Ggra9260.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9260.t1
Unique NameGgra9260.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length148
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:614814..615661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog40127.XP_009857049.1
Preferred nameRPS13
PFAMsRibosomal_S13_N,Ribosomal_S15
Max annot lvl4751|Fungi
KEGG koko:K02953
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000462,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070181,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue7.51e-76
EggNOG OGsCOG0184@1|root,KOG0400@2759|Eukaryota,39ZVJ@33154|Opisthokonta,3P1R2@4751|Fungi,3QK3G@4890|Ascomycota,213RB@147550|Sordariomycetes,3U533@5139|Sordariales,3UMH8@5148|Sordariaceae
DescriptionBelongs to the universal ribosomal protein uS15 family
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9260Ggra9260Gracilaria gracilis GNS1m malegenetig00000075_pilon 614814..615661 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9260.t1Ggra9260.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 614814..615661 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9260.t1.stop1Ggra9260.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 614814..614816 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9260.t1.CDS1Ggra9260.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 614814..615234 -
Ggra9260.t1.CDS2Ggra9260.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 615639..615661 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9260.t1.exon1Ggra9260.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 614814..615234 -
Ggra9260.t1.exon2Ggra9260.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 615639..615661 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9260.t1.intron1Ggra9260.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 615235..615638 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9260.t1.start1Ggra9260.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 615659..615661 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9260.t1 ID=Ggra9260.t1|Name=Ggra9260.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=148bp
MGRMHSKGKGISKSALPYKRNPPSWLKATPEEVTDQICKLAKKGFVPSQI
GVYLRDSQGITQVHAVTGSKILRILKAKGLAPEIPEDLYMLIKKAASVRK
HLDRNRKDKDAKFRLILIESRIHRLARYYKTSKRIPANWKYGQNVIN*
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spliced messenger RNA

>Ggra9260.t1 ID=Ggra9260.t1|Name=Ggra9260.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=444bp|location=Sequence derived from alignment at tig00000075_pilon:614814..615661- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCGCATGCACAGCAAAGGAAAGGGTATCTCCAAGTCAGCTCTGCC
CTACAAGAGGAACCCTCCATCATGGTTGAAGGCCACACCAGAGGAAGTCA
CCGACCAAATCTGCAAGCTTGCAAAGAAGGGTTTCGTACCTTCTCAGATT
GGTGTCTATCTTCGTGACTCCCAGGGAATCACTCAAGTACATGCCGTGAC
CGGAAGCAAGATTTTGCGCATCCTCAAGGCAAAAGGTTTGGCGCCGGAAA
TTCCAGAAGATCTTTACATGCTTATCAAGAAGGCCGCTTCTGTTCGCAAG
CATCTTGATCGTAACCGCAAGGATAAGGATGCCAAGTTTAGACTAATTCT
TATTGAGAGTCGTATTCATCGTTTGGCGAGGTATTACAAGACCTCAAAGC
GTATCCCCGCTAACTGGAAATACGGACAGAACGTCATCAACTAG
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protein sequence of Ggra9260.t1

>Ggra9260.t1 ID=Ggra9260.t1|Name=Ggra9260.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=148bp
MGRMHSKGKGISKSALPYKRNPPSWLKATPEEVTDQICKLAKKGFVPSQI
GVYLRDSQGITQVHAVTGSKILRILKAKGLAPEIPEDLYMLIKKAASVRK
HLDRNRKDKDAKFRLILIESRIHRLARYYKTSKRIPANWKYGQNVIN*
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mRNA from alignment at tig00000075_pilon:614814..615661-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9260.t1 ID=Ggra9260.t1|Name=Ggra9260.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=848bp|location=Sequence derived from alignment at tig00000075_pilon:614814..615661- (Gracilaria gracilis GNS1m male)
ATGGGTCGCATGCACAGCAAAGGGTACGTCATTTCACTCTCGCTTCGATC
GGTTCATGCAGCTCGTCATCATCTGCATCGTCATTCGCCGCCTGTGGCTG
TGCGCACTTCGGTTAATGCATCAGTGATCACGCTGCTTCGCGCCATGAAA
TTCTGCCGGCCGTTTGGCGTTCGAAAGCGTACTTTCTGCGCCGAAGTGCA
GGAGCGACGGAGCAAGCCATAGAAGTGCTGATTGCTTTCTCTGCAGGCGA
GCCACGTGCGTTCTTGAATCGCATTCGAAGTATCGTAGCCACTCTAGCGG
CTGCGTTAGTTGCCGGGCGGAACGCTCTCGTCATGACTTCGGCAAAACGT
TTAACTGCCAATTCGTACTGACAAGCCTTTTCGACTACTATCCCCGATGT
GCGCGTGCATTGAAATGAAAATCACAGAAAGGGTATCTCCAAGTCAGCTC
TGCCCTACAAGAGGAACCCTCCATCATGGTTGAAGGCCACACCAGAGGAA
GTCACCGACCAAATCTGCAAGCTTGCAAAGAAGGGTTTCGTACCTTCTCA
GATTGGTGTCTATCTTCGTGACTCCCAGGGAATCACTCAAGTACATGCCG
TGACCGGAAGCAAGATTTTGCGCATCCTCAAGGCAAAAGGTTTGGCGCCG
GAAATTCCAGAAGATCTTTACATGCTTATCAAGAAGGCCGCTTCTGTTCG
CAAGCATCTTGATCGTAACCGCAAGGATAAGGATGCCAAGTTTAGACTAA
TTCTTATTGAGAGTCGTATTCATCGTTTGGCGAGGTATTACAAGACCTCA
AAGCGTATCCCCGCTAACTGGAAATACGGACAGAACGTCATCAACTAG
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Coding sequence (CDS) from alignment at tig00000075_pilon:614814..615661-

>Ggra9260.t1 ID=Ggra9260.t1|Name=Ggra9260.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=444bp|location=Sequence derived from alignment at tig00000075_pilon:614814..615661- (Gracilaria gracilis GNS1m male)
ATGGGTCGCATGCACAGCAAAGGAAAGGGTATCTCCAAGTCAGCTCTGCC
CTACAAGAGGAACCCTCCATCATGGTTGAAGGCCACACCAGAGGAAGTCA
CCGACCAAATCTGCAAGCTTGCAAAGAAGGGTTTCGTACCTTCTCAGATT
GGTGTCTATCTTCGTGACTCCCAGGGAATCACTCAAGTACATGCCGTGAC
CGGAAGCAAGATTTTGCGCATCCTCAAGGCAAAAGGTTTGGCGCCGGAAA
TTCCAGAAGATCTTTACATGCTTATCAAGAAGGCCGCTTCTGTTCGCAAG
CATCTTGATCGTAACCGCAAGGATAAGGATGCCAAGTTTAGACTAATTCT
TATTGAGAGTCGTATTCATCGTTTGGCGAGGTATTACAAGACCTCAAAGC
GTATCCCCGCTAACTGGAAATACGGACAGAACGTCATCAACTAG
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