Ggra9226.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9226.t1
Unique NameGgra9226.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length252
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:424498..425253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703510.1
Preferred namePSMA6
PFAMsProteasome,Proteasome_A_N
Max annot lvl2759|Eukaryota
KEGG koko:K02730
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
GOsGO:0000502,GO:0000932,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0003824,GO:0004175,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005829,GO:0005839,GO:0005840,GO:0005844,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007275,GO:0007346,GO:0007517,GO:0007519,GO:0008134,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009888,GO:0009889,GO:0009896,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0010468,GO:0010498,GO:0010499,GO:0010556,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0014706,GO:0016020,GO:0016363,GO:0016579,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019773,GO:0019941,GO:0022626,GO:0030016,GO:0030017,GO:0030071,GO:0030163,GO:0031090,GO:0031323,GO:0031326,GO:0031331,GO:0031347,GO:0031597,GO:0031974,GO:0031981,GO:0032101,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034399,GO:0034515,GO:0035639,GO:0035770,GO:0036211,GO:0036464,GO:0042175,GO:0042221,GO:0042788,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043412,GO:0043632,GO:0043687,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048731,GO:0048856,GO:0050727,GO:0050789,GO:0050794,GO:0050896,GO:0051059,GO:0051090,GO:0051091,GO:0051092,GO:0051128,GO:0051130,GO:0051171,GO:0051247,GO:0051252,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060255,GO:0060537,GO:0060538,GO:0061061,GO:0062033,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0080134,GO:0090068,GO:0097159,GO:0098588,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1903506,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990904,GO:2000112,GO:2001141,GO:2001252
Evalue6.93e-123
EggNOG OGsCOG0638@1|root,KOG0182@2759|Eukaryota
EC3.4.25.1
Descriptionthreonine-type endopeptidase activity
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9226Ggra9226Gracilaria gracilis GNS1m malegenetig00000075_pilon 424498..425253 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9226.t1.start1Ggra9226.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 424498..424500 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9226.t1.CDS1Ggra9226.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 424498..425253 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9226.t1.exon1Ggra9226.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 424498..425253 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9226.t1.stop1Ggra9226.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 425251..425253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9226.t1Ggra9226.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 424498..425253 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9226.t1 ID=Ggra9226.t1|Name=Ggra9226.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=252bp
MSRGSSAGYDRHITIFSPEGRLFQVEYAFKAVKAPGITSIAVRGKDSVCA
VTQKKVPDKLIDPTSVTSAFQLSENHGCIATGVITDAKAMIQRTRSEAAD
FKFDYAYEIPVEYLARRVADENQVYTQHAYMRPLGVSMIIMGLDEEEGPS
LFKCDPAGHYVGYRACAAGAKEQEALNFLQNKFKTKEGETPVELSEDDTI
QTAIAALQNVLSADFKPEEIEVALVSERKPKFHLLTAREVEDHLTALAER
D*
back to top

spliced messenger RNA

>Ggra9226.t1 ID=Ggra9226.t1|Name=Ggra9226.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00000075_pilon:424498..425253+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCGCGGAAGCAGTGCTGGCTACGATCGCCATATTACTATTTTCTC
TCCGGAAGGGAGATTGTTTCAGGTCGAATATGCTTTCAAGGCGGTAAAAG
CCCCCGGTATAACATCCATTGCCGTCCGAGGCAAGGATTCGGTATGCGCC
GTAACACAGAAGAAGGTACCTGACAAACTCATCGATCCAACGTCAGTTAC
TTCAGCTTTCCAGCTCTCAGAAAACCATGGCTGCATTGCAACTGGCGTAA
TCACGGACGCAAAAGCGATGATACAGAGAACGCGCTCCGAAGCAGCCGAT
TTCAAATTTGACTACGCCTACGAAATCCCTGTGGAGTACCTCGCTCGCCG
CGTTGCCGATGAAAATCAGGTATATACTCAGCATGCATACATGCGCCCTC
TTGGGGTGTCTATGATCATTATGGGTTTGGATGAAGAAGAAGGACCATCG
CTATTCAAGTGCGATCCTGCCGGTCACTATGTTGGATACAGAGCTTGTGC
TGCAGGTGCTAAAGAACAAGAGGCACTGAACTTTCTTCAGAACAAGTTTA
AAACTAAGGAGGGTGAAACACCGGTTGAGTTGTCGGAGGATGACACTATT
CAAACAGCGATCGCAGCTTTGCAAAATGTTCTGTCGGCTGATTTCAAACC
AGAGGAAATTGAAGTTGCTCTCGTTTCCGAAAGAAAACCGAAGTTTCATT
TGCTAACCGCCAGAGAGGTCGAGGACCACCTCACCGCTTTGGCAGAAAGA
GATTGA
back to top

protein sequence of Ggra9226.t1

>Ggra9226.t1 ID=Ggra9226.t1|Name=Ggra9226.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=252bp
MSRGSSAGYDRHITIFSPEGRLFQVEYAFKAVKAPGITSIAVRGKDSVCA
VTQKKVPDKLIDPTSVTSAFQLSENHGCIATGVITDAKAMIQRTRSEAAD
FKFDYAYEIPVEYLARRVADENQVYTQHAYMRPLGVSMIIMGLDEEEGPS
LFKCDPAGHYVGYRACAAGAKEQEALNFLQNKFKTKEGETPVELSEDDTI
QTAIAALQNVLSADFKPEEIEVALVSERKPKFHLLTAREVEDHLTALAER
D*
back to top

mRNA from alignment at tig00000075_pilon:424498..425253+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9226.t1 ID=Ggra9226.t1|Name=Ggra9226.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00000075_pilon:424498..425253+ (Gracilaria gracilis GNS1m male)
ATGAGCCGCGGAAGCAGTGCTGGCTACGATCGCCATATTACTATTTTCTC
TCCGGAAGGGAGATTGTTTCAGGTCGAATATGCTTTCAAGGCGGTAAAAG
CCCCCGGTATAACATCCATTGCCGTCCGAGGCAAGGATTCGGTATGCGCC
GTAACACAGAAGAAGGTACCTGACAAACTCATCGATCCAACGTCAGTTAC
TTCAGCTTTCCAGCTCTCAGAAAACCATGGCTGCATTGCAACTGGCGTAA
TCACGGACGCAAAAGCGATGATACAGAGAACGCGCTCCGAAGCAGCCGAT
TTCAAATTTGACTACGCCTACGAAATCCCTGTGGAGTACCTCGCTCGCCG
CGTTGCCGATGAAAATCAGGTATATACTCAGCATGCATACATGCGCCCTC
TTGGGGTGTCTATGATCATTATGGGTTTGGATGAAGAAGAAGGACCATCG
CTATTCAAGTGCGATCCTGCCGGTCACTATGTTGGATACAGAGCTTGTGC
TGCAGGTGCTAAAGAACAAGAGGCACTGAACTTTCTTCAGAACAAGTTTA
AAACTAAGGAGGGTGAAACACCGGTTGAGTTGTCGGAGGATGACACTATT
CAAACAGCGATCGCAGCTTTGCAAAATGTTCTGTCGGCTGATTTCAAACC
AGAGGAAATTGAAGTTGCTCTCGTTTCCGAAAGAAAACCGAAGTTTCATT
TGCTAACCGCCAGAGAGGTCGAGGACCACCTCACCGCTTTGGCAGAAAGA
GATTGA
back to top

Coding sequence (CDS) from alignment at tig00000075_pilon:424498..425253+

>Ggra9226.t1 ID=Ggra9226.t1|Name=Ggra9226.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=756bp|location=Sequence derived from alignment at tig00000075_pilon:424498..425253+ (Gracilaria gracilis GNS1m male)
ATGAGCCGCGGAAGCAGTGCTGGCTACGATCGCCATATTACTATTTTCTC
TCCGGAAGGGAGATTGTTTCAGGTCGAATATGCTTTCAAGGCGGTAAAAG
CCCCCGGTATAACATCCATTGCCGTCCGAGGCAAGGATTCGGTATGCGCC
GTAACACAGAAGAAGGTACCTGACAAACTCATCGATCCAACGTCAGTTAC
TTCAGCTTTCCAGCTCTCAGAAAACCATGGCTGCATTGCAACTGGCGTAA
TCACGGACGCAAAAGCGATGATACAGAGAACGCGCTCCGAAGCAGCCGAT
TTCAAATTTGACTACGCCTACGAAATCCCTGTGGAGTACCTCGCTCGCCG
CGTTGCCGATGAAAATCAGGTATATACTCAGCATGCATACATGCGCCCTC
TTGGGGTGTCTATGATCATTATGGGTTTGGATGAAGAAGAAGGACCATCG
CTATTCAAGTGCGATCCTGCCGGTCACTATGTTGGATACAGAGCTTGTGC
TGCAGGTGCTAAAGAACAAGAGGCACTGAACTTTCTTCAGAACAAGTTTA
AAACTAAGGAGGGTGAAACACCGGTTGAGTTGTCGGAGGATGACACTATT
CAAACAGCGATCGCAGCTTTGCAAAATGTTCTGTCGGCTGATTTCAAACC
AGAGGAAATTGAAGTTGCTCTCGTTTCCGAAAGAAAACCGAAGTTTCATT
TGCTAACCGCCAGAGAGGTCGAGGACCACCTCACCGCTTTGGCAGAAAGA
GATTGA
back to top