Ggra9147.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9147.t1
Unique NameGgra9147.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length459
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:93830..95855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog370438.PTH_0010
Preferred namepdxT
PFAMsSNO
Max annot lvl186801|Clostridia
KEGG rclassRC00010,RC01783,RC03043
KEGG koko:K08681
KEGG ReactionR07456
KEGG Pathwayko00750,map00750
Evalue1.66e-43
EggNOG OGsCOG0311@1|root,COG0311@2|Bacteria,1V3I6@1239|Firmicutes,24HRT@186801|Clostridia,261H3@186807|Peptococcaceae
EC4.3.3.6
DescriptionCatalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9147Ggra9147Gracilaria gracilis GNS1m malegenetig00000075_pilon 93830..95855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9147.t1Ggra9147.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 93830..95855 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9147.t1.stop1Ggra9147.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 93830..93832 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9147.t1.CDS1Ggra9147.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 93830..93834 -
Ggra9147.t1.CDS2Ggra9147.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000075_pilon 93918..94499 -
Ggra9147.t1.CDS3Ggra9147.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000075_pilon 94571..95143 -
Ggra9147.t1.CDS4Ggra9147.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000075_pilon 95639..95855 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9147.t1.exon1Ggra9147.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 93830..93834 -
Ggra9147.t1.exon2Ggra9147.t1.exon2Gracilaria gracilis GNS1m maleexontig00000075_pilon 93918..94499 -
Ggra9147.t1.exon3Ggra9147.t1.exon3Gracilaria gracilis GNS1m maleexontig00000075_pilon 94571..95143 -
Ggra9147.t1.exon4Ggra9147.t1.exon4Gracilaria gracilis GNS1m maleexontig00000075_pilon 95639..95855 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9147.t1.intron1Ggra9147.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000075_pilon 93835..93917 -
Ggra9147.t1.intron2Ggra9147.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000075_pilon 94500..94570 -
Ggra9147.t1.intron3Ggra9147.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000075_pilon 95144..95638 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9147.t1.start1Ggra9147.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 95853..95855 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9147.t1 ID=Ggra9147.t1|Name=Ggra9147.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=459bp
MGAHCSCLGSAQHPITRTPKSHVTRNHNFHRVSSRRRAAASAPVANAAED
AAAASAAAQSAADHVAASSLIAAADAPPVAGYAGVALDALVAVSEPIAPS
DLVVDASEPVAASQPLGAAQSTELYERIVSADIPPLPHAAVSRPPPATPA
PSANSDEQQAMAAPQRGHSSVAPPEVSSAVVRTVSSSARSQLVVEGDDKL
QQQSPTTLQEAVQVIGSATLEADDDAERGWVDATAPASVMMQIRHYESLE
REAHVDVTEFIRSPCGFFVATWVSFSSSFAMKPDDKPDFSTLNVGVLELQ
GDFAEHTAMLHACGVRSVSAVKQVNDLKHIDALIIPGGESTVISKLLIDF
KLMQPIRKLVQDGLPIFGTCAGLILLARQIRQFDEQQRIGVLDVVVDRNA
YGSQIDSFESFVSADVYPFQGGAALRAVHIRAPAVVQMGDGVQALAAFRE
RAVLVRQA*
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spliced messenger RNA

>Ggra9147.t1 ID=Ggra9147.t1|Name=Ggra9147.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1377bp|location=Sequence derived from alignment at tig00000075_pilon:93830..95855- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCCCATTGCAGCTGTCTGGGCAGTGCGCAACACCCCATCACGCG
TACTCCCAAGTCGCATGTGACCCGCAACCATAACTTTCATCGCGTGTCGT
CGCGGCGTCGTGCCGCGGCTAGCGCGCCTGTTGCAAACGCGGCTGAAGAC
GCTGCCGCCGCTTCTGCCGCCGCGCAGAGTGCGGCCGATCATGTGGCCGC
CTCTTCGCTGATTGCTGCGGCTGATGCCCCACCTGTGGCTGGCTACGCAG
GCGTCGCCTTGGACGCTCTGGTTGCTGTTTCAGAGCCTATTGCGCCCTCA
GATTTGGTCGTGGATGCCTCTGAACCCGTTGCAGCCTCACAACCGCTGGG
TGCCGCACAAAGCACCGAGCTGTATGAGCGCATAGTCTCGGCTGACATAC
CGCCCCTGCCACACGCGGCGGTGTCGCGGCCGCCGCCTGCCACGCCCGCG
CCGTCCGCCAACAGCGACGAGCAACAGGCAATGGCAGCCCCGCAGCGCGG
TCACTCCTCCGTCGCGCCGCCAGAAGTGTCGTCGGCCGTCGTTCGCACAG
TGTCTTCGTCAGCGCGCTCGCAGCTGGTGGTTGAGGGGGACGATAAGCTG
CAGCAGCAGAGCCCGACGACATTGCAAGAGGCGGTGCAGGTTATTGGAAG
CGCAACGTTGGAGGCGGACGACGACGCGGAGCGCGGATGGGTGGATGCCA
CGGCCCCGGCGTCGGTGATGATGCAGATCCGACATTATGAGAGCCTGGAA
CGTGAGGCGCATGTCGATGTGACCGAATTCATTCGTTCGCCTTGTGGCTT
CTTCGTCGCGACGTGGGTGTCGTTCTCCTCCTCGTTCGCAATGAAGCCCG
ATGACAAACCGGACTTTTCCACGCTCAATGTGGGCGTATTGGAGTTACAG
GGCGACTTTGCAGAGCACACCGCCATGCTGCATGCGTGCGGCGTGCGCTC
GGTGAGCGCGGTCAAACAAGTCAACGACCTGAAGCACATAGACGCTTTAA
TCATTCCCGGTGGAGAAAGTACCGTTATAAGTAAACTACTAATCGATTTC
AAACTGATGCAACCCATTCGCAAACTGGTACAAGACGGACTTCCCATCTT
CGGCACATGTGCCGGTCTCATCTTGTTGGCCAGGCAGATTCGACAGTTTG
ACGAGCAGCAACGAATTGGTGTGTTGGACGTGGTGGTTGATCGAAATGCC
TATGGCTCCCAGATTGATTCGTTTGAGAGTTTTGTCAGCGCCGATGTGTA
CCCGTTCCAGGGAGGTGCCGCGTTGAGAGCGGTGCATATTCGCGCACCGG
CCGTCGTGCAGATGGGCGACGGTGTACAGGCTCTGGCTGCGTTTAGGGAG
CGAGCTGTGTTGGTGCGACAGGCGTAA
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protein sequence of Ggra9147.t1

>Ggra9147.t1 ID=Ggra9147.t1|Name=Ggra9147.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=459bp
MGAHCSCLGSAQHPITRTPKSHVTRNHNFHRVSSRRRAAASAPVANAAED
AAAASAAAQSAADHVAASSLIAAADAPPVAGYAGVALDALVAVSEPIAPS
DLVVDASEPVAASQPLGAAQSTELYERIVSADIPPLPHAAVSRPPPATPA
PSANSDEQQAMAAPQRGHSSVAPPEVSSAVVRTVSSSARSQLVVEGDDKL
QQQSPTTLQEAVQVIGSATLEADDDAERGWVDATAPASVMMQIRHYESLE
REAHVDVTEFIRSPCGFFVATWVSFSSSFAMKPDDKPDFSTLNVGVLELQ
GDFAEHTAMLHACGVRSVSAVKQVNDLKHIDALIIPGGESTVISKLLIDF
KLMQPIRKLVQDGLPIFGTCAGLILLARQIRQFDEQQRIGVLDVVVDRNA
YGSQIDSFESFVSADVYPFQGGAALRAVHIRAPAVVQMGDGVQALAAFRE
RAVLVRQA*
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mRNA from alignment at tig00000075_pilon:93830..95855-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9147.t1 ID=Ggra9147.t1|Name=Ggra9147.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2026bp|location=Sequence derived from alignment at tig00000075_pilon:93830..95855- (Gracilaria gracilis GNS1m male)
ATGGGCGCCCATTGCAGCTGTCTGGGCAGTGCGCAACACCCCATCACGCG
TACTCCCAAGTCGCATGTGACCCGCAACCATAACTTTCATCGCGTGTCGT
CGCGGCGTCGTGCCGCGGCTAGCGCGCCTGTTGCAAACGCGGCTGAAGAC
GCTGCCGCCGCTTCTGCCGCCGCGCAGAGTGCGGCCGATCATGTGGCCGC
CTCTTCGCTGATTGCTGGTAGCTTTGAAATGCTTTCTGTTCCCACGCGCA
GAACAAAGCAGATCACTGCGCAGATGGCGCAAAGGACTTCGGACGGCACG
CGCGGCTCTGCGCCCGCCGCTGGTGCTGGTGCTGGTGCTGAGGCTGGCAC
CGTCGACGGTACTGGCGCTGCCGATGAAGCTGGCGCTGCCGATGGTGCTG
GTGCCGCCGGTGAGGCTGGCGCTGCCCATAGTAATGGTGCTGCTGATGAG
ACTGGCGCTGCCAATGGTACTAGCGCCGCCAATGGTACAGGCACTGTCGA
TGGTACTGGCGCCGCCGGTAAGGCTGGCGCTACTGCTGGTGCTGGTGCTA
CTGTTGATGCTGGTGCTACTATTGATGTTGGTGCTACTGTTGATGGTGGT
GCTACCGGTGATGCTGGTGCTACTGTTGATGGTGGTGCTACCAGTGATGC
TAACGTCGCCACTGATTTTGGCGCTGCGGCTCATGCCGTCGCTCCGGTTG
ATGCTCTACCAGCGGCTGATGCCCCACCTGTGGCTGGCTACGCAGGCGTC
GCCTTGGACGCTCTGGTTGCTGTTTCAGAGCCTATTGCGCCCTCAGATTT
GGTCGTGGATGCCTCTGAACCCGTTGCAGCCTCACAACCGCTGGGTGCCG
CACAAAGCACCGAGCTGTATGAGCGCATAGTCTCGGCTGACATACCGCCC
CTGCCACACGCGGCGGTGTCGCGGCCGCCGCCTGCCACGCCCGCGCCGTC
CGCCAACAGCGACGAGCAACAGGCAATGGCAGCCCCGCAGCGCGGTCACT
CCTCCGTCGCGCCGCCAGAAGTGTCGTCGGCCGTCGTTCGCACAGTGTCT
TCGTCAGCGCGCTCGCAGCTGGTGGTTGAGGGGGACGATAAGCTGCAGCA
GCAGAGCCCGACGACATTGCAAGAGGCGGTGCAGGTTATTGGAAGCGCAA
CGTTGGAGGCGGACGACGACGCGGAGCGCGGATGGGTGGATGCCACGGCC
CCGGCGTCGGTGATGATGCAGATCCGACATTATGAGAGCCTGGAACGTGA
GGCGCATGTCGATGTGACCGAATTCATTCGTTCGCGTTCGTCCGCGTCGT
GATTTATGGTCCATTCAATTTTTTTTATATACATACGCACATATAACTTC
GCTGAGCTTGTGGCTTCTTCGTCGCGACGTGGGTGTCGTTCTCCTCCTCG
TTCGCAATGAAGCCCGATGACAAACCGGACTTTTCCACGCTCAATGTGGG
CGTATTGGAGTTACAGGGCGACTTTGCAGAGCACACCGCCATGCTGCATG
CGTGCGGCGTGCGCTCGGTGAGCGCGGTCAAACAAGTCAACGACCTGAAG
CACATAGACGCTTTAATCATTCCCGGTGGAGAAAGTACCGTTATAAGTAA
ACTACTAATCGATTTCAAACTGATGCAACCCATTCGCAAACTGGTACAAG
ACGGACTTCCCATCTTCGGCACATGTGCCGGTCTCATCTTGTTGGCCAGG
CAGATTCGACAGTTTGACGAGCAGCAACGAATTGGTGTGTTGGACGTGGT
GGTTGATCGAAATGCCTATGGCTCCCAGATTGATTCGTTTGAGAGTTTTG
TCAGCGCCGATGTGTACCCGTTCCAGGGAGGTGCCGCGTTGAGAGCGGTG
CATATTCGCGCACCGGCCGTCGTGCAGATGGGCGACGGTGTACAGGCTCT
GGCTGCGTTTAGGGAGCGAGCTGTGTTGGTGCGACAGGGTAACGTGCTTG
GCTGTACTTTTCACCCCGAACTTACGGACGACACTCGCGTGCATGAGTTG
TTCTTGCACATGGTTCTAAAGCGTAA
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Coding sequence (CDS) from alignment at tig00000075_pilon:93830..95855-

>Ggra9147.t1 ID=Ggra9147.t1|Name=Ggra9147.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1377bp|location=Sequence derived from alignment at tig00000075_pilon:93830..95855- (Gracilaria gracilis GNS1m male)
ATGGGCGCCCATTGCAGCTGTCTGGGCAGTGCGCAACACCCCATCACGCG
TACTCCCAAGTCGCATGTGACCCGCAACCATAACTTTCATCGCGTGTCGT
CGCGGCGTCGTGCCGCGGCTAGCGCGCCTGTTGCAAACGCGGCTGAAGAC
GCTGCCGCCGCTTCTGCCGCCGCGCAGAGTGCGGCCGATCATGTGGCCGC
CTCTTCGCTGATTGCTGCGGCTGATGCCCCACCTGTGGCTGGCTACGCAG
GCGTCGCCTTGGACGCTCTGGTTGCTGTTTCAGAGCCTATTGCGCCCTCA
GATTTGGTCGTGGATGCCTCTGAACCCGTTGCAGCCTCACAACCGCTGGG
TGCCGCACAAAGCACCGAGCTGTATGAGCGCATAGTCTCGGCTGACATAC
CGCCCCTGCCACACGCGGCGGTGTCGCGGCCGCCGCCTGCCACGCCCGCG
CCGTCCGCCAACAGCGACGAGCAACAGGCAATGGCAGCCCCGCAGCGCGG
TCACTCCTCCGTCGCGCCGCCAGAAGTGTCGTCGGCCGTCGTTCGCACAG
TGTCTTCGTCAGCGCGCTCGCAGCTGGTGGTTGAGGGGGACGATAAGCTG
CAGCAGCAGAGCCCGACGACATTGCAAGAGGCGGTGCAGGTTATTGGAAG
CGCAACGTTGGAGGCGGACGACGACGCGGAGCGCGGATGGGTGGATGCCA
CGGCCCCGGCGTCGGTGATGATGCAGATCCGACATTATGAGAGCCTGGAA
CGTGAGGCGCATGTCGATGTGACCGAATTCATTCGTTCGCCTTGTGGCTT
CTTCGTCGCGACGTGGGTGTCGTTCTCCTCCTCGTTCGCAATGAAGCCCG
ATGACAAACCGGACTTTTCCACGCTCAATGTGGGCGTATTGGAGTTACAG
GGCGACTTTGCAGAGCACACCGCCATGCTGCATGCGTGCGGCGTGCGCTC
GGTGAGCGCGGTCAAACAAGTCAACGACCTGAAGCACATAGACGCTTTAA
TCATTCCCGGTGGAGAAAGTACCGTTATAAGTAAACTACTAATCGATTTC
AAACTGATGCAACCCATTCGCAAACTGGTACAAGACGGACTTCCCATCTT
CGGCACATGTGCCGGTCTCATCTTGTTGGCCAGGCAGATTCGACAGTTTG
ACGAGCAGCAACGAATTGGTGTGTTGGACGTGGTGGTTGATCGAAATGCC
TATGGCTCCCAGATTGATTCGTTTGAGAGTTTTGTCAGCGCCGATGTGTA
CCCGTTCCAGGGAGGTGCCGCGTTGAGAGCGGTGCATATTCGCGCACCGG
CCGTCGTGCAGATGGGCGACGGTGTACAGGCTCTGGCTGCGTTTAGGGAG
CGAGCTGTGTTGGTGCGACAGGCGTAA
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