Ggra9171.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9171.t1
Unique NameGgra9171.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length554
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:289303..291041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707714.1
PFAMsPH,Pkinase
Max annot lvl2759|Eukaryota
KEGG koko:K04456,ko:K13303
KEGG Pathwayko01521,ko01522,ko01524,ko04010,ko04012,ko04014,ko04015,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04140,ko04150,ko04151,ko04152,ko04210,ko04211,ko04212,ko04213,ko04218,ko04261,ko04370,ko04371,ko04380,ko04510,ko04550,ko04611,ko04620,ko04630,ko04660,ko04662,ko04664,ko04666,ko04668,ko04722,ko04725,ko04728,ko04910,ko04914,ko04915,ko04917,ko04919,ko04920,ko04922,ko04923,ko04926,ko04931,ko04932,ko04933,ko04973,ko05142,ko05145,ko05152,ko05160,ko05161,ko05162,ko05164,ko05165,ko05166,ko05167,ko05169,ko05200,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05218,ko05220,ko05221,ko05222,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,ko05418,map01521,map01522,map01524,map04010,map04012,map04014,map04015,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04140,map04150,map04151,map04152,map04210,map04211,map04212,map04213,map04218,map04261,map04370,map04371,map04380,map04510,map04550,map04611,map04620,map04630,map04660,map04662,map04664,map04666,map04668,map04722,map04725,map04728,map04910,map04914,map04915,map04917,map04919,map04920,map04922,map04923,map04926,map04931,map04932,map04933,map04973,map05142,map05145,map05152,map05160,map05161,map05162,map05164,map05165,map05166,map05167,map05169,map05200,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05218,map05220,map05221,map05222,map05223,map05224,map05225,map05226,map05230,map05231,map05418
KEGG ModuleM00676
Evalue2.12e-53
EggNOG OGsKOG0598@1|root,KOG0598@2759|Eukaryota
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9171Ggra9171Gracilaria gracilis GNS1m malegenetig00000075_pilon 289303..291041 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9171.t1Ggra9171.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 289303..291041 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9171.t1.stop1Ggra9171.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 289303..289305 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9171.t1.CDS1Ggra9171.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 289303..289795 -
Ggra9171.t1.CDS2Ggra9171.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 289873..291041 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9171.t1.exon1Ggra9171.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 289303..289795 -
Ggra9171.t1.exon2Ggra9171.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 289873..291041 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9171.t1.intron1Ggra9171.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 289796..289872 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9171.t1.start1Ggra9171.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 291039..291041 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9171.t1 ID=Ggra9171.t1|Name=Ggra9171.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=554bp
MPEWALLRSRYENKQTGIEKMISRRYKPQSLAAHFASLPNKKGLANSDEH
MKLFMGQALIASGEAYFKTARFQRAKRYYAELRGSTIVIFRAEIEEQQEL
STIDDVVSVFPLHQYHICIEQRDDGSSRVCLGHDKAVDNEIMHIRVKRNE
EDLKAWRHGLTEVIRYPIPNLSNLRIESIIGRGGGGKVFMVQSSQDAKLY
ALKVIDKIHTFKTAKAFRHVSSERLIMEKSGNHPFLLHVEFAFQSDASLF
IASPFCPGGDLASYIKQKGIKSIPFDGRDYVQAAHSGRLKRYPRLTESQA
RRIACEIILGLEHLHSRGIVYRDMKPENIFIDETGHVKIGDFGLAKQLFE
YESGTWPHRTTSICGTRNYLSPEMLAGNHIRLKQICGVLGNEKLYLPMWV
STEARELLRGLLQKDPRKRLTIGKAKRHPFFLNMDWDAVFNKRSSPCVSD
IRMGGRVSDVLENFDLSKLEGVSVGDYLSGQIDENSSHIPPPHQRDPRGI
MIGFEYVHKDKSRIDEHSELLVKQRSGGLLSRITSIDFDQLTSPRSIFSS
GSK*
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spliced messenger RNA

>Ggra9171.t1 ID=Ggra9171.t1|Name=Ggra9171.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1662bp|location=Sequence derived from alignment at tig00000075_pilon:289303..291041- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGAATGGGCCCTTCTGAGAAGTCGATATGAGAATAAACAGACAGG
AATTGAGAAGATGATATCCCGACGATATAAACCTCAGTCCTTGGCTGCGC
ACTTCGCCTCTCTCCCAAACAAGAAAGGGCTGGCTAACTCAGATGAACAC
ATGAAGTTATTTATGGGACAAGCCCTGATAGCTTCCGGAGAAGCGTACTT
CAAAACTGCGAGGTTCCAACGAGCAAAGCGATACTACGCAGAACTACGAG
GGTCGACAATCGTTATATTTCGAGCAGAGATTGAAGAACAACAGGAGCTT
TCCACTATTGACGACGTGGTGTCCGTATTTCCGCTTCATCAGTACCATAT
TTGTATAGAACAGAGGGACGATGGGAGTTCCCGAGTCTGCTTGGGACATG
ACAAAGCGGTCGATAACGAGATTATGCATATTCGCGTAAAACGCAATGAA
GAAGATTTAAAAGCATGGCGACATGGATTGACGGAGGTTATAAGATATCC
AATACCGAACCTATCCAACCTGAGGATCGAATCCATTATTGGAAGGGGTG
GAGGCGGGAAAGTATTCATGGTCCAATCATCACAAGATGCAAAGTTGTAT
GCTCTGAAGGTCATTGACAAGATTCATACTTTCAAAACTGCGAAGGCCTT
TCGGCACGTATCTTCAGAGAGACTTATCATGGAGAAGTCTGGAAATCACC
CTTTTCTCCTTCACGTTGAGTTTGCCTTCCAATCCGACGCCAGTTTGTTC
ATCGCCTCACCATTCTGCCCAGGAGGGGACTTAGCATCGTACATAAAGCA
AAAGGGTATCAAGAGCATACCATTTGATGGCAGAGACTACGTTCAGGCAG
CACATTCTGGTCGTCTGAAGCGATACCCGAGACTGACTGAGTCCCAAGCG
AGACGCATAGCTTGTGAAATAATTCTTGGCCTGGAACATCTACACTCGAG
AGGCATAGTGTATCGCGACATGAAGCCTGAGAACATATTCATAGACGAGA
CAGGTCATGTGAAAATTGGAGACTTCGGATTAGCTAAGCAGTTGTTTGAA
TATGAAAGTGGAACATGGCCACATAGGACCACAAGCATATGCGGAACGAG
AAACTACCTTTCTCCGGAAATGTTAGCCGGCAACCATATTCGTTTGAAGC
AGATATGTGGAGTTTTGGGAAACGAGAAACTGTATCTTCCGATGTGGGTT
TCAACAGAGGCGCGGGAACTGCTCAGAGGTCTGTTGCAAAAAGATCCCAG
GAAAAGACTGACAATTGGGAAAGCTAAACGACATCCGTTCTTCCTAAACA
TGGACTGGGACGCAGTATTTAACAAAAGATCTTCACCATGTGTTTCAGAT
ATACGTATGGGTGGCAGAGTATCAGACGTCTTGGAAAATTTCGACCTCAG
CAAGCTTGAGGGAGTGAGTGTTGGAGACTATCTGAGTGGACAAATTGACG
AGAACTCGTCACATATTCCCCCGCCTCATCAACGGGACCCGAGAGGAATC
ATGATTGGTTTCGAATATGTGCATAAAGACAAATCCCGTATCGACGAACA
TTCTGAGCTCCTGGTGAAGCAAAGAAGTGGAGGGTTGCTTTCTAGGATTA
CTTCAATTGACTTCGACCAACTCACTTCCCCTAGATCTATATTTTCCAGC
GGTAGTAAATGA
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protein sequence of Ggra9171.t1

>Ggra9171.t1 ID=Ggra9171.t1|Name=Ggra9171.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=554bp
MPEWALLRSRYENKQTGIEKMISRRYKPQSLAAHFASLPNKKGLANSDEH
MKLFMGQALIASGEAYFKTARFQRAKRYYAELRGSTIVIFRAEIEEQQEL
STIDDVVSVFPLHQYHICIEQRDDGSSRVCLGHDKAVDNEIMHIRVKRNE
EDLKAWRHGLTEVIRYPIPNLSNLRIESIIGRGGGGKVFMVQSSQDAKLY
ALKVIDKIHTFKTAKAFRHVSSERLIMEKSGNHPFLLHVEFAFQSDASLF
IASPFCPGGDLASYIKQKGIKSIPFDGRDYVQAAHSGRLKRYPRLTESQA
RRIACEIILGLEHLHSRGIVYRDMKPENIFIDETGHVKIGDFGLAKQLFE
YESGTWPHRTTSICGTRNYLSPEMLAGNHIRLKQICGVLGNEKLYLPMWV
STEARELLRGLLQKDPRKRLTIGKAKRHPFFLNMDWDAVFNKRSSPCVSD
IRMGGRVSDVLENFDLSKLEGVSVGDYLSGQIDENSSHIPPPHQRDPRGI
MIGFEYVHKDKSRIDEHSELLVKQRSGGLLSRITSIDFDQLTSPRSIFSS
GSK*
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mRNA from alignment at tig00000075_pilon:289303..291041-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9171.t1 ID=Ggra9171.t1|Name=Ggra9171.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1739bp|location=Sequence derived from alignment at tig00000075_pilon:289303..291041- (Gracilaria gracilis GNS1m male)
ATGCCGGAATGGGCCCTTCTGAGAAGTCGATATGAGAATAAACAGACAGG
AATTGAGAAGATGATATCCCGACGATATAAACCTCAGTCCTTGGCTGCGC
ACTTCGCCTCTCTCCCAAACAAGAAAGGGCTGGCTAACTCAGATGAACAC
ATGAAGTTATTTATGGGACAAGCCCTGATAGCTTCCGGAGAAGCGTACTT
CAAAACTGCGAGGTTCCAACGAGCAAAGCGATACTACGCAGAACTACGAG
GGTCGACAATCGTTATATTTCGAGCAGAGATTGAAGAACAACAGGAGCTT
TCCACTATTGACGACGTGGTGTCCGTATTTCCGCTTCATCAGTACCATAT
TTGTATAGAACAGAGGGACGATGGGAGTTCCCGAGTCTGCTTGGGACATG
ACAAAGCGGTCGATAACGAGATTATGCATATTCGCGTAAAACGCAATGAA
GAAGATTTAAAAGCATGGCGACATGGATTGACGGAGGTTATAAGATATCC
AATACCGAACCTATCCAACCTGAGGATCGAATCCATTATTGGAAGGGGTG
GAGGCGGGAAAGTATTCATGGTCCAATCATCACAAGATGCAAAGTTGTAT
GCTCTGAAGGTCATTGACAAGATTCATACTTTCAAAACTGCGAAGGCCTT
TCGGCACGTATCTTCAGAGAGACTTATCATGGAGAAGTCTGGAAATCACC
CTTTTCTCCTTCACGTTGAGTTTGCCTTCCAATCCGACGCCAGTTTGTTC
ATCGCCTCACCATTCTGCCCAGGAGGGGACTTAGCATCGTACATAAAGCA
AAAGGGTATCAAGAGCATACCATTTGATGGCAGAGACTACGTTCAGGCAG
CACATTCTGGTCGTCTGAAGCGATACCCGAGACTGACTGAGTCCCAAGCG
AGACGCATAGCTTGTGAAATAATTCTTGGCCTGGAACATCTACACTCGAG
AGGCATAGTGTATCGCGACATGAAGCCTGAGAACATATTCATAGACGAGA
CAGGTCATGTGAAAATTGGAGACTTCGGATTAGCTAAGCAGTTGTTTGAA
TATGAAAGTGGAACATGGCCACATAGGACCACAAGCATATGCGGAACGAG
AAACTACCTTTCTCCGGAAATGTTAGCCGGCAACCATATTCGTTTGAAGC
AGATATGTGGAGTTTTGGGGTAATGCTGTACAGAATAATAGTCGGTACGT
TTCCCTTTGATGCACATCGGACGCGAGACGTGTTTCAACGCATAAGAAAC
GAGAAACTGTATCTTCCGATGTGGGTTTCAACAGAGGCGCGGGAACTGCT
CAGAGGTCTGTTGCAAAAAGATCCCAGGAAAAGACTGACAATTGGGAAAG
CTAAACGACATCCGTTCTTCCTAAACATGGACTGGGACGCAGTATTTAAC
AAAAGATCTTCACCATGTGTTTCAGATATACGTATGGGTGGCAGAGTATC
AGACGTCTTGGAAAATTTCGACCTCAGCAAGCTTGAGGGAGTGAGTGTTG
GAGACTATCTGAGTGGACAAATTGACGAGAACTCGTCACATATTCCCCCG
CCTCATCAACGGGACCCGAGAGGAATCATGATTGGTTTCGAATATGTGCA
TAAAGACAAATCCCGTATCGACGAACATTCTGAGCTCCTGGTGAAGCAAA
GAAGTGGAGGGTTGCTTTCTAGGATTACTTCAATTGACTTCGACCAACTC
ACTTCCCCTAGATCTATATTTTCCAGCGGTAGTAAATGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:289303..291041-

>Ggra9171.t1 ID=Ggra9171.t1|Name=Ggra9171.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1662bp|location=Sequence derived from alignment at tig00000075_pilon:289303..291041- (Gracilaria gracilis GNS1m male)
ATGCCGGAATGGGCCCTTCTGAGAAGTCGATATGAGAATAAACAGACAGG
AATTGAGAAGATGATATCCCGACGATATAAACCTCAGTCCTTGGCTGCGC
ACTTCGCCTCTCTCCCAAACAAGAAAGGGCTGGCTAACTCAGATGAACAC
ATGAAGTTATTTATGGGACAAGCCCTGATAGCTTCCGGAGAAGCGTACTT
CAAAACTGCGAGGTTCCAACGAGCAAAGCGATACTACGCAGAACTACGAG
GGTCGACAATCGTTATATTTCGAGCAGAGATTGAAGAACAACAGGAGCTT
TCCACTATTGACGACGTGGTGTCCGTATTTCCGCTTCATCAGTACCATAT
TTGTATAGAACAGAGGGACGATGGGAGTTCCCGAGTCTGCTTGGGACATG
ACAAAGCGGTCGATAACGAGATTATGCATATTCGCGTAAAACGCAATGAA
GAAGATTTAAAAGCATGGCGACATGGATTGACGGAGGTTATAAGATATCC
AATACCGAACCTATCCAACCTGAGGATCGAATCCATTATTGGAAGGGGTG
GAGGCGGGAAAGTATTCATGGTCCAATCATCACAAGATGCAAAGTTGTAT
GCTCTGAAGGTCATTGACAAGATTCATACTTTCAAAACTGCGAAGGCCTT
TCGGCACGTATCTTCAGAGAGACTTATCATGGAGAAGTCTGGAAATCACC
CTTTTCTCCTTCACGTTGAGTTTGCCTTCCAATCCGACGCCAGTTTGTTC
ATCGCCTCACCATTCTGCCCAGGAGGGGACTTAGCATCGTACATAAAGCA
AAAGGGTATCAAGAGCATACCATTTGATGGCAGAGACTACGTTCAGGCAG
CACATTCTGGTCGTCTGAAGCGATACCCGAGACTGACTGAGTCCCAAGCG
AGACGCATAGCTTGTGAAATAATTCTTGGCCTGGAACATCTACACTCGAG
AGGCATAGTGTATCGCGACATGAAGCCTGAGAACATATTCATAGACGAGA
CAGGTCATGTGAAAATTGGAGACTTCGGATTAGCTAAGCAGTTGTTTGAA
TATGAAAGTGGAACATGGCCACATAGGACCACAAGCATATGCGGAACGAG
AAACTACCTTTCTCCGGAAATGTTAGCCGGCAACCATATTCGTTTGAAGC
AGATATGTGGAGTTTTGGGAAACGAGAAACTGTATCTTCCGATGTGGGTT
TCAACAGAGGCGCGGGAACTGCTCAGAGGTCTGTTGCAAAAAGATCCCAG
GAAAAGACTGACAATTGGGAAAGCTAAACGACATCCGTTCTTCCTAAACA
TGGACTGGGACGCAGTATTTAACAAAAGATCTTCACCATGTGTTTCAGAT
ATACGTATGGGTGGCAGAGTATCAGACGTCTTGGAAAATTTCGACCTCAG
CAAGCTTGAGGGAGTGAGTGTTGGAGACTATCTGAGTGGACAAATTGACG
AGAACTCGTCACATATTCCCCCGCCTCATCAACGGGACCCGAGAGGAATC
ATGATTGGTTTCGAATATGTGCATAAAGACAAATCCCGTATCGACGAACA
TTCTGAGCTCCTGGTGAAGCAAAGAAGTGGAGGGTTGCTTTCTAGGATTA
CTTCAATTGACTTCGACCAACTCACTTCCCCTAGATCTATATTTTCCAGC
GGTAGTAAATGA
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