Ggra9185.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9185.t1
Unique NameGgra9185.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length455
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:327752..329686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog176946.XP_007421219.1
PFAMsAA_kinase
Max annot lvl33208|Metazoa
Evalue5.13e-24
EggNOG OGsCOG1608@1|root,2QQ1X@2759|Eukaryota,3A6FM@33154|Opisthokonta,3BQJJ@33208|Metazoa,3DAHK@33213|Bilateria,48JFE@7711|Chordata,49GJK@7742|Vertebrata
DescriptionAmino acid kinase family
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9185Ggra9185Gracilaria gracilis GNS1m malegenetig00000075_pilon 327752..329686 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9185.t1Ggra9185.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 327752..329686 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9185.t1.start1Ggra9185.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 327752..327754 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9185.t1.CDS1Ggra9185.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 327752..328507 +
Ggra9185.t1.CDS2Ggra9185.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 329078..329686 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9185.t1.exon1Ggra9185.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 327752..328507 +
Ggra9185.t1.exon2Ggra9185.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 329078..329686 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9185.t1.intron1Ggra9185.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 328508..329077 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9185.t1.stop1Ggra9185.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 329684..329686 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9185.t1 ID=Ggra9185.t1|Name=Ggra9185.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=455bp
MATNASSSLSLSLSSSPPLSSPPPSSPPPLPPPLPVLPPPPRVELVVKLG
GSALTHKSKPHTLHQQRFDHCMDTMAALYHARVGFILIHGAGSFGHFEAK
QHNVLRGDAPPLPMALTHAAVCALNARVVRALLARRVPAVGVSPLLVPAR
WRQQFVATLLDRAHVPVLHGDVAYGADGRTGILSGDALATHLSRAFRAVK
RVVFLCDVPGVLSCWPNGHLLRSILVDAAGVPQLSAAQCDALRESPAALP
HDPDLDYLLAVGVSQPPPPPPASAAPPGVPLPLPLSVAPPPPPPAPSAIA
AAPSAIAAVAPVVSAAVAPPPSAAPHNPKKRPLDEKKARDRKRVLRNREL
ARVSNERRKGRIKAMENELSETRKTVTTLEESIRCLEAENNELRNLLQGK
PPAASPAVAAVAAVAANSTQLTPAAAAAAALSHPDAVPSVPSSQPPASDT
LPPQ*
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spliced messenger RNA

>Ggra9185.t1 ID=Ggra9185.t1|Name=Ggra9185.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00000075_pilon:327752..329686+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggccaccaacgcgtcgtcgtcgttgtcgttgtcgttgtcgtcgtcgcc
gcctttgtcgtcgccgccgccttcgtcgccgccgccgctgccgccgccac
tgcccgtgctgccgccgccgccgcGCGTGGAGCTGGTGGTCAAGCTGGGC
GGCTCGGCGCTCACGCACAAGAGCAAGCCGCACACCCTGCACCAGCAGCG
TTTCGACCACTGCATGGACACCATGGCCGCGCTGTACCACGCGCGCGTGG
GCTTCATCCTCATCCACGGCGCGGGCTCGTTCGGCCACTTTGAGGCCAAG
CAACACAACGTGCTGCGCGGCGACGCGCCGCCGCTGCCCATGGCGCTCAC
GCACGCCGCCGTGTGCGCGCTCAACGCGCGCGTGGTGCGAGCGTTGCTGG
CGCGCCGCGTGCCGGCCGTGGGCGTGTCGCCGCTGCTGGTGCCGGCGCGC
TGGCGTCAACAGTTTGTAGCCACGCTGCTGGACCGCGCGCACGTGCCCGT
GCTGCACGGCGACGTCGCGTACGGCGCGGACGGCCGCACCGGTATCCTGT
CCGGCGACGCGCTGGCCACCCATCTCAGCCGCGCCTTCCGCGCCGTCAAG
CGCGTCGTGTTCCTGTGTGACGTGCCGGGCGTGCTCAGTTGCTGGCCAAA
CGGCCATCTGCTGCGCTCCATCCTCGTGGACGCCGCCGGCGTGCCGCAGC
TCAGCGCCGCGCAATGCGACGCGCTGCGTGAAAgccccgccgcgctgccg
cacgacCCCGACCTGGACTACCTGCTGGCCGTGGGCGTGTcgcagccgcc
gccgccgcccccggcgtcggctgcgccgcccggcgtgccgctcccgctcc
cgctgtccgtggcgccgccgccgccgccgcccgcgccgtccgccattgcg
gccgcgccgtccgccattgcggccgtggcgcccgtcgtgtcggccgccgt
ggcgccgccgccgtccgccgcgccgcACAACCCCAAGAAGCGCCCGCTCG
ACGAGAAGAAGGCGCGCGACCGCAAGCGCGTGCTGCGCAACCGCGAGCTG
GCGCGCGTCAGTAACGAGCGCCGCAAGGGCCGTATCAAGGCCATGGAGAA
CGAGCTCAGCGAGACGCGCAAGACCGTCACCACCCTGGAGGAGAGCATCC
GCTGTTTGGAGGCGGAGAACAATGAGCTACGAAACTTGTTGCAgggcaag
ccgcccgccgcatcacccgccgtcgctgccgtcgccgccgtggccgccaa
ttccacacagctcaccccggctgctgccgctgccgccgcgCTGTCGCATC
CCGACGCCGTCCCGTCTGTGCCGTCTTCGCAGCCGCCGGCCAGTGATACC
TTGCCGCCGCAATGA
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protein sequence of Ggra9185.t1

>Ggra9185.t1 ID=Ggra9185.t1|Name=Ggra9185.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=455bp
MATNASSSLSLSLSSSPPLSSPPPSSPPPLPPPLPVLPPPPRVELVVKLG
GSALTHKSKPHTLHQQRFDHCMDTMAALYHARVGFILIHGAGSFGHFEAK
QHNVLRGDAPPLPMALTHAAVCALNARVVRALLARRVPAVGVSPLLVPAR
WRQQFVATLLDRAHVPVLHGDVAYGADGRTGILSGDALATHLSRAFRAVK
RVVFLCDVPGVLSCWPNGHLLRSILVDAAGVPQLSAAQCDALRESPAALP
HDPDLDYLLAVGVSQPPPPPPASAAPPGVPLPLPLSVAPPPPPPAPSAIA
AAPSAIAAVAPVVSAAVAPPPSAAPHNPKKRPLDEKKARDRKRVLRNREL
ARVSNERRKGRIKAMENELSETRKTVTTLEESIRCLEAENNELRNLLQGK
PPAASPAVAAVAAVAANSTQLTPAAAAAAALSHPDAVPSVPSSQPPASDT
LPPQ*
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mRNA from alignment at tig00000075_pilon:327752..329686+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9185.t1 ID=Ggra9185.t1|Name=Ggra9185.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1935bp|location=Sequence derived from alignment at tig00000075_pilon:327752..329686+ (Gracilaria gracilis GNS1m male)
atggccaccaacgcgtcgtcgtcgttgtcgttgtcgttgtcgtcgtcgcc
gcctttgtcgtcgccgccgccttcgtcgccgccgccgctgccgccgccac
tgcccgtgctgccgccgccgccgcGCGTGGAGCTGGTGGTCAAGCTGGGC
GGCTCGGCGCTCACGCACAAGAGCAAGCCGCACACCCTGCACCAGCAGCG
TTTCGACCACTGCATGGACACCATGGCCGCGCTGTACCACGCGCGCGTGG
GCTTCATCCTCATCCACGGCGCGGGCTCGTTCGGCCACTTTGAGGCCAAG
CAACACAACGTGCTGCGCGGCGACGCGCCGCCGCTGCCCATGGCGCTCAC
GCACGCCGCCGTGTGCGCGCTCAACGCGCGCGTGGTGCGAGCGTTGCTGG
CGCGCCGCGTGCCGGCCGTGGGCGTGTCGCCGCTGCTGGTGCCGGCGCGC
TGGCGTCAACAGTTTGTAGCCACGCTGCTGGACCGCGCGCACGTGCCCGT
GCTGCACGGCGACGTCGCGTACGGCGCGGACGGCCGCACCGGTATCCTGT
CCGGCGACGCGCTGGCCACCCATCTCAGCCGCGCCTTCCGCGCCGTCAAG
CGCGTCGTGTTCCTGTGTGACGTGCCGGGCGTGCTCAGTTGCTGGCCAAA
CGGCCATCTGCTGCGCTCCATCCTCGTGGACGCCGCCGGCGTGCCGCAGC
TCAGCGCCGCGCAATGCGACGCGCTGCGTGAAAgccccgccgcgctgccg
cacgacgtctccggcgctatggccgccaagctgcgcgccgccgcgcgctg
cgtcgccgatggcgctggccgcgtcaccgccttcatcgccgccgccgacc
agcccgccgcgcagcacgcgctgctgtgggcgcccgaccgcgcgcgcgag
gccgcgtgcacgcgcctcagcttcgacgcctccgcctccgccgccgccgc
cgtcgccccgccgtcgccatcgccgctgctgccgccgccgctgcagccgt
cgccgccgtcgcgctcacccaccacacagaccgcgtcgccgcgcgagaag
cgcCGCCGCCGCGGCTGGCGCGGCGCGCGCCACTCGCGCTGAGCATGTGA
GAGCAGAGCACATTTTTGCCGCGTCAAGCGCGCCACGCCGCCGCCGCTTA
TTGgcgcgcgtgcgcggcgtgccgcgcgccgcgcgtggcacgcgcgcgtt
gctgcgcgccacgcgcggccgcgctggcgcgcagcgccgtcttcttgaga
gagcgccgcgccggcacgagcggccgccgtcgcgcgcgcgGCCGTCTGCC
GCGCTATGGATCCCGCTTCCGACCAGCCCGACCTGGACTACCTGCTGGCC
GTGGGCGTGTcgcagccgccgccgccgcccccggcgtcggctgcgccgcc
cggcgtgccgctcccgctcccgctgtccgtggcgccgccgccgccgccgc
ccgcgccgtccgccattgcggccgcgccgtccgccattgcggccgtggcg
cccgtcgtgtcggccgccgtggcgccgccgccgtccgccgcgccgcACAA
CCCCAAGAAGCGCCCGCTCGACGAGAAGAAGGCGCGCGACCGCAAGCGCG
TGCTGCGCAACCGCGAGCTGGCGCGCGTCAGTAACGAGCGCCGCAAGGGC
CGTATCAAGGCCATGGAGAACGAGCTCAGCGAGACGCGCAAGACCGTCAC
CACCCTGGAGGAGAGCATCCGCTGTTTGGAGGCGGAGAACAATGAGCTAC
GAAACTTGTTGCAgggcaagccgcccgccgcatcacccgccgtcgctgcc
gtcgccgccgtggccgccaattccacacagctcaccccggctgctgccgc
tgccgccgcgCTGTCGCATCCCGACGCCGTCCCGTCTGTGCCGTCTTCGC
AGCCGCCGGCCAGTGATACCTTGCCGCCGCAATGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:327752..329686+

>Ggra9185.t1 ID=Ggra9185.t1|Name=Ggra9185.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1365bp|location=Sequence derived from alignment at tig00000075_pilon:327752..329686+ (Gracilaria gracilis GNS1m male)
atggccaccaacgcgtcgtcgtcgttgtcgttgtcgttgtcgtcgtcgcc
gcctttgtcgtcgccgccgccttcgtcgccgccgccgctgccgccgccac
tgcccgtgctgccgccgccgccgcGCGTGGAGCTGGTGGTCAAGCTGGGC
GGCTCGGCGCTCACGCACAAGAGCAAGCCGCACACCCTGCACCAGCAGCG
TTTCGACCACTGCATGGACACCATGGCCGCGCTGTACCACGCGCGCGTGG
GCTTCATCCTCATCCACGGCGCGGGCTCGTTCGGCCACTTTGAGGCCAAG
CAACACAACGTGCTGCGCGGCGACGCGCCGCCGCTGCCCATGGCGCTCAC
GCACGCCGCCGTGTGCGCGCTCAACGCGCGCGTGGTGCGAGCGTTGCTGG
CGCGCCGCGTGCCGGCCGTGGGCGTGTCGCCGCTGCTGGTGCCGGCGCGC
TGGCGTCAACAGTTTGTAGCCACGCTGCTGGACCGCGCGCACGTGCCCGT
GCTGCACGGCGACGTCGCGTACGGCGCGGACGGCCGCACCGGTATCCTGT
CCGGCGACGCGCTGGCCACCCATCTCAGCCGCGCCTTCCGCGCCGTCAAG
CGCGTCGTGTTCCTGTGTGACGTGCCGGGCGTGCTCAGTTGCTGGCCAAA
CGGCCATCTGCTGCGCTCCATCCTCGTGGACGCCGCCGGCGTGCCGCAGC
TCAGCGCCGCGCAATGCGACGCGCTGCGTGAAAgccccgccgcgctgccg
cacgacCCCGACCTGGACTACCTGCTGGCCGTGGGCGTGTcgcagccgcc
gccgccgcccccggcgtcggctgcgccgcccggcgtgccgctcccgctcc
cgctgtccgtggcgccgccgccgccgccgcccgcgccgtccgccattgcg
gccgcgccgtccgccattgcggccgtggcgcccgtcgtgtcggccgccgt
ggcgccgccgccgtccgccgcgccgcACAACCCCAAGAAGCGCCCGCTCG
ACGAGAAGAAGGCGCGCGACCGCAAGCGCGTGCTGCGCAACCGCGAGCTG
GCGCGCGTCAGTAACGAGCGCCGCAAGGGCCGTATCAAGGCCATGGAGAA
CGAGCTCAGCGAGACGCGCAAGACCGTCACCACCCTGGAGGAGAGCATCC
GCTGTTTGGAGGCGGAGAACAATGAGCTACGAAACTTGTTGCAgggcaag
ccgcccgccgcatcacccgccgtcgctgccgtcgccgccgtggccgccaa
ttccacacagctcaccccggctgctgccgctgccgccgcgCTGTCGCATC
CCGACGCCGTCCCGTCTGTGCCGTCTTCGCAGCCGCCGGCCAGTGATACC
TTGCCGCCGCAATGA
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