTTTGACGTTTACGTTACTCATGGCGCTGGAGCATATA
TTTGCGGTGAAGAAACTGCTATGATTGAAAGCTTGGAGGGAAAGCAAGGA
AAACCGCGTCTGAAGCCGCCATTCCCCGCTAACATCGGTCTTTATGGATG
CCCGACTACTGTAACGAATGTCGAAACAGTCGCAGTTGTTCCTACAATTC
TCCGCCGTGGCGCTGATTGGTTTGCATCATTTGGGCGTAAAGGAAACGCA
GGCACCAAACTATTCTGCATCTCAGGTCATGTCAATAATCCGTGTACCGT
GGAGGAAGAAATGTCGATCCCGCTGCGGGAATTGATCGATCGACATTGTG
GCGGTGTCCGTGGTGGTTGGGACAACCTGCTCGCAATAATCCCAGGAGGT
TCTTCTGTTCAATTAATGCCAAAGGATATATGTGAGGACGTGTTCATGGA
CTTTGATTCTTTGAAAGCTGTTGGATCTGGACTTGGCACTGCGGCAGTTA
TTGTTATGGATAAGAGCACAGATGTCATTGCTGCGATTTCACGCCTCTCG
TATTTCTACAAGCACGAGTCGTGCGGGCAATGCACCCCGTGTCGTGAGGG
TACTGGTTGGCTTTGGATGCTTATGGAACGAATGAAGGAAGGAGATGCAA
AAGTGGAAGAAATCGATATGCTGTGGGAAATCACAAAGCAAATTGAAGGA
CATACTATTTGTGCCCTTGGTGATGCCGCCGCTTGGCCTGTTCAAGGGGT
GATCCGTCACTTCCGCCCAGAATTTGAACGACGCATTGCGGAGTTTCAAG
CCAAGAACCTGCAGGCGACAGCTCAATGA
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