Ggra9248.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9248.t1
Unique NameGgra9248.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length92
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:578363..578724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog161934.XP_010669581.1
Max annot lvl35493|Streptophyta
Evalue1.85e-13
EggNOG OGs2CIQS@1|root,2S3S1@2759|Eukaryota,37W19@33090|Viridiplantae,3GK8P@35493|Streptophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9248Ggra9248Gracilaria gracilis GNS1m malegenetig00000075_pilon 578363..578724 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9248.t1Ggra9248.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 578363..578724 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9248.t1.start1Ggra9248.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 578363..578365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9248.t1.CDS1Ggra9248.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 578363..578530 +
Ggra9248.t1.CDS2Ggra9248.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 578617..578724 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9248.t1.exon1Ggra9248.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 578363..578530 +
Ggra9248.t1.exon2Ggra9248.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 578617..578724 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9248.t1.intron1Ggra9248.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 578531..578616 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9248.t1.stop1Ggra9248.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 578722..578724 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9248.t1 ID=Ggra9248.t1|Name=Ggra9248.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=92bp
MAGGMGVRKNVHIEEWAGFRENCEHVFKFSRANWARLAVYGIAVPIGLYV
WITKEMLCEGHSEGRGPERYGYQRKYLGFPPQKRAEDSSES*
back to top

spliced messenger RNA

>Ggra9248.t1 ID=Ggra9248.t1|Name=Ggra9248.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=276bp|location=Sequence derived from alignment at tig00000075_pilon:578363..578724+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGGTGGAATGGGCGTCCGAAAGAACGTGCACATCGAAGAATGGGC
AGGCTTCCGCGAAAACTGCGAGCATGTCTTCAAGTTCTCTCGTGCCAATT
GGGCACGACTCGCCGTATACGGAATTGCCGTCCCGATAGGACTTTACGTC
TGGATCACGAAGGAAATGCTATGCGAGGGTCATTCAGAAGGACGTGGCCC
TGAACGCTATGGTTATCAGCGTAAATATCTTGGTTTCCCCCCGCAGAAGA
GAGCAGAAGATTCCTCGGAATCATAA
back to top

protein sequence of Ggra9248.t1

>Ggra9248.t1 ID=Ggra9248.t1|Name=Ggra9248.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=92bp
MAGGMGVRKNVHIEEWAGFRENCEHVFKFSRANWARLAVYGIAVPIGLYV
WITKEMLCEGHSEGRGPERYGYQRKYLGFPPQKRAEDSSES*
back to top

mRNA from alignment at tig00000075_pilon:578363..578724+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9248.t1 ID=Ggra9248.t1|Name=Ggra9248.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=362bp|location=Sequence derived from alignment at tig00000075_pilon:578363..578724+ (Gracilaria gracilis GNS1m male)
ATGGCGGGTGGAATGGGCGTCCGAAAGAACGTGCACATCGAAGAATGGGC
AGGCTTCCGCGAAAACTGCGAGCATGTCTTCAAGTTCTCTCGTGCCAATT
GGGCACGACTCGCCGTATACGGAATTGCCGTCCCGATAGGACTTTACGTC
TGGATCACGAAGGAAATGGTAAGCCACATCTGCCGTCTACTCATGCACAT
AATCGGCTTCTGACACAAGCTTCCACTATCTTATATTCTTATACCGACCC
GAAGCTATGCGAGGGTCATTCAGAAGGACGTGGCCCTGAACGCTATGGTT
ATCAGCGTAAATATCTTGGTTTCCCCCCGCAGAAGAGAGCAGAAGATTCC
TCGGAATCATAA
back to top

Coding sequence (CDS) from alignment at tig00000075_pilon:578363..578724+

>Ggra9248.t1 ID=Ggra9248.t1|Name=Ggra9248.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=276bp|location=Sequence derived from alignment at tig00000075_pilon:578363..578724+ (Gracilaria gracilis GNS1m male)
ATGGCGGGTGGAATGGGCGTCCGAAAGAACGTGCACATCGAAGAATGGGC
AGGCTTCCGCGAAAACTGCGAGCATGTCTTCAAGTTCTCTCGTGCCAATT
GGGCACGACTCGCCGTATACGGAATTGCCGTCCCGATAGGACTTTACGTC
TGGATCACGAAGGAAATGCTATGCGAGGGTCATTCAGAAGGACGTGGCCC
TGAACGCTATGGTTATCAGCGTAAATATCTTGGTTTCCCCCCGCAGAAGA
GAGCAGAAGATTCCTCGGAATCATAA
back to top