Ggra9197.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9197.t1
Unique Name	Ggra9197.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	437

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:361243..362553 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5011.R4X8L7
PFAMs	DUF1764
Max annot lvl	4751\|Fungi
Evalue	0.000437
EggNOG OGs	2E28N@1\|root,2SCT1@2759\|Eukaryota,3AC0C@33154\|Opisthokonta,3P921@4751\|Fungi,3R002@4890\|Ascomycota,3MD9Z@451866\|Taphrinomycotina
Description	Eukaryotic protein of unknown function (DUF1764)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9197	Ggra9197	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 361243..362553 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9197.t1.start1	Ggra9197.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 361243..361245 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9197.t1.CDS1	Ggra9197.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 361243..362553 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9197.t1.exon1	Ggra9197.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 361243..362553 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9197.t1.stop1	Ggra9197.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 362551..362553 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9197.t1	Ggra9197.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 361243..362553 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:361243..362553+
coding sequence from alignment at tig00000075_pilon:361243..362553+

mRNA sequence

>Ggra9197.t1 ID=Ggra9197.t1|Name=Ggra9197.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=437bp
MSKTRQQISKRKRRLRRIQRRRLQKVRRQQHAQLVAAGAARQARQKAVQN
WLQEEKRREKRTSNRLESPNKPRVRFADNVYVTEIPNVPAHSLPKPVSSP
TGVRLVREREEQQARDIAKLGLHDAMPFSLLCAPDDDYDEDDDPDFVPDV
LAEHINIQLPVLTRPKRRLIPHSVPVSNSSDSEPSKRHKKAFPNASPAST
PPKPSQRQNKSPKQSTEHSNNASSTKANAVGQSSERKRTLSQMLSTQDAT
SADTSQDAVDRPPSSVKASDSPRRRKKKRRKLSNVAQTDQGATHQPLSPK
PAESNASPKKAQPAASPSQNGPNSPKVNSALVEDHVGKQNGTLSNDDNND
SDIDAMFGHMVRRKAQVKAEQRNRKKAENPNGEKPVSAGDKRKSQKRKGP
TRYTEEGFRIMSYDDIKADQPAGLNGDCPFDCSCCF*

spliced messenger RNA

>Ggra9197.t1 ID=Ggra9197.t1|Name=Ggra9197.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1311bp|location=Sequence derived from alignment at tig00000075_pilon:361243..362553+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAAAACACGGCAGCAAATCTCGAAGAGGAAGCGACGACTTCGTCG
TATACAACGTCGACGTTTGCAAAAGGTGCGTCGACAACAGCATGCACAGC
TCGTGGCCGCCGGAGCTGCGCGACAGGCCAGGCAAAAGGCGGTACAGAAT
TGGCTTCAAGAAGAGAAACGGCGCGAGAAACGCACTTCAAATCGTCTAGA
ATCTCCCAACAAACCGCGCGTACGATTCGCTGATAATGTCTACGTCACTG
AGATTCCGAACGTGCCGGCGCATAGTTTACCGAAGCCGGTGTCGTCGCCG
ACGGGTGTTCGACTCGTGAGAGAAAGAGAGGAGCAGCAAGCCCGCGACAT
TGCCAAGCTGGGTCTGCATGATGCCATGCCCTTCTCGCTTCTTTGTGCGC
CGgacgatgattacgatgaagatgatgatCCGGATTTTGTGCCCGATGTG
CTGGCGGAGCACATTAACATTCAGCTCCCTGTCCTTACCAGACCAAAACG
CCGTCTCATTCCTCACTCCGTTCCAGTTTCAAATTCTTCAGATTCTGAAC
CGTCCAAGCGCCACAAGAAGGCTTTTCCAAATGCTTCTCCAGCTTCCACG
CCGCCGAAACCATCACAGCGTCAAAACAAATCACCCAAGCAATCAACAGA
GCACTCTAACAATGCCTCATCAACCAAAGCCAATGCCGTTGGCCAGTCTT
CAGAGAGAAAACGAACCCTTTCTCAAATGCTGAGCACTCAAGATGCTACA
TCCGCAGACACTTCGCAAGATGCGGTGGACCGACCACCCTCTTCTGTAAA
AGCTTCAGACTCTCCAAGACGCCGCAAGAAGAAGAGGCGAAAGCTTTCAA
ATGTCGCTCAAACCGACCAAGGCGCCACGCACCAACCGCTGTCACCTAAG
CCCGCTGAGAGTAATGCTTCCCCGAAGAAGGCCCAACCAGCTGCAAGCCC
TTCCCAAAACGGTCCAAATTCGCCAAAAGTGAACTCCGCTCTTGTCGAGG
ATCATGTCGGGAAACAGAATGGTACTTTGTCGAACGACGATAATAATGAC
TCGGACATTGACGCCATGTTCGGCCACATGGTGCGGCGCAAAGCACAAGT
CAAGGCTGAGCAACGCAACCGAAAAAAGGCGGAAAACCCTAACGGCGAAA
AGCCTGTCAGTGCCGGCGATAAGCGAAAGTCACAGAAGAGGAAAGGCCCG
ACAAGATACACAGAAGAAGGGTTCCGTATCATGAGCTACGATGATATCAA
AGCTGATCAGCCAGCGGGCTTAAACGGTGATTGTCCATTTGATTGTTCTT
GTTGTTTTTGA

protein sequence of Ggra9197.t1

>Ggra9197.t1 ID=Ggra9197.t1|Name=Ggra9197.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=437bp
MSKTRQQISKRKRRLRRIQRRRLQKVRRQQHAQLVAAGAARQARQKAVQN
WLQEEKRREKRTSNRLESPNKPRVRFADNVYVTEIPNVPAHSLPKPVSSP
TGVRLVREREEQQARDIAKLGLHDAMPFSLLCAPDDDYDEDDDPDFVPDV
LAEHINIQLPVLTRPKRRLIPHSVPVSNSSDSEPSKRHKKAFPNASPAST
PPKPSQRQNKSPKQSTEHSNNASSTKANAVGQSSERKRTLSQMLSTQDAT
SADTSQDAVDRPPSSVKASDSPRRRKKKRRKLSNVAQTDQGATHQPLSPK
PAESNASPKKAQPAASPSQNGPNSPKVNSALVEDHVGKQNGTLSNDDNND
SDIDAMFGHMVRRKAQVKAEQRNRKKAENPNGEKPVSAGDKRKSQKRKGP
TRYTEEGFRIMSYDDIKADQPAGLNGDCPFDCSCCF*

mRNA from alignment at tig00000075_pilon:361243..362553+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9197.t1 ID=Ggra9197.t1|Name=Ggra9197.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1311bp|location=Sequence derived from alignment at tig00000075_pilon:361243..362553+ (Gracilaria gracilis GNS1m male)
ATGTCCAAAACACGGCAGCAAATCTCGAAGAGGAAGCGACGACTTCGTCG
TATACAACGTCGACGTTTGCAAAAGGTGCGTCGACAACAGCATGCACAGC
TCGTGGCCGCCGGAGCTGCGCGACAGGCCAGGCAAAAGGCGGTACAGAAT
TGGCTTCAAGAAGAGAAACGGCGCGAGAAACGCACTTCAAATCGTCTAGA
ATCTCCCAACAAACCGCGCGTACGATTCGCTGATAATGTCTACGTCACTG
AGATTCCGAACGTGCCGGCGCATAGTTTACCGAAGCCGGTGTCGTCGCCG
ACGGGTGTTCGACTCGTGAGAGAAAGAGAGGAGCAGCAAGCCCGCGACAT
TGCCAAGCTGGGTCTGCATGATGCCATGCCCTTCTCGCTTCTTTGTGCGC
CGgacgatgattacgatgaagatgatgatCCGGATTTTGTGCCCGATGTG
CTGGCGGAGCACATTAACATTCAGCTCCCTGTCCTTACCAGACCAAAACG
CCGTCTCATTCCTCACTCCGTTCCAGTTTCAAATTCTTCAGATTCTGAAC
CGTCCAAGCGCCACAAGAAGGCTTTTCCAAATGCTTCTCCAGCTTCCACG
CCGCCGAAACCATCACAGCGTCAAAACAAATCACCCAAGCAATCAACAGA
GCACTCTAACAATGCCTCATCAACCAAAGCCAATGCCGTTGGCCAGTCTT
CAGAGAGAAAACGAACCCTTTCTCAAATGCTGAGCACTCAAGATGCTACA
TCCGCAGACACTTCGCAAGATGCGGTGGACCGACCACCCTCTTCTGTAAA
AGCTTCAGACTCTCCAAGACGCCGCAAGAAGAAGAGGCGAAAGCTTTCAA
ATGTCGCTCAAACCGACCAAGGCGCCACGCACCAACCGCTGTCACCTAAG
CCCGCTGAGAGTAATGCTTCCCCGAAGAAGGCCCAACCAGCTGCAAGCCC
TTCCCAAAACGGTCCAAATTCGCCAAAAGTGAACTCCGCTCTTGTCGAGG
ATCATGTCGGGAAACAGAATGGTACTTTGTCGAACGACGATAATAATGAC
TCGGACATTGACGCCATGTTCGGCCACATGGTGCGGCGCAAAGCACAAGT
CAAGGCTGAGCAACGCAACCGAAAAAAGGCGGAAAACCCTAACGGCGAAA
AGCCTGTCAGTGCCGGCGATAAGCGAAAGTCACAGAAGAGGAAAGGCCCG
ACAAGATACACAGAAGAAGGGTTCCGTATCATGAGCTACGATGATATCAA
AGCTGATCAGCCAGCGGGCTTAAACGGTGATTGTCCATTTGATTGTTCTT
GTTGTTTTTGA

Coding sequence (CDS) from alignment at tig00000075_pilon:361243..362553+

>Ggra9197.t1 ID=Ggra9197.t1|Name=Ggra9197.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1311bp|location=Sequence derived from alignment at tig00000075_pilon:361243..362553+ (Gracilaria gracilis GNS1m male)
ATGTCCAAAACACGGCAGCAAATCTCGAAGAGGAAGCGACGACTTCGTCG
TATACAACGTCGACGTTTGCAAAAGGTGCGTCGACAACAGCATGCACAGC
TCGTGGCCGCCGGAGCTGCGCGACAGGCCAGGCAAAAGGCGGTACAGAAT
TGGCTTCAAGAAGAGAAACGGCGCGAGAAACGCACTTCAAATCGTCTAGA
ATCTCCCAACAAACCGCGCGTACGATTCGCTGATAATGTCTACGTCACTG
AGATTCCGAACGTGCCGGCGCATAGTTTACCGAAGCCGGTGTCGTCGCCG
ACGGGTGTTCGACTCGTGAGAGAAAGAGAGGAGCAGCAAGCCCGCGACAT
TGCCAAGCTGGGTCTGCATGATGCCATGCCCTTCTCGCTTCTTTGTGCGC
CGgacgatgattacgatgaagatgatgatCCGGATTTTGTGCCCGATGTG
CTGGCGGAGCACATTAACATTCAGCTCCCTGTCCTTACCAGACCAAAACG
CCGTCTCATTCCTCACTCCGTTCCAGTTTCAAATTCTTCAGATTCTGAAC
CGTCCAAGCGCCACAAGAAGGCTTTTCCAAATGCTTCTCCAGCTTCCACG
CCGCCGAAACCATCACAGCGTCAAAACAAATCACCCAAGCAATCAACAGA
GCACTCTAACAATGCCTCATCAACCAAAGCCAATGCCGTTGGCCAGTCTT
CAGAGAGAAAACGAACCCTTTCTCAAATGCTGAGCACTCAAGATGCTACA
TCCGCAGACACTTCGCAAGATGCGGTGGACCGACCACCCTCTTCTGTAAA
AGCTTCAGACTCTCCAAGACGCCGCAAGAAGAAGAGGCGAAAGCTTTCAA
ATGTCGCTCAAACCGACCAAGGCGCCACGCACCAACCGCTGTCACCTAAG
CCCGCTGAGAGTAATGCTTCCCCGAAGAAGGCCCAACCAGCTGCAAGCCC
TTCCCAAAACGGTCCAAATTCGCCAAAAGTGAACTCCGCTCTTGTCGAGG
ATCATGTCGGGAAACAGAATGGTACTTTGTCGAACGACGATAATAATGAC
TCGGACATTGACGCCATGTTCGGCCACATGGTGCGGCGCAAAGCACAAGT
CAAGGCTGAGCAACGCAACCGAAAAAAGGCGGAAAACCCTAACGGCGAAA
AGCCTGTCAGTGCCGGCGATAAGCGAAAGTCACAGAAGAGGAAAGGCCCG
ACAAGATACACAGAAGAAGGGTTCCGTATCATGAGCTACGATGATATCAA
AGCTGATCAGCCAGCGGGCTTAAACGGTGATTGTCCATTTGATTGTTCTT
GTTGTTTTTGA