Ggra9249.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9249.t1
Unique NameGgra9249.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length331
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:578809..581462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4098.XP_009601440.1
PFAMsSec34
Max annot lvl35493|Streptophyta
KEGG koko:K20290
GOsGO:0000139,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0006464,GO:0006486,GO:0006807,GO:0006810,GO:0006888,GO:0006890,GO:0006891,GO:0006996,GO:0007030,GO:0008104,GO:0008150,GO:0008152,GO:0008565,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0017119,GO:0019538,GO:0031090,GO:0031647,GO:0031984,GO:0032588,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034645,GO:0036211,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0050821,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065007,GO:0065008,GO:0070085,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0098588,GO:0098791,GO:0099023,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue9.57e-29
EggNOG OGsKOG2604@1|root,KOG2604@2759|Eukaryota,37PAQ@33090|Viridiplantae,3G97S@35493|Streptophyta,44IG5@71274|asterids
DescriptionConserved oligomeric Golgi complex subunit
COG categoryU
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9249Ggra9249Gracilaria gracilis GNS1m malegenetig00000075_pilon 578809..581462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9249.t1Ggra9249.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 578809..581462 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9249.t1.stop1Ggra9249.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 578809..578811 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9249.t1.CDS1Ggra9249.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 578809..579501 -
Ggra9249.t1.CDS2Ggra9249.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 581014..581310 -
Ggra9249.t1.CDS3Ggra9249.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000075_pilon 581460..581462 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9249.t1.exon1Ggra9249.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 578809..579501 -
Ggra9249.t1.exon2Ggra9249.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 581014..581310 -
Ggra9249.t1.exon3Ggra9249.t1.exon3Gracilaria gracilis GNS1m maleexontig00000075_pilon 581460..581462 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9249.t1.intron1Ggra9249.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 579502..581013 -
Ggra9249.t1.intron2Ggra9249.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000075_pilon 581311..581459 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9249.t1.start1Ggra9249.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 581460..581462 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9249.t1 ID=Ggra9249.t1|Name=Ggra9249.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=331bp
MNDNDEAMFAYKGEDGLKGLAEVSTAEEFHIWHDEMERRLEEANEHKYRS
LVDGLKEDRKACLRLIETVDDALAALIKIEGGHQFVSDIVLQFKSDCEAM
ISPFDVDMSYTEHELDFFELRSLLGSVIRGELSARSLAAPPAVREKVFDS
KRELDHRVRGACESFILKTTRLILDPVLMFLAKCNALPASRSAHRVLEEG
EVPPTPPSAPFNSQKSNPESFAYPAKVKETWENVEKAVNEELAPVVERMK
IYITKPASRAVLLRPIRANVAEAATELLSVLQQRYTLEEREDIAVDGAKV
GKLLEDVDLVTGIGMRTPRSARSGSTDLVR*
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spliced messenger RNA

>Ggra9249.t1 ID=Ggra9249.t1|Name=Ggra9249.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=993bp|location=Sequence derived from alignment at tig00000075_pilon:578809..581462- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGATAACGATGAGGCTATGTTTGCATACAAAGGGGAGGATGGTTT
AAAGGGTTTAGCCGAGGTCAGCACTGCGGAAGAGTTCCATATTTGGCATG
ACGAGATGGAACGAAGACTCGAAGAAGCTAATGAACACAAATATCGATCA
CTGGTAGACGGTCTCAAAGAGGATCGAAAGGCCTGTCTGAGACTAATAGA
AACAGTAGATGATGCTTTGGCAGCTCTCATTAAGATTGAAGGCGGTCATC
AGTTTGTATCGGACATAGTTCTGCAGTTCAAGTCAGACTGCGAGGCAATG
ATCTCTCCCTTTGATGTGGATATGAGCTACACGGAACACGAACTAGATTT
CTTTGAGCTTCGATCGTTATTGGGTTCTGTCATTCGAGGGGAGCTTTCTG
CTAGATCGCTGGCAGCGCCACCTGCAGTGCGAGAAAAGGTGTTCGATTCA
AAGCGTGAGCTGGATCACCGCGTGCGAGGTGCTTGTGAGTCGTTCATTCT
AAAGACTACGCGCCTGATTCTGGACCCTGTTCTAATGTTTCTTGCGAAAT
GTAACGCACTACCGGCAAGTCGAAGCGCACACCGTGTGCTGGAAGAAGGG
GAAGTTCCACCCACTCCACCATCAGCGCCTTTCAACTCGCAAAAGTCGAA
TCCAGAATCATTTGCGTACCCTGCAAAGGTTAAGGAGACGTGGGAGAATG
TTGAAAAGGCTGTGAACGAGGAGCTGGCACCTGTGGTTGAGAGAATGAAG
ATTTATATCACAAAACCGGCATCTCGGGCTGTGCTATTACGACCGATCCG
CGCTAACGTTGCAGAGGCGGCCACTGAGCTTTTGTCGGTATTACAACAGC
GATACACGTTGGAGGAACGAGAAGATATTGCTGTTGACGGTGCGAAGGTG
GGTAAATTGCTCGAGGATGTGGATCTGGTGACTGGTATCGGAATGAGAAC
GCCTCGCTCAGCTCGTAGTGGGAGCACTGACTTGGTACGGTAG
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protein sequence of Ggra9249.t1

>Ggra9249.t1 ID=Ggra9249.t1|Name=Ggra9249.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=331bp
MNDNDEAMFAYKGEDGLKGLAEVSTAEEFHIWHDEMERRLEEANEHKYRS
LVDGLKEDRKACLRLIETVDDALAALIKIEGGHQFVSDIVLQFKSDCEAM
ISPFDVDMSYTEHELDFFELRSLLGSVIRGELSARSLAAPPAVREKVFDS
KRELDHRVRGACESFILKTTRLILDPVLMFLAKCNALPASRSAHRVLEEG
EVPPTPPSAPFNSQKSNPESFAYPAKVKETWENVEKAVNEELAPVVERMK
IYITKPASRAVLLRPIRANVAEAATELLSVLQQRYTLEEREDIAVDGAKV
GKLLEDVDLVTGIGMRTPRSARSGSTDLVR*
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mRNA from alignment at tig00000075_pilon:578809..581462-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9249.t1 ID=Ggra9249.t1|Name=Ggra9249.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2654bp|location=Sequence derived from alignment at tig00000075_pilon:578809..581462- (Gracilaria gracilis GNS1m male)
ATGGTGAGTTCTTGCGTTTATGGGAAAGCAATGCTCCTCTGACACATGAC
CAACTGCAACTATGTGCCCTTGTCGAATCACAATGTTCCACCGTTGTTCC
GGTTTCAAAAGTGTCTATAGCAAAAACTGCTGGTGCTGTTGATTCGTCAC
AGAACGATAACGATGAGGCTATGTTTGCATACAAAGGGGAGGATGGTTTA
AAGGGTTTAGCCGAGGTCAGCACTGCGGAAGAGTTCCATATTTGGCATGA
CGAGATGGAACGAAGACTCGAAGAAGCTAATGAACACAAATATCGATCAC
TGGTAGACGGTCTCAAAGAGGATCGAAAGGCCTGTCTGAGACTAATAGAA
ACAGTAGATGATGCTTTGGCAGCTCTCATTAAGATTGAAGGCGGTCATCA
GTTTGTATCGGACATAGTTCTGCAGTTCAAGTCAGACTGCGAGGCAATGG
TGTCTGAAAGGAAAACATTGGGTGAACTGGCGGACGCACTCCGAAAGCGA
CTCACCTATTTTGAGGAACTCGAGACGTTGACAGCGAAATTTGGAGGAGG
GAAGAACTCAATCAAGCCAACAGATTCCGATTTTGTCAAATTGCTGCATC
GCTTGGACGAGTGCGTGGCTTATGCATCCAGCTCAACTGGGGCAGTGGCA
GAAGCAGATGGATATCTAGCCCGTTTCCTCGAGTTGCAAAGGAGAGCTTT
TACTTCCATTCGAGACCACACGGTGACCGTCTTCCGAGACACTACAACAC
AAGTTGCGAAGGAACTTCGAGAGGATCGTCTTAATGGAGCTGGGTTTAGA
CATGCTGATCTCACCGACGCGTCCAAAGAATACCTGCGATTTCGAACCAT
CGCTCCTCGTATAAAGTCATTAATGGCAGAGCTTCATTCTAGAGCAAAGG
CAAATCCATCAAGTCCTCGTGCTGGCGCATCTATGCGACATAACGAGCTC
AATTTGTCTCCTCCCTATGCAAGAAGACCGTCTCCCACAACAGACGCTTA
TTCGAATCCATCATCCAGTGGAATGGCTGGGTTTAACGTGAATTCTATGT
TTTCAACACGAAACACTGCTCTGGGGTTGTATGCGGACTGCGAAGAAATC
TTTTTTGAACAACGGAAGCGTTTGCTTGACTCATCTGTTACCGCCCATGT
TAAATCACTAGCGGATGTGAAGAACATGATCGCTTTGGCAAGACTTGGAT
CAGCATACGTTTTGCGCGTTTGTCAATTGGAGCGCCAGCTCTATGAGCAT
TTCTTTCCATTTGACAGCGAGGAGCAAAACGAGACTCCCGTACTACATTC
AGCGCTTCGCGGTGTGTGCGATGTCGTATATACAGAATTGAGGCCACTCA
TATTGCAGGAGGATGACCTTGACAACCTGGTTTACCTTATTGAGGTTTTG
AAAACAGAGATTCTTGGTGATGAAGTTCCTCGTCGCGGGTTTGCAGGAAA
GGCGTTTGCTCCGTCTGCGGTCCGTGCTATTGCAGACGCACAGGAGCGTA
TCATTTATCGAGCCGAAGTGTATATGCGTGATGAAATCCGAGGGTTCGTT
CCAAGCCAACATCACCTCAACTACCCCGAAATCATTTTGGAGTGTAACAA
ACGAGCGTCCGCATCCTCCCTTTCCGTTGCAACTTCCGCACAAAAGTCAA
CGGACGCCGGTGAGATGGAGAACCAGTCAGAAACTGAATCAAGAGACAAG
GATAGTTTCGTTCCTGACATCCGCAGTGTGGGCATATATGCCACATGGTA
TCCACCTGTGGAGAAGACGCTTAGATTGCTTTCAATGTTGTACCGATGCG
TGGATGGGGAGGTGTTTGCAGGGGTAGCGCAGGAAGCAGTCGCGATATGT
GTTCAGAGCGTAGGTTCGGCCGCCGCACGGATTGCCGCACAAGACAAACC
GAACGCCGAGGACCATGCGCAACTGTTTCTAATCTGGCAACTACTGATGA
CCAGGGAACAGATCTCTCCCTTTGATGTGGATATGAGCTACACGGAACAC
GAACTAGATTTCTTTGAGCTTCGATCGTTATTGGGTTCTGTCATTCGAGG
GGAGCTTTCTGCTAGATCGCTGGCAGCGCCACCTGCAGTGCGAGAAAAGG
TGTTCGATTCAAAGCGTGAGCTGGATCACCGCGTGCGAGGTGCTTGTGAG
TCGTTCATTCTAAAGACTACGCGCCTGATTCTGGACCCTGTTCTAATGTT
TCTTGCGAAATGTAACGCACTACCGGCAAGTCGAAGCGCACACCGTGTGC
TGGAAGAAGGGGAAGTTCCACCCACTCCACCATCAGCGCCTTTCAACTCG
CAAAAGTCGAATCCAGAATCATTTGCGTACCCTGCAAAGGTTAAGGAGAC
GTGGGAGAATGTTGAAAAGGCTGTGAACGAGGAGCTGGCACCTGTGGTTG
AGAGAATGAAGATTTATATCACAAAACCGGCATCTCGGGCTGTGCTATTA
CGACCGATCCGCGCTAACGTTGCAGAGGCGGCCACTGAGCTTTTGTCGGT
ATTACAACAGCGATACACGTTGGAGGAACGAGAAGATATTGCTGTTGACG
GTGCGAAGGTGGGTAAATTGCTCGAGGATGTGGATCTGGTGACTGGTATC
GGAATGAGAACGCCTCGCTCAGCTCGTAGTGGGAGCACTGACTTGGTACG
GTAG
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Coding sequence (CDS) from alignment at tig00000075_pilon:578809..581462-

>Ggra9249.t1 ID=Ggra9249.t1|Name=Ggra9249.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=993bp|location=Sequence derived from alignment at tig00000075_pilon:578809..581462- (Gracilaria gracilis GNS1m male)
ATGAACGATAACGATGAGGCTATGTTTGCATACAAAGGGGAGGATGGTTT
AAAGGGTTTAGCCGAGGTCAGCACTGCGGAAGAGTTCCATATTTGGCATG
ACGAGATGGAACGAAGACTCGAAGAAGCTAATGAACACAAATATCGATCA
CTGGTAGACGGTCTCAAAGAGGATCGAAAGGCCTGTCTGAGACTAATAGA
AACAGTAGATGATGCTTTGGCAGCTCTCATTAAGATTGAAGGCGGTCATC
AGTTTGTATCGGACATAGTTCTGCAGTTCAAGTCAGACTGCGAGGCAATG
ATCTCTCCCTTTGATGTGGATATGAGCTACACGGAACACGAACTAGATTT
CTTTGAGCTTCGATCGTTATTGGGTTCTGTCATTCGAGGGGAGCTTTCTG
CTAGATCGCTGGCAGCGCCACCTGCAGTGCGAGAAAAGGTGTTCGATTCA
AAGCGTGAGCTGGATCACCGCGTGCGAGGTGCTTGTGAGTCGTTCATTCT
AAAGACTACGCGCCTGATTCTGGACCCTGTTCTAATGTTTCTTGCGAAAT
GTAACGCACTACCGGCAAGTCGAAGCGCACACCGTGTGCTGGAAGAAGGG
GAAGTTCCACCCACTCCACCATCAGCGCCTTTCAACTCGCAAAAGTCGAA
TCCAGAATCATTTGCGTACCCTGCAAAGGTTAAGGAGACGTGGGAGAATG
TTGAAAAGGCTGTGAACGAGGAGCTGGCACCTGTGGTTGAGAGAATGAAG
ATTTATATCACAAAACCGGCATCTCGGGCTGTGCTATTACGACCGATCCG
CGCTAACGTTGCAGAGGCGGCCACTGAGCTTTTGTCGGTATTACAACAGC
GATACACGTTGGAGGAACGAGAAGATATTGCTGTTGACGGTGCGAAGGTG
GGTAAATTGCTCGAGGATGTGGATCTGGTGACTGGTATCGGAATGAGAAC
GCCTCGCTCAGCTCGTAGTGGGAGCACTGACTTGGTACGGTAG
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