Ggra9260.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9260.t1
Unique NameGgra9260.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length148
Homology
BLAST of Ggra9260.t1 vs. uniprot
Match: R7Q8R5 (Ribosomal_S13_N domain-containing protein n=2 Tax=Rhodymeniophycidae TaxID=2045261 RepID=R7Q8R5_CHOCR)

HSP 1 Score: 268 bits (685), Expect = 1.510e-90
Identity = 132/147 (89.80%), Postives = 140/147 (95.24%), Query Frame = 0
Query:    1 MGRMHSKGKGISKSALPYKRNPPSWLKATPEEVTDQICKLAKKGFVPSQIGVYLRDSQGITQVHAVTGSKILRILKAKGLAPEIPEDLYMLIKKAASVRKHLDRNRKDKDAKFRLILIESRIHRLARYYKTSKRIPANWKYGQNVIN 147
            MGRMHSKGKGISKS+LPYKRNPP+WLK + +EVTDQICKLAKKG VPSQIGVYLRDSQGITQV AVTG+KILRILKAKGLAPE+PEDLYMLIKKA SVRKHLDRNRKDKDAKFRLILIESRIHRLARYYK +KRIPANWKYGQ V+N
Sbjct:    1 MGRMHSKGKGISKSSLPYKRNPPTWLKTSADEVTDQICKLAKKGLVPSQIGVYLRDSQGITQVRAVTGNKILRILKAKGLAPELPEDLYMLIKKAVSVRKHLDRNRKDKDAKFRLILIESRIHRLARYYKKTKRIPANWKYGQTVVN 147          
BLAST of Ggra9260.t1 vs. uniprot
Match: A0A1X6PEX0 (Ribosomal_S13_N domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PEX0_PORUM)

HSP 1 Score: 239 bits (609), Expect = 5.640e-79
Identity = 119/146 (81.51%), Postives = 136/146 (93.15%), Query Frame = 0
Query:    1 MGRMHSKGKGISKSALPYKRNPPSWLKATPEEVTDQICKLAKKGFVPSQIGVYLRDSQGITQVHAVTGSKILRILKAKGLAPEIPEDLYMLIKKAASVRKHLDRNRKDKDAKFRLILIESRIHRLARYYKTSKRIPANWKYGQNVI 146
            MGRMHSKGKGIS SALPY+RN PSWLK T ++V +QICKLAKKG VPSQIGV+LRDSQG++QV AVTG+KILRILKA GLAPE+PEDLYMLIKKA SVRKHL+RNRKDKD+KFRLILIESRIHRLARYYKT+K++PAN+KY Q+V+
Sbjct:    1 MGRMHSKGKGISSSALPYRRNAPSWLKTTSDDVCEQICKLAKKGLVPSQIGVHLRDSQGVSQVKAVTGNKILRILKANGLAPELPEDLYMLIKKALSVRKHLERNRKDKDSKFRLILIESRIHRLARYYKTTKQVPANFKY-QSVV 145          
BLAST of Ggra9260.t1 vs. uniprot
Match: A0A6T6LE89 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A6T6LE89_9RHOD)

HSP 1 Score: 239 bits (609), Expect = 5.830e-79
Identity = 113/146 (77.40%), Postives = 132/146 (90.41%), Query Frame = 0
Query:    1 MGRMHSKGKGISKSALPYKRNPPSWLKATPEEVTDQICKLAKKGFVPSQIGVYLRDSQGITQVHAVTGSKILRILKAKGLAPEIPEDLYMLIKKAASVRKHLDRNRKDKDAKFRLILIESRIHRLARYYKTSKRIPANWKYGQNVI 146
            MGR+HSKGKGIS SALPYKR+PP+WLK TP+EVTDQIC+LAKKG VPSQIGVYLRD+QG+ QV +VT +KILRILKA GLAPE+PEDLY LIKKA +VRKHL+RNRKDKD+KFRLILIESR+HRLARYYK +K++P  WKYG  ++
Sbjct:    1 MGRLHSKGKGISSSALPYKRSPPAWLKITPQEVTDQICQLAKKGVVPSQIGVYLRDTQGVAQVRSVTNNKILRILKANGLAPELPEDLYFLIKKAMAVRKHLERNRKDKDSKFRLILIESRVHRLARYYKRTKQLPPTWKYGTAIV 146          
BLAST of Ggra9260.t1 vs. uniprot
Match: G2Q456 (Ribosomal_S13_N domain-containing protein n=113 Tax=leotiomyceta TaxID=716546 RepID=G2Q456_MYCTT)

HSP 1 Score: 229 bits (583), Expect = 6.110e-75
Identity = 113/147 (76.87%), Postives = 125/147 (85.03%), Query Frame = 0
Query:    1 MGRMHSKGKGISKSALPYKRNPPSWLKATPEEVTDQICKLAKKGFVPSQIGVYLRDSQGITQVHAVTGSKILRILKAKGLAPEIPEDLYMLIKKAASVRKHLDRNRKDKDAKFRLILIESRIHRLARYYKTSKRIPANWKYGQNVIN 147
            MGR+HSKGKGIS SA+PY RNPPSWLK TPE+V DQICKLAKKG  PSQIGV LRDS GI QV  VTG+KILRILK+ GLAP+IPEDLYMLIKKA +VRKHL+RNRKDKD+KFRLILIESRIHRLARYYKT   +P  WKY  +  +
Sbjct:    1 MGRLHSKGKGISGSAIPYSRNPPSWLKTTPEQVVDQICKLAKKGATPSQIGVILRDSHGIAQVKVVTGNKILRILKSNGLAPDIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYKTVGVLPPTWKYESSTAS 147          
BLAST of Ggra9260.t1 vs. uniprot
Match: M2WTC0 (40S ribosomal protein S13e n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WTC0_GALSU)

HSP 1 Score: 228 bits (582), Expect = 8.670e-75
Identity = 108/141 (76.60%), Postives = 126/141 (89.36%), Query Frame = 0
Query:    1 MGRMHSKGKGISKSALPYKRNPPSWLKATPEEVTDQICKLAKKGFVPSQIGVYLRDSQGITQVHAVTGSKILRILKAKGLAPEIPEDLYMLIKKAASVRKHLDRNRKDKDAKFRLILIESRIHRLARYYKTSKRIPANWKY 141
            MGRMHSKGKGI++S +PY+RNPPSW+K TP EV D ICKLA+KG VPSQIGV+LRDSQG+  V  +TG+KI+RILKA GLAPEIPEDLY LIKKA +VRKHL+RNRKDKD+KFRLILIESRIHRL+RYYK +K++P NWKY
Sbjct:    1 MGRMHSKGKGIAQSVIPYRRNPPSWVKTTPNEVVDMICKLARKGLVPSQIGVHLRDSQGVPLVKQITGNKIVRILKANGLAPEIPEDLYFLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLSRYYKRTKQLPPNWKY 141          
BLAST of Ggra9260.t1 vs. uniprot
Match: A0A2R6X0T8 (Ribosomal_S13_N domain-containing protein n=4 Tax=Streptophyta TaxID=35493 RepID=A0A2R6X0T8_MARPO)

HSP 1 Score: 228 bits (580), Expect = 1.750e-74
Identity = 111/141 (78.72%), Postives = 124/141 (87.94%), Query Frame = 0
Query:    1 MGRMHSKGKGISKSALPYKRNPPSWLKATPEEVTDQICKLAKKGFVPSQIGVYLRDSQGITQVHAVTGSKILRILKAKGLAPEIPEDLYMLIKKAASVRKHLDRNRKDKDAKFRLILIESRIHRLARYYKTSKRIPANWKY 141
            MGRMHS+GKG+S SALPYKRNPPSWLK T +EV D ICKLAKKG  PSQIGV LRDS GI+QV +V+GSKILRILK  GL PEIPEDLY LIKKA +VRKHL+RNRKDKD+KFRLILIESR+HRLARYYK +K++P NWKY
Sbjct:    1 MGRMHSRGKGMSSSALPYKRNPPSWLKITTQEVDDHICKLAKKGLTPSQIGVILRDSHGISQVKSVSGSKILRILKGHGLGPEIPEDLYHLIKKAVAVRKHLERNRKDKDSKFRLILIESRVHRLARYYKRTKKLPPNWKY 141          
BLAST of Ggra9260.t1 vs. uniprot
Match: A0A7S0R2R9 (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0R2R9_9CHLO)

HSP 1 Score: 228 bits (580), Expect = 1.750e-74
Identity = 112/141 (79.43%), Postives = 123/141 (87.23%), Query Frame = 0
Query:    1 MGRMHSKGKGISKSALPYKRNPPSWLKATPEEVTDQICKLAKKGFVPSQIGVYLRDSQGITQVHAVTGSKILRILKAKGLAPEIPEDLYMLIKKAASVRKHLDRNRKDKDAKFRLILIESRIHRLARYYKTSKRIPANWKY 141
            MGRMHSKGKG+S SALPYKR+ PSWLK TP EV +Q CKLAKKG  PSQIGV LRD  GITQV +VTGSK+LRILK KGLAP IPEDLY LIKKA SVRKHLDRNRKD+D+KFRLIL+ESRIHRLARYYKT +++P NWKY
Sbjct:    1 MGRMHSKGKGMSSSALPYKRSAPSWLKITPTEVEEQCCKLAKKGLTPSQIGVILRDYHGITQVSSVTGSKVLRILKGKGLAPTIPEDLYHLIKKAVSVRKHLDRNRKDRDSKFRLILVESRIHRLARYYKTVRKLPPNWKY 141          
BLAST of Ggra9260.t1 vs. uniprot
Match: A0A6H5KEX7 (Ribosomal_S13_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KEX7_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 4.210e-74
Identity = 110/141 (78.01%), Postives = 127/141 (90.07%), Query Frame = 0
Query:    1 MGRMHSKGKGISKSALPYKRNPPSWLKATPEEVTDQICKLAKKGFVPSQIGVYLRDSQGITQVHAVTGSKILRILKAKGLAPEIPEDLYMLIKKAASVRKHLDRNRKDKDAKFRLILIESRIHRLARYYKTSKRIPANWKY 141
            MGRMHS GKGISKS+LPYKR+PPSWLK + +EVT+ +CKLAKKG  PSQIGV LRDS GI QV A+TGSKILR+LKA GLA EIPEDLYMLIKKA +VRKHL+RNR+DKD+KFRLILIESRIHRLARYY+T++++ ANWKY
Sbjct:   38 MGRMHSGGKGISKSSLPYKRSPPSWLKISAQEVTEHVCKLAKKGLTPSQIGVILRDSNGIAQVRAITGSKILRVLKANGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKY 178          
BLAST of Ggra9260.t1 vs. uniprot
Match: A0A6U5KTU7 (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5KTU7_9STRA)

HSP 1 Score: 226 bits (577), Expect = 5.010e-74
Identity = 109/142 (76.76%), Postives = 125/142 (88.03%), Query Frame = 0
Query:    1 MGRMHSKGKGISKSALPYKRNPPSWLKATPEEVTDQICKLAKKGFVPSQIGVYLRDSQGITQVHAVTGSKILRILKAKGLAPEIPEDLYMLIKKAASVRKHLDRNRKDKDAKFRLILIESRIHRLARYYKTSKRIPANWKYG 142
            MGRMH+ GKGISKSALPYKR+PPSWLK T  +V + ICKLAKKG  PSQIGV LRD  GI QV +VTGSKI+RILK +GLAPEIPEDLYMLIKKA SVRKHL++NRKDKD+KFRLILIESRIHRLARYY+T++++P NW+Y 
Sbjct:    1 MGRMHAPGKGISKSALPYKRSPPSWLKITSSDVEEHICKLAKKGLTPSQIGVVLRDQHGIAQVRSVTGSKIVRILKVQGLAPEIPEDLYMLIKKAVSVRKHLEKNRKDKDSKFRLILIESRIHRLARYYRTTRKLPPNWRYA 142          
BLAST of Ggra9260.t1 vs. uniprot
Match: A0A1Y3NI65 (Ribosomal_S13_N domain-containing protein n=9 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y3NI65_PIRSE)

HSP 1 Score: 226 bits (576), Expect = 7.120e-74
Identity = 111/147 (75.51%), Postives = 126/147 (85.71%), Query Frame = 0
Query:    1 MGRMHSKGKGISKSALPYKRNPPSWLKATPEEVTDQICKLAKKGFVPSQIGVYLRDSQGITQVHAVTGSKILRILKAKGLAPEIPEDLYMLIKKAASVRKHLDRNRKDKDAKFRLILIESRIHRLARYYKTSKRIPANWKYGQNVIN 147
            MGRMH+ GKGI+ SALPYKR PPSWLK + EEV +QICKLAKKG  PSQIGV LRDSQGI QV AVTG+KILRILK+ GLAPE+PEDLY LIKKA +VRKHL+RNRKD +AKFRLILIESRIHRLARYYKT+ ++P NWKY  +  +
Sbjct:    1 MGRMHAPGKGIASSALPYKRTPPSWLKTSSEEVVEQICKLAKKGSTPSQIGVILRDSQGIAQVKAVTGNKILRILKSNGLAPELPEDLYFLIKKAVAVRKHLERNRKDSEAKFRLILIESRIHRLARYYKTAGQLPPNWKYESSTAS 147          
The following BLAST results are available for this feature:
BLAST of Ggra9260.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7Q8R51.510e-9089.80Ribosomal_S13_N domain-containing protein n=2 Tax=... [more]
A0A1X6PEX05.640e-7981.51Ribosomal_S13_N domain-containing protein n=1 Tax=... [more]
A0A6T6LE895.830e-7977.40Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
G2Q4566.110e-7576.87Ribosomal_S13_N domain-containing protein n=113 Ta... [more]
M2WTC08.670e-7576.6040S ribosomal protein S13e n=1 Tax=Galdieria sulph... [more]
A0A2R6X0T81.750e-7478.72Ribosomal_S13_N domain-containing protein n=4 Tax=... [more]
A0A7S0R2R91.750e-7479.43Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A6H5KEX74.210e-7478.01Ribosomal_S13_N domain-containing protein n=2 Tax=... [more]
A0A6U5KTU75.010e-7476.76Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A1Y3NI657.120e-7475.51Ribosomal_S13_N domain-containing protein n=9 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012606Ribosomal protein S13/S15, N-terminalSMARTSM01386Ribosomal_S13_N_2coord: 1..60
e-value: 1.5E-37
score: 140.7
IPR012606Ribosomal protein S13/S15, N-terminalPFAMPF08069Ribosomal_S13_Ncoord: 1..60
e-value: 4.5E-30
score: 103.5
IPR000589Ribosomal protein S15SMARTSM01387Ribosomal_S15_2coord: 70..144
e-value: 5.0E-7
score: 36.6
IPR000589Ribosomal protein S15PFAMPF00312Ribosomal_S15coord: 75..141
e-value: 2.9E-12
score: 46.7
IPR000589Ribosomal protein S15PROSITEPS00362RIBOSOMAL_S15coord: 98..128
IPR000589Ribosomal protein S15CDDcd00353Ribosomal_S15p_S13ecoord: 70..141
e-value: 1.08435E-22
score: 83.3214
NoneNo IPR availableGENE3D4.10.860.130coord: 35..82
e-value: 9.2E-25
score: 88.1
NoneNo IPR availableGENE3D1.10.287.10coord: 83..147
e-value: 3.3E-34
score: 119.0
IPR023029Ribosomal protein S15PPANTHERPTHR11885RIBOSOMAL PROTEIN S15P/S13Ecoord: 1..144
IPR023029Ribosomal protein S15PHAMAPMF_01343_ARibosomal_S15_Acoord: 3..146
score: 28.497383
IPR009068S15/NS1, RNA-bindingSUPERFAMILY47060S15/NS1 RNA-binding domaincoord: 66..143

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:614814..615661 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9260.t1Ggra9260.t1Gracilaria gracilis GNS1m malemRNAtig00000075_pilon 614814..615661 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9260.t1 ID=Ggra9260.t1|Name=Ggra9260.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=148bp
MGRMHSKGKGISKSALPYKRNPPSWLKATPEEVTDQICKLAKKGFVPSQI
GVYLRDSQGITQVHAVTGSKILRILKAKGLAPEIPEDLYMLIKKAASVRK
HLDRNRKDKDAKFRLILIESRIHRLARYYKTSKRIPANWKYGQNVIN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012606Ribosomal_S13/S15_N
IPR000589Ribosomal_S15
IPR023029Ribosomal_S15P
IPR009068S15_NS1_RNA-bd