Ggra9136.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9136.t1
Unique NameGgra9136.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length174
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:79429..79950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog556261.HMPREF0240_04487
PFAMsrhaM
Max annot lvl186801|Clostridia
Evalue1.77e-13
EggNOG OGsCOG3254@1|root,COG3254@2|Bacteria,1V1XT@1239|Firmicutes,24NE4@186801|Clostridia
DescriptionL-rhamnose mutarotase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9136Ggra9136Gracilaria gracilis GNS1m malegenetig00000075_pilon 79429..79950 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9136.t1.start1Ggra9136.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 79429..79431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9136.t1.CDS1Ggra9136.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 79429..79950 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9136.t1.exon1Ggra9136.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 79429..79950 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9136.t1.stop1Ggra9136.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 79948..79950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9136.t1Ggra9136.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 79429..79950 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9136.t1 ID=Ggra9136.t1|Name=Ggra9136.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=174bp
MRRTLVAGNAGHVDRKRHRGDAKEEERRYTNRRSFHAFDAQVLACGARAG
QPVSKMSSEQTKAQEPMRIAMTLNIKPDVVQEYIDHHAHSRPEVREALRS
VGIRNLSLWNWGNRLFYYAEYVGTEPFDEAMDKYSKMEGVKDWEDLMHNY
QEKIPGSEGDVWWQQCQLVYYQA*
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spliced messenger RNA

>Ggra9136.t1 ID=Ggra9136.t1|Name=Ggra9136.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=522bp|location=Sequence derived from alignment at tig00000075_pilon:79429..79950+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCGCACTCTCGTCGCCGGGAACGCTGGACACGTGGACAGAAAGCG
CCACAGAGGAGATGCGAAGGAAGAGGAGCGACGCTACACAAACAGGAGAT
CGTTTCATGCTTTTGATGCTCAGGTGTTGGCTTGTGGTGCGAGAGCAGGA
CAACCCGTTTCAAAAATGAGCAGCGAACAGACGAAAGCGCAGGAGCCGAT
GCGAATCGCTATGACGCTCAACATCAAGCCAGATGTGGTACAAGAATACA
TAGACCACCATGCGCACAGTCGTCCTGAAGTACGCGAAGCGCTACGAAGT
GTGGGTATCCGAAACCTAAGTTTATGGAACTGGGGAAACCGTCTGTTCTA
TTACGCGGAATACGTAGGCACCGAGCCATTCGACGAAGCAATGGACAAGT
ACTCCAAGATGGAGGGGGTGAAGGATTGGGAAGACCTGATGCACAACTAC
CAGGAAAAGATCCCCGGTAGTGAGGGAGACGTATGGTGGCAACAATGTCA
ACTGGTTTACTACCAAGCGTAG
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protein sequence of Ggra9136.t1

>Ggra9136.t1 ID=Ggra9136.t1|Name=Ggra9136.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=174bp
MRRTLVAGNAGHVDRKRHRGDAKEEERRYTNRRSFHAFDAQVLACGARAG
QPVSKMSSEQTKAQEPMRIAMTLNIKPDVVQEYIDHHAHSRPEVREALRS
VGIRNLSLWNWGNRLFYYAEYVGTEPFDEAMDKYSKMEGVKDWEDLMHNY
QEKIPGSEGDVWWQQCQLVYYQA*
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mRNA from alignment at tig00000075_pilon:79429..79950+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9136.t1 ID=Ggra9136.t1|Name=Ggra9136.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=522bp|location=Sequence derived from alignment at tig00000075_pilon:79429..79950+ (Gracilaria gracilis GNS1m male)
ATGCGCCGCACTCTCGTCGCCGGGAACGCTGGACACGTGGACAGAAAGCG
CCACAGAGGAGATGCGAAGGAAGAGGAGCGACGCTACACAAACAGGAGAT
CGTTTCATGCTTTTGATGCTCAGGTGTTGGCTTGTGGTGCGAGAGCAGGA
CAACCCGTTTCAAAAATGAGCAGCGAACAGACGAAAGCGCAGGAGCCGAT
GCGAATCGCTATGACGCTCAACATCAAGCCAGATGTGGTACAAGAATACA
TAGACCACCATGCGCACAGTCGTCCTGAAGTACGCGAAGCGCTACGAAGT
GTGGGTATCCGAAACCTAAGTTTATGGAACTGGGGAAACCGTCTGTTCTA
TTACGCGGAATACGTAGGCACCGAGCCATTCGACGAAGCAATGGACAAGT
ACTCCAAGATGGAGGGGGTGAAGGATTGGGAAGACCTGATGCACAACTAC
CAGGAAAAGATCCCCGGTAGTGAGGGAGACGTATGGTGGCAACAATGTCA
ACTGGTTTACTACCAAGCGTAG
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Coding sequence (CDS) from alignment at tig00000075_pilon:79429..79950+

>Ggra9136.t1 ID=Ggra9136.t1|Name=Ggra9136.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=522bp|location=Sequence derived from alignment at tig00000075_pilon:79429..79950+ (Gracilaria gracilis GNS1m male)
ATGCGCCGCACTCTCGTCGCCGGGAACGCTGGACACGTGGACAGAAAGCG
CCACAGAGGAGATGCGAAGGAAGAGGAGCGACGCTACACAAACAGGAGAT
CGTTTCATGCTTTTGATGCTCAGGTGTTGGCTTGTGGTGCGAGAGCAGGA
CAACCCGTTTCAAAAATGAGCAGCGAACAGACGAAAGCGCAGGAGCCGAT
GCGAATCGCTATGACGCTCAACATCAAGCCAGATGTGGTACAAGAATACA
TAGACCACCATGCGCACAGTCGTCCTGAAGTACGCGAAGCGCTACGAAGT
GTGGGTATCCGAAACCTAAGTTTATGGAACTGGGGAAACCGTCTGTTCTA
TTACGCGGAATACGTAGGCACCGAGCCATTCGACGAAGCAATGGACAAGT
ACTCCAAGATGGAGGGGGTGAAGGATTGGGAAGACCTGATGCACAACTAC
CAGGAAAAGATCCCCGGTAGTGAGGGAGACGTATGGTGGCAACAATGTCA
ACTGGTTTACTACCAAGCGTAG
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